Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012140

Physical Location & Seq

Genomic Coordinates Reverse (-)

29097723 .. 29100166

Gene Structure 2444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGTCGTCGTCGTCGTCGTCAGACGAAGAGCGGCGGTGGGTCCCACTAAGGAGTAGACCGGAGTTTTCGGACGTGATCCCGGTGGAGCAAGACGACGGGCCGAATCCGGTGGTTCCGATAACCTACAAGGAAGAGTTCCGAGAGACCATGGACTACTTCCGAGCCCTGTACAAAGCCGATGAGCGATCCCTTCGCGCCCTTCACCTCACTTCCGAAGCCATCCAATTCAACCCTGGAAACTACACTGTATGGCACTTTAGGCGTTTAGTACTTGAGGCACTCAATCATGATTTGCACGATGAACTTGCTCTGACTGAACACATTGCTCGAGGAAACTCCAAAAACTATCAGTTATGGCATCATAGGCGGTGGGTAGCTGAGAAATTGGGAACTAGTGCTACAACCGAGGAACTTAGGTTCACCAAGAACATACTCTCCATTGATGCTAAACATTACCATGCTTGGTCTCATAGGCAGTGGGTTCTTCAGGCACTTGGAGGGTGGGAAGACGAACTTGACTATTGTCAGCAGCTCCTTGAAGAAGACATTTTTAACAATTCTGCTTGGAATCAGAGATATTTTGTCATTACAAGATCACCATTCCTGGGAGGCCTGAAAGCTATGAGAGAGTCTGAAGTGTGTTATACTCTTAATGGTATTGTTGCCCGCCCAGAGAATGAAAGCTCATGGAGGTACCTTCGAGGGCTTTACAAAGATGACAATTCATCTTGGGTAAACAATCCTCAAATTTCTTCAGTATGCTTGGAGATTTTAAATGCCAAAACCAACTGTGTCTTTGCTTTGAGCACACTTTTGGATCTTATCTCCCATGGTTTCCAACCAAGCCAAGAGTTCACAGATGCTGTGGATGCTCTACGAATTTCAGACTCCGAACAAAGAGATTCTGATGTGGCAAAAGCTGCTTGTTTTGTCTTGGAATCTGTCGATCCATTTAGAGCTAACTATTGGCAGTGGTACAAGAACAAGCATTTCCAAAATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0004661 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005953 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008318 GO:0008360 GO:0009414 GO:0009415 GO:0009628 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0018344 GO:0019538 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0032991 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0065007 GO:0065008 GO:0071704 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

PPTA

Protein Analysis

334

Amino Acids

39.02

Weight (kDa)

5.49

Isoelectric Point (pI)

59.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPTA	PF01239	65 - 93	3.2e-07	Protein prenyltransferase alpha subunit repeat
PPTA	PF01239	98 - 128	8e-09	Protein prenyltransferase alpha subunit repeat
PPTA	PF01239	136 - 165	2.2e-10	Protein prenyltransferase alpha subunit repeat
PPTA	PF01239	168 - 198	1.3e-07	Protein prenyltransferase alpha subunit repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59380
fragaria_vesca	FvH4_4g10680 FvH4_4g10680 FvH4_4g10680 FvH4_4g10680 FvH4_4g10680
malus_domestica	MD04G1007300.v1.1
prunus_persica	Prupe.1G191500_v2.0.a1
pyrus_communis	pycom04g03430
rosa_chinensis	RchiOBHm_Chr4g0407031
rosa_laevigata	RLG00000008742
rosa_multiflora	Rmu_sc0000600.1_g000009
rosa_roxburghii	Rroxscaffold_5G00351730
rosa_rugosa	Rorug04G0077000
rosa_samantha	Rh4AG142200 Rh4BG139400 Rh4CG148800 Rh4DG136400
rosa_wichuraiana	Rw4G011590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	693
AccB1I	GGYRCC	1 cut(s)	693
AccBSI	CCGCTC	1 cut(s)	31
AccI	GTMKAC	1 cut(s)	55
AccII	CGCG	1 cut(s)	195
AciI	CCGC	4 cut(s)	31, 34, 367, 667
AclWI	GGATC	4 cut(s)	70, 180, 825, 941
AcsI	RAATTY	2 cut(s)	747, 879
AcuI	CTGAAG	3 cut(s)	470, 654, 738
AfaI	GTAC	4 cut(s)	170, 270, 695, 977
AfiI	CCNNNNNNNGG	1 cut(s)	605
AgsI	TTSAA	2 cut(s)	229, 539
AhlI	ACTAGT	1 cut(s)	392
AjiI	CACGTC	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	232, 603
AloI	GAACNNNNNNTCC	4 cut(s)	401, 419, 433, 451
AluBI	AGCT	6 cut(s)	377, 532, 620, 684, 920, 959
AluI	AGCT	6 cut(s)	377, 532, 620, 684, 920, 959
Alw21I	GWGCWC	1 cut(s)	809
Alw26I	GTCTC	2 cut(s)	137, 471
AlwI	GGATC	4 cut(s)	70, 180, 825, 941
AlwNI	CAGNNNCTG	1 cut(s)	863
Ama87I	CYCGRG	1 cut(s)	327
AoxI	GGCC	2 cut(s)	98, 610
ApeKI	GCWGC	2 cut(s)	529, 920
ApoI	RAATTY	2 cut(s)	747, 879
Asp718I	GGTACC	1 cut(s)	693
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	2 cut(s)	40, 98
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	3 cut(s)	194, 412, 588
AvaI	CYCGRG	1 cut(s)	327
AvaII	GGWCC	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	693
BanII	GRGCYC	1 cut(s)	166
BbsI	GAAGAC	2 cut(s)	513, 549
Bbv12I	GWGCWC	1 cut(s)	809
BbvI	GCAGC	2 cut(s)	541, 907
BccI	CCATC	1 cut(s)	227
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BciT130I	CCWGG	2 cut(s)	234, 605
BcnI	CCSGG	1 cut(s)	80
BcoDI	GTCTC	2 cut(s)	137, 471
BcuI	ACTAGT	1 cut(s)	392
BfaI	CTAG	1 cut(s)	393
BisI	GCNGC	3 cut(s)	32, 530, 921
BlsI	GCNGC	3 cut(s)	33, 531, 922
BmcAI	AGTACT	1 cut(s)	270
Bme1390I	CCNGG	3 cut(s)	80, 234, 605
Bme18I	GGWCC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	327
BmgBI	CACGTC	1 cut(s)	73
BmgT120I	GGNCC	2 cut(s)	40, 98
BmiI	GGNNCC	4 cut(s)	41, 42, 114, 695
BmrFI	CCNGG	3 cut(s)	80, 234, 605
BmsI	GCATC	4 cut(s)	367, 433, 850, 859
BoxI	GACNNNNGTC	1 cut(s)	522
BpiI	GAAGAC	2 cut(s)	513, 549
BpuEI	CTTGAG	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	80
BsaI	GGTCTC	2 cut(s)	137, 471
BsaJI	CCNNGG	5 cut(s)	147, 232, 405, 604, 829
BsaWI	WCCGGW	2 cut(s)	58, 106
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bsc4I	CCNNNNNNNGG	1 cut(s)	605
Bse3DI	GCAATG	1 cut(s)	321
BseBI	CCWGG	2 cut(s)	234, 605
BseDI	CCNNGG	5 cut(s)	147, 232, 405, 604, 829
BseGI	GGATG	2 cut(s)	219, 874
BseLI	CCNNNNNNNGG	1 cut(s)	605
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	369
BseXI	GCAGC	2 cut(s)	541, 907
Bsh1236I	CGCG	1 cut(s)	195
BshFI	GGCC	2 cut(s)	100, 612
BshNI	GGYRCC	1 cut(s)	693
BsiHKAI	GWGCWC	1 cut(s)	809
BsiHKCI	CYCGRG	1 cut(s)	327
BsiSI	CCGG	3 cut(s)	59, 80, 107
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	605
BsmAI	GTCTC	2 cut(s)	137, 471
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	100, 612
Bso31I	GGTCTC	2 cut(s)	137, 471
BsoBI	CYCGRG	1 cut(s)	327
Bsp1286I	GDGCHC	2 cut(s)	166, 809
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	5 cut(s)	75, 185, 593, 817, 946
Bsp19I	CCATGG	2 cut(s)	147, 829
BspACI	CCGC	4 cut(s)	31, 34, 367, 667
BspANI	GGCC	2 cut(s)	100, 612
BspCNI	CTCAG	1 cut(s)	370
BspFNI	CGCG	1 cut(s)	195
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	4 cut(s)	41, 42, 114, 695
BspPI	GGATC	4 cut(s)	70, 180, 825, 941
BspQI	GCTCTTC	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	693
BspTNI	GGTCTC	2 cut(s)	137, 471
BsrBI	CCGCTC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	321
BsrGI	TGTACA	1 cut(s)	168
BssECI	CCNNGG	5 cut(s)	147, 232, 405, 604, 829
BssMI	GATC	5 cut(s)	75, 185, 593, 817, 946
BssT1I	CCWWGG	2 cut(s)	147, 829
Bst2UI	CCWGG	2 cut(s)	234, 605
Bst4CI	ACNGT	2 cut(s)	247, 791
Bst6I	CTCTTC	2 cut(s)	21, 126
BstAPI	GCANNNNNTGC	1 cut(s)	920
BstAUI	TGTACA	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	667
BstDEI	CTNAG	3 cut(s)	47, 378, 413
BstDSI	CCRYGG	2 cut(s)	147, 829
BstF5I	GGATG	2 cut(s)	219, 874
BstFNI	CGCG	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	5 cut(s)	78, 188, 596, 820, 949
BstMAI	GTCTC	2 cut(s)	137, 471
BstMBI	GATC	5 cut(s)	75, 185, 593, 817, 946
BstMWI	GCNNNNNNNGC	4 cut(s)	259, 364, 869, 920
BstNI	CCWGG	2 cut(s)	234, 605
BstPAI	GACNNNNGTC	1 cut(s)	522
BstSCI	CCNGG	3 cut(s)	78, 232, 603
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	541, 907
BstV2I	GAAGAC	2 cut(s)	513, 549
BstX2I	RGATCY	1 cut(s)	817
BstYI	RGATCY	1 cut(s)	817
BsuRI	GGCC	2 cut(s)	100, 612
BtgI	CCRYGG	2 cut(s)	147, 829
BtrI	CACGTC	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	219, 874
BtsI	GCAGTG	2 cut(s)	482, 977
BtsIMutI	CAGTG	3 cut(s)	243, 482, 977
Cac8I	GCNNGC	1 cut(s)	667
CaiI	CAGNNNCTG	1 cut(s)	863
CciI	TCATGA	1 cut(s)	286
CfoI	GCGC	1 cut(s)	197
Cfr13I	GGNCC	2 cut(s)	40, 98
Csp6I	GTAC	4 cut(s)	169, 269, 694, 976
CviAII	CATG	5 cut(s)	148, 287, 458, 687, 830
CviQI	GTAC	4 cut(s)	169, 269, 694, 976
DdeI	CTNAG	3 cut(s)	47, 378, 413
DpnI	GATC	5 cut(s)	77, 187, 595, 819, 948
DpnII	GATC	5 cut(s)	75, 185, 593, 817, 946
DraI	TTTAAA	1 cut(s)	774
Eam1104I	CTCTTC	2 cut(s)	21, 126
EarI	CTCTTC	2 cut(s)	21, 126
Eco130I	CCWWGG	2 cut(s)	147, 829
Eco147I	AGGCCT	1 cut(s)	612
Eco24I	GRGCYC	1 cut(s)	166
Eco31I	GGTCTC	2 cut(s)	137, 471
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	3 cut(s)	470, 654, 738
Eco88I	CYCGRG	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRII	CCWGG	2 cut(s)	232, 603
EcoT14I	CCWWGG	2 cut(s)	147, 829
EcoT38I	GRGCYC	1 cut(s)	166
ErhI	CCWWGG	2 cut(s)	147, 829
FaeI	CATG	5 cut(s)	151, 290, 461, 690, 833
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	5 cut(s)	147, 286, 457, 686, 829
FauI	CCCGC	1 cut(s)	674
FblI	GTMKAC	1 cut(s)	55
Fnu4HI	GCNGC	3 cut(s)	32, 530, 921
FokI	GGATG	2 cut(s)	206, 881
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	3 cut(s)	32, 530, 921
FspBI	CTAG	1 cut(s)	393
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	3 cut(s)	32, 530, 921
HaeIII	GGCC	2 cut(s)	100, 612
HapII	CCGG	3 cut(s)	59, 80, 107
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	5 cut(s)	151, 290, 461, 690, 833
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HinfI	GANTC	6 cut(s)	103, 568, 629, 887, 902, 938
HpaII	CCGG	3 cut(s)	59, 80, 107
HphI	GGTGA	3 cut(s)	194, 412, 588
Hpy166II	GTNNAC	4 cut(s)	56, 420, 736, 855
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	4 cut(s)	56, 420, 736, 855
Hpy99I	CGWCG	5 cut(s)	10, 13, 16, 19, 98
HpyAV	CCTTC	3 cut(s)	200, 209, 707
HpyCH4III	ACNGT	2 cut(s)	247, 791
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	4 cut(s)	259, 364, 869, 920
HpyF3I	CTNAG	3 cut(s)	47, 378, 413
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	5 cut(s)	151, 290, 461, 690, 833
HspAI	GCGC	1 cut(s)	195
KflI	GGGWCCC	1 cut(s)	40
KpnI	GGTACC	1 cut(s)	697
Kzo9I	GATC	5 cut(s)	75, 185, 593, 817, 946
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	2 cut(s)	85, 537
Lsp1109I	GCAGC	2 cut(s)	541, 907
LweI	GCATC	4 cut(s)	367, 433, 850, 859
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	1 cut(s)	72
MalI	GATC	5 cut(s)	77, 187, 595, 819, 948
MbiI	CCGCTC	1 cut(s)	31
MboI	GATC	5 cut(s)	75, 185, 593, 817, 946
MboII	GAAGA	7 cut(s)	38, 143, 476, 518, 551, 554, 744
MflI	RGATCY	1 cut(s)	817
MhlI	GDGCHC	2 cut(s)	166, 809
MluCI	AATT	6 cut(s)	224, 383, 556, 721, 747, 879
MlyI	GAGTC	2 cut(s)	638, 881
MmeI	TCCRAC	1 cut(s)	862
MnlI	CCTC	9 cut(s)	215, 268, 323, 400, 491, 602, 684, 695, 753
MseI	TTAA	4 cut(s)	552, 651, 773, 1003
MslI	CAYNNNNRTG	1 cut(s)	456
MspI	CCGG	3 cut(s)	59, 80, 107
MspR9I	CCNGG	3 cut(s)	80, 234, 605
MvaI	CCWGG	2 cut(s)	234, 605
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	4 cut(s)	259, 364, 869, 920
NciI	CCSGG	1 cut(s)	80
NcoI	CCATGG	2 cut(s)	147, 829
NdeII	GATC	5 cut(s)	75, 185, 593, 817, 946
NlaIII	CATG	5 cut(s)	151, 290, 461, 690, 833
NlaIV	GGNNCC	4 cut(s)	41, 42, 114, 695
PaeR7I	CTCGAG	1 cut(s)	327
PagI	TCATGA	1 cut(s)	286
PceI	AGGCCT	1 cut(s)	612
PciSI	GCTCTTC	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 14
PfeI	GAWTC	4 cut(s)	103, 568, 902, 938
PkrI	GCNGC	3 cut(s)	33, 531, 922
PleI	GAGTC	2 cut(s)	637, 881
PpsI	GAGTC	2 cut(s)	637, 881
PpuMI	RGGWCCY	1 cut(s)	40
PshAI	GACNNNNGTC	1 cut(s)	522
Psp5II	RGGWCCY	1 cut(s)	40
Psp6I	CCWGG	2 cut(s)	232, 603
PspGI	CCWGG	2 cut(s)	232, 603
PspN4I	GGNNCC	4 cut(s)	41, 42, 114, 695
PspPI	GGNCC	2 cut(s)	40, 98
PspPPI	RGGWCCY	1 cut(s)	40
PspXI	VCTCGAGB	1 cut(s)	327
PsrI	GAACNNNNNNTAC	2 cut(s)	382, 414
PstNI	CAGNNNCTG	1 cut(s)	863
PsuI	RGATCY	1 cut(s)	817
RsaI	GTAC	4 cut(s)	170, 270, 695, 977
RsaNI	GTAC	4 cut(s)	169, 269, 694, 976
RseI	CAYNNNNRTG	1 cut(s)	456
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	4 cut(s)	552, 651, 773, 1003
SatI	GCNGC	3 cut(s)	32, 530, 921
Sau3AI	GATC	5 cut(s)	75, 185, 593, 817, 946
Sau96I	GGNCC	2 cut(s)	40, 98
ScaI	AGTACT	1 cut(s)	270
SchI	GAGTC	2 cut(s)	638, 881
ScrFI	CCNGG	3 cut(s)	80, 234, 605
SduI	GDGCHC	2 cut(s)	166, 809
SfaNI	GCATC	4 cut(s)	367, 433, 850, 859
Sfr274I	CTCGAG	1 cut(s)	327
SinI	GGWCC	1 cut(s)	40
SlaI	CTCGAG	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	456
SmlI	CTYRAG	2 cut(s)	272, 327
SmoI	CTYRAG	2 cut(s)	272, 327
SpeI	ACTAGT	1 cut(s)	392
Sse9I	AATT	6 cut(s)	224, 383, 556, 721, 747, 879
SseBI	AGGCCT	1 cut(s)	612
SsiI	CCGC	4 cut(s)	31, 34, 367, 667
SspMI	CTAG	1 cut(s)	393
StuI	AGGCCT	1 cut(s)	612
StyD4I	CCNGG	3 cut(s)	78, 232, 603
StyI	CCWWGG	2 cut(s)	147, 829
TaaI	ACNGT	2 cut(s)	247, 791
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	3 cut(s)	328, 700, 945
TasI	AATT	6 cut(s)	224, 383, 556, 721, 747, 879
TatI	WGTACW	2 cut(s)	168, 268
TauI	GCSGC	1 cut(s)	34
TfiI	GAWTC	4 cut(s)	103, 568, 902, 938
Tru1I	TTAA	4 cut(s)	552, 651, 773, 1003
Tru9I	TTAA	4 cut(s)	552, 651, 773, 1003
TscAI	CASTG	3 cut(s)	250, 482, 977
TseI	GCWGC	2 cut(s)	529, 920
TspDTI	ATGAA	3 cut(s)	315, 693, 714
TspRI	CASTG	3 cut(s)	250, 482, 977
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	2 cut(s)	747, 879
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230
XhoI	CTCGAG	1 cut(s)	327
XmiI	GTMKAC	1 cut(s)	55
XspI	CTAG	1 cut(s)	393
ZrmI	AGTACT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.