RchiOBHm_Chr4g0410651

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0014357
Physical Location & Seq
Reverse (-)
34427085 .. 34429751
2667 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1449 bp
ATGGGGGCGTTGTCCTTGCCTTTCTCATCGCAAAACTTTTTACCCATTACTTCTGTCAGTTCTGACTTCTTTCCTTGGAATCCTCGCTTATTTGAAGTCAGCAGAAATCATAAGAACAACAGTAAAACCAGAAATATCTCTTTTCCTGTTTCTTGCTCATCTGTCAAAACCGTGCGTAGTCCTTCACTAGACAGGCATGTTGTGAAACAGAACAAGATACGGTTTGTCCTGAAGTTACAAACACTGCTCCTTTCCAAACCAAGATGCTATATTCCACTTCAGATTCTTAATAAATGTCGATCCTACCTTTCCTTGTCAAAGCCCCGGTCCATCCTTTCAATGATCCATCGTTACCCTACCATTTTTGAAGTCTTCTCAATTCCAACAGCACCCATGCCATTCAATGCATCCAAGTCATTATCACAACCCTGTGTCCGTCTAACCCCAGCTGCAGCAGCGCTTGCTGCTCAGGAATCAACTCTAAAATCAGCCAACTCTGACTCCTTGGCTACCAAACTCCAGAAACTTCTTATGCTTTCTTCTCATCACCGGCTAGTTCTGTCAAAGTTGGTTCACCTTGGTCCAGATCTTGGTCTTCACCCTAATTTTCGGTCTCGTCTCTGCAATGACCATCCAGAAAAATTCAAGACTATTGATACCTCCTACGGCCGTGCACTTGAGCTTGTATCCTGGGACCAAGACCTGGCAAAACCTTTACCGCCTCCACAAGTTCAATCGCGTGGGCTGATAGTAGACAGGCCTTTGAAGTTCAAGCATTTGAATCTTCGGAAGGGTCTGAATCTGAAGAGGAGACACCAAGAATTTTTGATGAGATTTAGAGAAATTCCAGATGTGTGCCCTTACAATACCCCTGCCTCGGAATTTCCAAAAGAGTCAATTGAGGCAGAGAAAAGAGCTTGTTTGGTGGTGAGAGAAATGCTAGGGATGATGGTTGAAAAGAGAACATTAATAGACCACTTGACACATTTTAGAAAAGAGTTTGGTCTGCCCAACAAGTTGAGAGGGATGATTGTGAGGCACCCTGAGTTATTCTATGTGAGCTTGAAAGGGCAGAGGGATTCTGTATTCCTGGTGGAGGGCTATGATGAGAATGGTTCACTTTTAGACAAGAAGAAAGAAACTTTGGTGATAAAGGAAAAGTTGATGGAGTTGGTCAGGGAAAGCAAGAGGTTGAGAAAAGAGAGGAGGAAAGCTCGCCTTAATAACACTAGGATTGATGACTGTAATGGTGATAATAGTGATGATGATGATGATGATTATTATGATGATGGCTTCCTGGATTTGTTTGAGTCTGAGGATCTGTATTTGGATGACATTGGTGATGATAAAAGTGAGACACTAAATTACAGGCAGAATGGTGAGTTTTGGACTGCAGATGCTTATTCTGATGTTGAAGGCAGAGATGGGCAACATTTGGAGCCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

482

Amino Acids

55.54

Weight (kDa)

9.17

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 58 - 396 3.6e-96 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62990
fragaria_vesca FvH4_4g12420
malus_domestica MD04G1026700.v1.1 MD04G1027400.v1.1
prunus_persica Prupe.1G176800_v2.0.a1
pyrus_communis pycom04g02270
rosa_chinensis RchiOBHm_Chr4g0410651
rosa_laevigata RLG00000008409
rosa_multiflora Rmu_co8404567.1_g000001 Rmu_sc0006144.1_g000002
rosa_roxburghii Rroxscaffold_5G00355430
rosa_rugosa Rorug04G0111800
rosa_samantha Rh4AG162100 Rh4BG161100 Rh4CG175100 Rh4DG157900
rosa_wichuraiana Rw4G013520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1038
AccB7I CCANNNNNTGG 2 cut(s) 590, 703
AccI GTMKAC 1 cut(s) 753
AccII CGCG 1 cut(s) 739
AciI CCGC 1 cut(s) 719
AclWI GGATC 3 cut(s) 294, 337, 1326
AcoI YGGCCR 1 cut(s) 667
AcsI RAATTY 4 cut(s) 641, 821, 843, 881
AcuI CTGAAG 3 cut(s) 251, 263, 824
AfeI AGCGCT 1 cut(s) 459
AfiI CCNNNNNNNGG 4 cut(s) 590, 703, 877, 1096
AjnI CCWGG 4 cut(s) 689, 702, 1089, 1296
AjuI GAANNNNNNNTTGG 2 cut(s) 1127, 1159
AluBI AGCT 5 cut(s) 449, 682, 917, 1062, 1214
AluI AGCT 5 cut(s) 449, 682, 917, 1062, 1214
Alw21I GWGCWC 1 cut(s) 676
Alw26I GTCTC 4 cut(s) 618, 623, 805, 1349
Alw44I GTGCAC 1 cut(s) 672
AlwI GGATC 3 cut(s) 294, 337, 1326
Aor51HI AGCGCT 1 cut(s) 459
AoxI GGCC 2 cut(s) 667, 758
ApaLI GTGCAC 1 cut(s) 672
ApeKI GCWGC 4 cut(s) 449, 452, 455, 464
ApoI RAATTY 4 cut(s) 641, 821, 843, 881
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AseI ATTAAT 1 cut(s) 968
AspLEI GCGC 1 cut(s) 460
AspS9I GGNCC 3 cut(s) 327, 581, 694
AsuC2I CCSGG 1 cut(s) 325
AsuHPI GGTGA 8 cut(s) 539, 566, 590, 940, 1159, 1262, 1352, 1391
AvaII GGWCC 3 cut(s) 327, 581, 694
BaeGI GKGCMC 2 cut(s) 676, 860
BanI GGYRCC 1 cut(s) 1038
BbsI GAAGAC 2 cut(s) 364, 587
Bbv12I GWGCWC 1 cut(s) 676
BbvI GCAGC 4 cut(s) 436, 451, 464, 467
BccI CCATC 7 cut(s) 338, 354, 639, 943, 1159, 1283, 1418
BceAI ACGGC 2 cut(s) 654, 682
BciT130I CCWGG 4 cut(s) 691, 704, 1091, 1298
BciVI GTATCC 1 cut(s) 697
BcnI CCSGG 1 cut(s) 325
BcoDI GTCTC 4 cut(s) 618, 623, 805, 1349
BfaI CTAG 4 cut(s) 188, 554, 941, 1230
BfmI CTRYAG 2 cut(s) 450, 1392
BfoI RGCGCY 1 cut(s) 461
BfuI GTATCC 1 cut(s) 697
BglII AGATCT 1 cut(s) 586
BisI GCNGC 4 cut(s) 450, 453, 456, 465
BlsI GCNGC 4 cut(s) 451, 454, 457, 466
Bme1390I CCNGG 5 cut(s) 325, 691, 704, 1091, 1298
Bme18I GGWCC 3 cut(s) 327, 581, 694
BmgT120I GGNCC 3 cut(s) 327, 581, 694
BmiI GGNNCC 3 cut(s) 695, 1040, 1440
BmrFI CCNGG 5 cut(s) 325, 691, 704, 1091, 1298
BmsI GCATC 3 cut(s) 254, 416, 1387
BpiI GAAGAC 2 cut(s) 364, 587
BplI GAGNNNNNCTC 2 cut(s) 1198, 1230
BpmI CTGGAG 1 cut(s) 503
Bpu10I CCTNAGC 1 cut(s) 468
BpuEI CTTGAG 1 cut(s) 698
BpuMI CCSGG 1 cut(s) 325
BsaI GGTCTC 1 cut(s) 618
BsaJI CCNNGG 7 cut(s) 74, 323, 504, 577, 690, 876, 1442
BsaXI ACNNNNNCTCC 3 cut(s) 485, 515, 1430
Bsc4I CCNNNNNNNGG 4 cut(s) 590, 703, 877, 1096
Bse118I RCCGGY 1 cut(s) 549
Bse3DI GCAATG 1 cut(s) 631
BseBI CCWGG 4 cut(s) 691, 704, 1091, 1298
BseDI CCNNGG 7 cut(s) 74, 323, 504, 577, 690, 876, 1442
BseGI GGATG 6 cut(s) 330, 407, 631, 951, 1032, 1336
BseLI CCNNNNNNNGG 4 cut(s) 590, 703, 877, 1096
BseMI GCAATG 1 cut(s) 631
BseMII CTCAG 3 cut(s) 482, 1035, 1305
BseRI GAGGAG 2 cut(s) 823, 1219
BseSI GKGCMC 2 cut(s) 676, 860
BseX3I CGGCCG 1 cut(s) 667
BseXI GCAGC 4 cut(s) 436, 451, 464, 467
BseYI CCCAGC 1 cut(s) 445
Bsh1236I CGCG 1 cut(s) 739
Bsh1285I CGRYCG 1 cut(s) 670
BshFI GGCC 2 cut(s) 669, 760
BshNI GGYRCC 1 cut(s) 1038
BsiEI CGRYCG 1 cut(s) 670
BsiHKAI GWGCWC 1 cut(s) 676
BsiSI CCGG 2 cut(s) 325, 550
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 4 cut(s) 590, 703, 877, 1096
BsmAI GTCTC 4 cut(s) 618, 623, 805, 1349
BsmBI CGTCTC 1 cut(s) 623
BsmFI GGGAC 1 cut(s) 707
BsnI GGCC 2 cut(s) 669, 760
Bso31I GGTCTC 1 cut(s) 618
Bsp1286I GDGCHC 2 cut(s) 676, 860
Bsp143I GATC 4 cut(s) 299, 342, 586, 1318
BspACI CCGC 1 cut(s) 719
BspANI GGCC 2 cut(s) 669, 760
BspCNI CTCAG 3 cut(s) 481, 1036, 1306
BspFNI CGCG 1 cut(s) 739
BspLI GGNNCC 3 cut(s) 695, 1040, 1440
BspMAI CTGCAG 2 cut(s) 454, 1396
BspPI GGATC 3 cut(s) 294, 337, 1326
BspT107I GGYRCC 1 cut(s) 1038
BspTNI GGTCTC 1 cut(s) 618
BsrDI GCAATG 1 cut(s) 631
BsrFI RCCGGY 1 cut(s) 549
BssAI RCCGGY 1 cut(s) 549
BssECI CCNNGG 7 cut(s) 74, 323, 504, 577, 690, 876, 1442
BssMI GATC 4 cut(s) 299, 342, 586, 1318
BssT1I CCWWGG 4 cut(s) 74, 504, 577, 1442
Bst2UI CCWGG 4 cut(s) 691, 704, 1091, 1298
Bst4CI ACNGT 4 cut(s) 122, 172, 222, 1244
Bst6I CTCTTC 1 cut(s) 800
BstAPI GCANNNNNTGC 1 cut(s) 461
BstC8I GCNNGC 2 cut(s) 462, 1216
BstDEI CTNAG 3 cut(s) 468, 1044, 1314
BstENI CCTNNNNNAGG 1 cut(s) 1094
BstF5I GGATG 6 cut(s) 330, 407, 631, 951, 1032, 1336
BstFNI CGCG 1 cut(s) 739
BstH2I RGCGCY 1 cut(s) 461
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 4 cut(s) 302, 345, 589, 1321
BstMAI GTCTC 4 cut(s) 618, 623, 805, 1349
BstMBI GATC 4 cut(s) 299, 342, 586, 1318
BstMCI CGRYCG 1 cut(s) 670
BstMWI GCNNNNNNNGC 3 cut(s) 455, 461, 464
BstNI CCWGG 4 cut(s) 691, 704, 1091, 1298
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 5 cut(s) 323, 689, 702, 1089, 1296
BstSFI CTRYAG 2 cut(s) 450, 1392
BstSLI GKGCMC 2 cut(s) 676, 860
BstUI CGCG 1 cut(s) 739
BstV1I GCAGC 4 cut(s) 436, 451, 464, 467
BstV2I GAAGAC 2 cut(s) 364, 587
BstX2I RGATCY 2 cut(s) 586, 1318
BstYI RGATCY 2 cut(s) 586, 1318
BstZI CGGCCG 1 cut(s) 667
BsuI GTATCC 1 cut(s) 697
BsuRI GGCC 2 cut(s) 669, 760
BtgZI GCGATG 1 cut(s) 12
BtsCI GGATG 6 cut(s) 330, 407, 631, 951, 1032, 1336
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 242
Cac8I GCNNGC 2 cut(s) 462, 1216
CfoI GCGC 1 cut(s) 460
Cfr10I RCCGGY 1 cut(s) 549
Cfr13I GGNCC 3 cut(s) 327, 581, 694
CviAII CATG 2 cut(s) 197, 394
DdeI CTNAG 3 cut(s) 468, 1044, 1314
DpnI GATC 4 cut(s) 301, 344, 588, 1320
DpnII GATC 4 cut(s) 299, 342, 586, 1318
EaeI YGGCCR 1 cut(s) 667
EagI CGGCCG 1 cut(s) 667
Eam1104I CTCTTC 1 cut(s) 800
EarI CTCTTC 1 cut(s) 800
EclXI CGGCCG 1 cut(s) 667
Eco130I CCWWGG 4 cut(s) 74, 504, 577, 1442
Eco147I AGGCCT 1 cut(s) 760
Eco31I GGTCTC 1 cut(s) 618
Eco47I GGWCC 3 cut(s) 327, 581, 694
Eco47III AGCGCT 1 cut(s) 459
Eco52I CGGCCG 1 cut(s) 667
Eco57I CTGAAG 3 cut(s) 251, 263, 824
EcoNI CCTNNNNNAGG 1 cut(s) 1094
EcoRII CCWGG 4 cut(s) 689, 702, 1089, 1296
EcoT14I CCWWGG 4 cut(s) 74, 504, 577, 1442
EcoT22I ATGCAT 1 cut(s) 409
ErhI CCWWGG 4 cut(s) 74, 504, 577, 1442
Esp3I CGTCTC 1 cut(s) 623
FaeI CATG 2 cut(s) 200, 397
FaiI YATR 8 cut(s) 111, 198, 270, 395, 533, 1056, 1104, 1284
FalI AAGNNNNNCTT 2 cut(s) 1203, 1235
FaqI GGGAC 1 cut(s) 707
FatI CATG 2 cut(s) 196, 393
FblI GTMKAC 1 cut(s) 753
Fnu4HI GCNGC 4 cut(s) 450, 453, 456, 465
FokI GGATG 6 cut(s) 317, 394, 618, 958, 1039, 1343
Fsp4HI GCNGC 4 cut(s) 450, 453, 456, 465
FspBI CTAG 4 cut(s) 188, 554, 941, 1230
GlaI GCGC 1 cut(s) 459
GluI GCNGC 4 cut(s) 450, 453, 456, 465
GsaI CCCAGC 1 cut(s) 449
GsuI CTGGAG 1 cut(s) 503
HaeII RGCGCY 1 cut(s) 461
HaeIII GGCC 2 cut(s) 669, 760
HapII CCGG 2 cut(s) 325, 550
HhaI GCGC 1 cut(s) 460
Hin1II CATG 2 cut(s) 200, 397
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HinfI GANTC 9 cut(s) 79, 283, 473, 500, 781, 799, 893, 1079, 1310
HpaII CCGG 2 cut(s) 325, 550
HphI GGTGA 8 cut(s) 539, 566, 590, 940, 1159, 1262, 1352, 1391
Hpy166II GTNNAC 4 cut(s) 574, 674, 754, 1118
Hpy188I TCNGA 9 cut(s) 64, 282, 499, 789, 798, 804, 880, 1315, 1408
Hpy188III TCNNGA 7 cut(s) 229, 470, 520, 584, 635, 646, 848
Hpy8I GTNNAC 4 cut(s) 574, 674, 754, 1118
HpyAV CCTTC 3 cut(s) 192, 784, 1409
HpyCH4III ACNGT 4 cut(s) 122, 172, 222, 1244
HpyCH4V TGCA 5 cut(s) 407, 452, 624, 674, 1394
HpyF10VI GCNNNNNNNGC 3 cut(s) 455, 461, 464
HpyF3I CTNAG 3 cut(s) 468, 1044, 1314
Hsp92II CATG 2 cut(s) 200, 397
HspAI GCGC 1 cut(s) 458
Kzo9I GATC 4 cut(s) 299, 342, 586, 1318
LmnI GCTCC 2 cut(s) 252, 1438
Lsp1109I GCAGC 4 cut(s) 436, 451, 464, 467
LweI GCATC 3 cut(s) 254, 416, 1387
MaeI CTAG 4 cut(s) 188, 554, 941, 1230
MaeIII GTNAC 2 cut(s) 234, 350
MalI GATC 4 cut(s) 301, 344, 588, 1320
MboI GATC 4 cut(s) 299, 342, 586, 1318
MboII GAAGA 6 cut(s) 364, 531, 587, 776, 817, 1144
MfeI CAATTG 1 cut(s) 897
MflI RGATCY 2 cut(s) 586, 1318
MhlI GDGCHC 2 cut(s) 676, 860
MluCI AATT 8 cut(s) 378, 604, 641, 821, 843, 881, 897, 1363
MlyI GAGTC 3 cut(s) 494, 902, 1319
MmeI TCCRAC 1 cut(s) 407
Mph1103I ATGCAT 1 cut(s) 409
MseI TTAA 3 cut(s) 288, 968, 1221
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 2 cut(s) 325, 550
MspR9I CCNGG 5 cut(s) 325, 691, 704, 1091, 1298
MunI CAATTG 1 cut(s) 897
MvaI CCWGG 4 cut(s) 691, 704, 1091, 1298
MvnI CGCG 1 cut(s) 739
MwoI GCNNNNNNNGC 3 cut(s) 455, 461, 464
NciI CCSGG 1 cut(s) 325
NdeII GATC 4 cut(s) 299, 342, 586, 1318
NlaIII CATG 2 cut(s) 200, 397
NlaIV GGNNCC 3 cut(s) 695, 1040, 1440
NsiI ATGCAT 1 cut(s) 409
NspI RCATGY 1 cut(s) 200
PceI AGGCCT 1 cut(s) 760
PfeI GAWTC 6 cut(s) 79, 283, 473, 781, 799, 1079
PflMI CCANNNNNTGG 2 cut(s) 590, 703
PfoI TCCNGGA 1 cut(s) 1296
PkrI GCNGC 4 cut(s) 451, 454, 457, 466
PleI GAGTC 3 cut(s) 494, 901, 1318
PpsI GAGTC 3 cut(s) 494, 901, 1318
PshBI ATTAAT 1 cut(s) 968
Psp6I CCWGG 4 cut(s) 689, 702, 1089, 1296
PspFI CCCAGC 1 cut(s) 445
PspGI CCWGG 4 cut(s) 689, 702, 1089, 1296
PspN4I GGNNCC 3 cut(s) 695, 1040, 1440
PspPI GGNCC 3 cut(s) 327, 581, 694
PstI CTGCAG 2 cut(s) 454, 1396
PsuI RGATCY 2 cut(s) 586, 1318
PvuII CAGCTG 1 cut(s) 449
SaqAI TTAA 3 cut(s) 288, 968, 1221
SatI GCNGC 4 cut(s) 450, 453, 456, 465
Sau3AI GATC 4 cut(s) 299, 342, 586, 1318
Sau96I GGNCC 3 cut(s) 327, 581, 694
SchI GAGTC 3 cut(s) 494, 902, 1319
ScrFI CCNGG 5 cut(s) 325, 691, 704, 1091, 1298
SduI GDGCHC 2 cut(s) 676, 860
SfaNI GCATC 3 cut(s) 254, 416, 1387
SfcI CTRYAG 2 cut(s) 450, 1392
SinI GGWCC 3 cut(s) 327, 581, 694
SmlI CTYRAG 1 cut(s) 677
SmoI CTYRAG 1 cut(s) 677
Sse9I AATT 8 cut(s) 378, 604, 641, 821, 843, 881, 897, 1363
SseBI AGGCCT 1 cut(s) 760
SsiI CCGC 1 cut(s) 719
SspMI CTAG 4 cut(s) 188, 554, 941, 1230
StuI AGGCCT 1 cut(s) 760
StyD4I CCNGG 5 cut(s) 323, 689, 702, 1089, 1296
StyI CCWWGG 4 cut(s) 74, 504, 577, 1442
TaaI ACNGT 4 cut(s) 122, 172, 222, 1244
TaqI TCGA 1 cut(s) 298
TaqII GACCGA 1 cut(s) 600
TasI AATT 8 cut(s) 378, 604, 641, 821, 843, 881, 897, 1363
TfiI GAWTC 6 cut(s) 79, 283, 473, 781, 799, 1079
Tru1I TTAA 3 cut(s) 288, 968, 1221
Tru9I TTAA 3 cut(s) 288, 968, 1221
TscAI CASTG 1 cut(s) 249
TseI GCWGC 4 cut(s) 449, 452, 455, 464
TspGWI ACGGA 1 cut(s) 425
TspRI CASTG 1 cut(s) 249
Van91I CCANNNNNTGG 2 cut(s) 590, 703
VneI GTGCAC 1 cut(s) 672
VpaK11BI GGWCC 3 cut(s) 327, 581, 694
VspI ATTAAT 1 cut(s) 968
XagI CCTNNNNNAGG 1 cut(s) 1094
XapI RAATTY 4 cut(s) 641, 821, 843, 881
XceI RCATGY 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 753
XspI CTAG 4 cut(s) 188, 554, 941, 1230
Zsp2I ATGCAT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.