RchiOBHm_Chr4g0416071

F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0010725
Physical Location & Seq
Reverse (-)
40898798 .. 40899133
336 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
ATGTCGCGTTACAAAGGACCTCGTTTCAAAAAAAATCCATCATCTGGGGGCTTTATCGGGGCGGGATTGGCAGTCGGGCTTGTTTCTATTAGACCCGGGGTTGGTCAAGGTACCGTTGTGGGACAGGCTATAGAAGGGATCGCGAGACAACCAGACTCGGAAGGAAAAATACGAGGTACTTTCTTGCTTAGTCTAGCTTTCATGGAAGCTTTAACAATTTATGGGCTCGTTGCAGCATTAGCTCTTTTATTTTTGCGAATCCTTTTTTTTAGGGTGCTGCTATTTGCACACCCATTTTTTCTATTCACACACCCTCTCTATTATCTATTACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031976 GO:0031984 GO:0032991 GO:0033177 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042623 GO:0042625 GO:0042626 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045259 GO:0045263 GO:0046034 GO:0046390 GO:0046483 GO:0046933 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0099131 GO:0099132 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 map00190 map00195 map01100
Pfam Domains
Protein Families
ATP-synt_C

Protein Analysis

111

Amino Acids

12.09

Weight (kDa)

10.43

Isoelectric Point (pI)

26.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_C PF00137 19 - 81 8.4e-18 ATP synthase subunit C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 110
AccB7I CCANNNNNTGG 1 cut(s) 44
AccII CGCG 2 cut(s) 7, 143
AciI CCGC 1 cut(s) 62
AclWI GGATC 1 cut(s) 146
AfaI GTAC 2 cut(s) 112, 178
AfiI CCNNNNNNNGG 2 cut(s) 44, 101
AgsI TTSAA 1 cut(s) 28
AluBI AGCT 3 cut(s) 197, 209, 242
AluI AGCT 3 cut(s) 197, 209, 242
Alw26I GTCTC 1 cut(s) 139
AlwI GGATC 1 cut(s) 146
Ama87I CYCGRG 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 233, 277
Asp718I GGTACC 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 17
AsuC2I CCSGG 2 cut(s) 96, 97
AvaI CYCGRG 1 cut(s) 95
AvaII GGWCC 1 cut(s) 17
BaeI ACNNNNGTAYC 2 cut(s) 102, 135
BanI GGYRCC 1 cut(s) 110
BanII GRGCYC 1 cut(s) 228
BarI GAAGNNNNNNTAC 2 cut(s) 153, 185
BbvI GCAGC 2 cut(s) 245, 264
BccI CCATC 1 cut(s) 46
BcnI CCSGG 2 cut(s) 96, 97
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 1 cut(s) 194
BfmI CTRYAG 1 cut(s) 129
BisI GCNGC 2 cut(s) 234, 278
BlsI GCNGC 2 cut(s) 235, 279
Bme1390I CCNGG 2 cut(s) 96, 97
Bme18I GGWCC 1 cut(s) 17
BmeT110I CYCGRG 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 2 cut(s) 96, 97
BpuMI CCSGG 2 cut(s) 96, 97
BsaJI CCNNGG 2 cut(s) 95, 96
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 101
BseDI CCNNGG 2 cut(s) 95, 96
BseLI CCNNNNNNNGG 2 cut(s) 44, 101
BseXI GCAGC 2 cut(s) 245, 264
Bsh1236I CGCG 2 cut(s) 7, 143
BshNI GGYRCC 1 cut(s) 110
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 135
BslI CCNNNNNNNGG 2 cut(s) 44, 101
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 135
BsoBI CYCGRG 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 1 cut(s) 138
Bsp68I TCGCGA 1 cut(s) 143
BspACI CCGC 1 cut(s) 62
BspFNI CGCG 2 cut(s) 7, 143
BspLI GGNNCC 1 cut(s) 112
BspPI GGATC 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 110
BssECI CCNNGG 2 cut(s) 95, 96
BssMI GATC 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 188
BstFNI CGCG 2 cut(s) 7, 143
BstKTI GATC 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 2 cut(s) 68, 239
BstSCI CCNGG 2 cut(s) 94, 95
BstSFI CTRYAG 1 cut(s) 129
BstUI CGCG 2 cut(s) 7, 143
BstV1I GCAGC 2 cut(s) 245, 264
BtuMI TCGCGA 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 17
Cfr9I CCCGGG 1 cut(s) 95
Csp6I GTAC 2 cut(s) 111, 177
CviAII CATG 1 cut(s) 202
CviJI RGCY 7 cut(s) 51, 79, 128, 197, 209, 226, 242
CviKI_1 RGCY 7 cut(s) 51, 79, 128, 197, 209, 226, 242
CviQI GTAC 2 cut(s) 111, 177
DdeI CTNAG 1 cut(s) 188
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 17
Eco88I CYCGRG 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 228
FaeI CATG 1 cut(s) 205
FaiI YATR 3 cut(s) 131, 203, 222
FaqI GGGAC 1 cut(s) 135
FatI CATG 1 cut(s) 201
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 234, 278
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 2 cut(s) 234, 278
FspBI CTAG 1 cut(s) 194
GluI GCNGC 2 cut(s) 234, 278
HapII CCGG 1 cut(s) 96
Hin1II CATG 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 207
HinfI GANTC 2 cut(s) 155, 258
HpaII CCGG 1 cut(s) 96
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 1 cut(s) 142
HpyAV CCTTC 2 cut(s) 128, 155
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 2 cut(s) 233, 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 239
HpyF3I CTNAG 1 cut(s) 188
Hsp92II CATG 1 cut(s) 205
KpnI GGTACC 1 cut(s) 114
Kzo9I GATC 1 cut(s) 138
LpnPI CCDG 4 cut(s) 30, 109, 110, 165
Lsp1109I GCAGC 2 cut(s) 245, 264
MaeI CTAG 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 8
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 1 cut(s) 216
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 3 cut(s) 30, 167, 324
MseI TTAA 2 cut(s) 212, 334
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 2 cut(s) 96, 97
MvnI CGCG 2 cut(s) 7, 143
MwoI GCNNNNNNNGC 2 cut(s) 68, 239
NciI CCSGG 2 cut(s) 96, 97
NdeII GATC 1 cut(s) 138
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 1 cut(s) 112
NruI TCGCGA 1 cut(s) 143
PfeI GAWTC 1 cut(s) 258
PflMI CCANNNNNTGG 1 cut(s) 44
PkrI GCNGC 2 cut(s) 235, 279
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PpuMI RGGWCCY 1 cut(s) 17
Psp5II RGGWCCY 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 17
PspPPI RGGWCCY 1 cut(s) 17
RruI TCGCGA 1 cut(s) 143
RsaI GTAC 2 cut(s) 112, 178
RsaNI GTAC 2 cut(s) 111, 177
SaqAI TTAA 2 cut(s) 212, 334
SatI GCNGC 2 cut(s) 234, 278
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 96, 97
SduI GDGCHC 1 cut(s) 228
SetI ASST 6 cut(s) 22, 112, 178, 199, 211, 244
SfcI CTRYAG 1 cut(s) 129
SinI GGWCC 1 cut(s) 17
SmaI CCCGGG 1 cut(s) 97
Sse9I AATT 1 cut(s) 216
SsiI CCGC 1 cut(s) 62
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 2 cut(s) 94, 95
TaaI ACNGT 1 cut(s) 115
TasI AATT 1 cut(s) 216
TfiI GAWTC 1 cut(s) 258
Tru1I TTAA 2 cut(s) 212, 334
Tru9I TTAA 2 cut(s) 212, 334
TseI GCWGC 2 cut(s) 233, 277
TspDTI ATGAA 1 cut(s) 190
TspMI CCCGGG 1 cut(s) 95
Van91I CCANNNNNTGG 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 17
XmaI CCCGGG 1 cut(s) 95
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.