F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Castor_Poll_mid | PF06241 | 477 - 574 | 1.2e-42 | Castor and Pollux, part of voltage-gated ion channel |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2219 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 23 |
| AccI | GTMKAC | 1 cut(s) | 1750 |
| AccII | CGCG | 3 cut(s) | 183, 280, 2457 |
| AclWI | GGATC | 2 cut(s) | 1048, 2340 |
| AcoI | YGGCCR | 2 cut(s) | 1538, 2040 |
| AcsI | RAATTY | 2 cut(s) | 2229, 2251 |
| AcuI | CTGAAG | 3 cut(s) | 666, 1281, 2187 |
| AcvI | CACGTG | 1 cut(s) | 1241 |
| AcyI | GRCGYC | 2 cut(s) | 173, 309 |
| AfaI | GTAC | 5 cut(s) | 50, 677, 1572, 1683, 2448 |
| AfeI | AGCGCT | 1 cut(s) | 552 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 161, 264, 265, 305, 589, 1219, 1869, 2466 |
| AflIII | ACRYGT | 1 cut(s) | 2146 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1122, 1154, 1485, 1517 |
| Alw21I | GWGCWC | 2 cut(s) | 492, 1869 |
| Alw26I | GTCTC | 8 cut(s) | 36, 361, 565, 619, 1107, 1234, 2135, 2536 |
| AlwI | GGATC | 2 cut(s) | 1048, 2340 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 45 |
| Ama87I | CYCGRG | 3 cut(s) | 34, 616, 1855 |
| Aor51HI | AGCGCT | 1 cut(s) | 552 |
| AoxI | GGCC | 6 cut(s) | 233, 319, 385, 1538, 1851, 2040 |
| ApeKI | GCWGC | 4 cut(s) | 77, 1468, 1721, 2194 |
| ApoI | RAATTY | 2 cut(s) | 2229, 2251 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2004, 2164 |
| AspLEI | GCGC | 4 cut(s) | 185, 553, 2457, 2459 |
| AspS9I | GGNCC | 4 cut(s) | 164, 234, 1852, 2236 |
| AsuC2I | CCSGG | 4 cut(s) | 1473, 1646, 1856, 1857 |
| AsuHPI | GGTGA | 5 cut(s) | 51, 621, 2435, 2569, 2587 |
| AsuNHI | GCTAGC | 1 cut(s) | 670 |
| AvaI | CYCGRG | 3 cut(s) | 34, 616, 1855 |
| AvaII | GGWCC | 2 cut(s) | 164, 2236 |
| BalI | TGGCCA | 1 cut(s) | 1540 |
| BanII | GRGCYC | 3 cut(s) | 492, 1196, 1869 |
| BbrPI | CACGTG | 1 cut(s) | 1241 |
| BbsI | GAAGAC | 3 cut(s) | 1269, 1997, 2064 |
| Bbv12I | GWGCWC | 2 cut(s) | 492, 1869 |
| BbvCI | CCTCAGC | 1 cut(s) | 1337 |
| BbvI | GCAGC | 4 cut(s) | 89, 1480, 1733, 2206 |
| BccI | CCATC | 4 cut(s) | 133, 1530, 1544, 1913 |
| BceAI | ACGGC | 5 cut(s) | 160, 170, 334, 338, 1974 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1694, 1728 |
| BciVI | GTATCC | 1 cut(s) | 1782 |
| BclI | TGATCA | 2 cut(s) | 1276, 1575 |
| BcnI | CCSGG | 4 cut(s) | 1473, 1646, 1856, 1857 |
| BcoDI | GTCTC | 8 cut(s) | 36, 361, 565, 619, 1107, 1234, 2135, 2536 |
| BfaI | CTAG | 2 cut(s) | 671, 1464 |
| BfmI | CTRYAG | 2 cut(s) | 1719, 1779 |
| BfoI | RGCGCY | 1 cut(s) | 554 |
| BfuI | GTATCC | 1 cut(s) | 1782 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1850 |
| BglII | AGATCT | 4 cut(s) | 1405, 1485, 2084, 2404 |
| BisI | GCNGC | 9 cut(s) | 78, 155, 275, 278, 351, 1469, 1722, 1808, 2195 |
| BlpI | GCTNAGC | 3 cut(s) | 1107, 2124, 2494 |
| BlsI | GCNGC | 9 cut(s) | 79, 156, 276, 279, 352, 1470, 1723, 1809, 2196 |
| BmcAI | AGTACT | 2 cut(s) | 1683, 2448 |
| Bme1390I | CCNGG | 4 cut(s) | 1473, 1646, 1856, 1857 |
| Bme18I | GGWCC | 2 cut(s) | 164, 2236 |
| BmeT110I | CYCGRG | 3 cut(s) | 34, 616, 1855 |
| BmgT120I | GGNCC | 4 cut(s) | 164, 234, 1852, 2236 |
| BmiI | GGNNCC | 5 cut(s) | 236, 1193, 1854, 1861, 2238 |
| BmrFI | CCNGG | 4 cut(s) | 1473, 1646, 1856, 1857 |
| BmsI | GCATC | 8 cut(s) | 897, 915, 934, 1276, 1579, 1625, 1831, 2491 |
| BmtI | GCTAGC | 1 cut(s) | 674 |
| BpiI | GAAGAC | 3 cut(s) | 1269, 1997, 2064 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 626, 658 |
| BpmI | CTGGAG | 2 cut(s) | 181, 530 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1337 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 1107, 2124, 2494 |
| BpuMI | CCSGG | 4 cut(s) | 1473, 1646, 1856, 1857 |
| BsaAI | YACGTR | 1 cut(s) | 1241 |
| BsaBI | GATNNNNATC | 2 cut(s) | 519, 2409 |
| BsaHI | GRCGYC | 2 cut(s) | 173, 309 |
| BsaI | GGTCTC | 1 cut(s) | 565 |
| BsaJI | CCNNGG | 6 cut(s) | 388, 1233, 1501, 1854, 1855, 2240 |
| BsaWI | WCCGGW | 3 cut(s) | 402, 631, 1319 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 161, 264, 265, 305, 589, 1219, 1869, 2466 |
| Bse1I | ACTGG | 3 cut(s) | 50, 726, 2319 |
| Bse3DI | GCAATG | 3 cut(s) | 927, 1724, 2096 |
| Bse8I | GATNNNNATC | 2 cut(s) | 519, 2409 |
| BseDI | CCNNGG | 6 cut(s) | 388, 1233, 1501, 1854, 1855, 2240 |
| BseJI | GATNNNNATC | 2 cut(s) | 519, 2409 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 161, 264, 265, 305, 589, 1219, 1869, 2466 |
| BseMI | GCAATG | 3 cut(s) | 927, 1724, 2096 |
| BseMII | CTCAG | 7 cut(s) | 33, 164, 1098, 1328, 1881, 2076, 2496 |
| BseNI | ACTGG | 3 cut(s) | 50, 726, 2319 |
| BsePI | GCGCGC | 1 cut(s) | 2455 |
| BseRI | GAGGAG | 2 cut(s) | 2387, 2441 |
| BseXI | GCAGC | 4 cut(s) | 89, 1480, 1733, 2206 |
| Bsh1236I | CGCG | 3 cut(s) | 183, 280, 2457 |
| Bsh1285I | CGRYCG | 1 cut(s) | 338 |
| BshFI | GGCC | 6 cut(s) | 235, 321, 387, 1540, 1853, 2042 |
| BsiEI | CGRYCG | 1 cut(s) | 338 |
| BsiHKAI | GWGCWC | 2 cut(s) | 492, 1869 |
| BsiHKCI | CYCGRG | 3 cut(s) | 34, 616, 1855 |
| BslFI | GGGAC | 3 cut(s) | 11, 296, 1356 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 161, 264, 265, 305, 589, 1219, 1869, 2466 |
| BsmAI | GTCTC | 8 cut(s) | 36, 361, 565, 619, 1107, 1234, 2135, 2536 |
| BsmBI | CGTCTC | 3 cut(s) | 361, 2135, 2536 |
| BsmFI | GGGAC | 3 cut(s) | 11, 296, 1356 |
| BsnI | GGCC | 6 cut(s) | 235, 321, 387, 1540, 1853, 2042 |
| Bso31I | GGTCTC | 1 cut(s) | 565 |
| BsoBI | CYCGRG | 3 cut(s) | 34, 616, 1855 |
| Bsp1286I | GDGCHC | 3 cut(s) | 492, 1196, 1869 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 1107, 2124, 2494 |
| BspANI | GGCC | 6 cut(s) | 235, 321, 387, 1540, 1853, 2042 |
| BspCNI | CTCAG | 7 cut(s) | 32, 163, 1099, 1329, 1882, 2075, 2497 |
| BspFNI | CGCG | 3 cut(s) | 183, 280, 2457 |
| BspHI | TCATGA | 2 cut(s) | 1429, 2478 |
| BspLI | GGNNCC | 5 cut(s) | 236, 1193, 1854, 1861, 2238 |
| BspMAI | CTGCAG | 2 cut(s) | 1723, 1783 |
| BspOI | GCTAGC | 1 cut(s) | 674 |
| BspPI | GGATC | 2 cut(s) | 1048, 2340 |
| BspQI | GCTCTTC | 1 cut(s) | 2352 |
| BspTNI | GGTCTC | 1 cut(s) | 565 |
| BsrDI | GCAATG | 3 cut(s) | 927, 1724, 2096 |
| BsrI | ACTGG | 3 cut(s) | 50, 726, 2319 |
| BssECI | CCNNGG | 6 cut(s) | 388, 1233, 1501, 1854, 1855, 2240 |
| BssHII | GCGCGC | 1 cut(s) | 2455 |
| BssNI | GRCGYC | 2 cut(s) | 173, 309 |
| BssT1I | CCWWGG | 3 cut(s) | 1233, 1501, 2240 |
| Bst4CI | ACNGT | 7 cut(s) | 627, 680, 744, 1306, 1420, 1545, 1967 |
| Bst6I | CTCTTC | 1 cut(s) | 2352 |
| BstACI | GRCGYC | 2 cut(s) | 173, 309 |
| BstBAI | YACGTR | 1 cut(s) | 1241 |
| BstC8I | GCNNGC | 4 cut(s) | 672, 1556, 2199, 2457 |
| BstEII | GGTNACC | 1 cut(s) | 627 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1217 |
| BstFNI | CGCG | 3 cut(s) | 183, 280, 2457 |
| BstH2I | RGCGCY | 1 cut(s) | 554 |
| BstHHI | GCGC | 4 cut(s) | 185, 553, 2457, 2459 |
| BstMAI | GTCTC | 8 cut(s) | 36, 361, 565, 619, 1107, 1234, 2135, 2536 |
| BstMCI | CGRYCG | 1 cut(s) | 338 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 271, 350, 384, 1721, 1850, 2072, 2324, 2395, 2510 |
| BstNSI | RCATGY | 2 cut(s) | 1558, 2150 |
| BstPI | GGTNACC | 1 cut(s) | 627 |
| BstSCI | CCNGG | 4 cut(s) | 1471, 1644, 1854, 1855 |
| BstSFI | CTRYAG | 2 cut(s) | 1719, 1779 |
| BstUI | CGCG | 3 cut(s) | 183, 280, 2457 |
| BstV1I | GCAGC | 4 cut(s) | 89, 1480, 1733, 2206 |
| BstV2I | GAAGAC | 3 cut(s) | 1269, 1997, 2064 |
| BstX2I | RGATCY | 4 cut(s) | 1405, 1485, 2084, 2404 |
| BstYI | RGATCY | 4 cut(s) | 1405, 1485, 2084, 2404 |
| BsuI | GTATCC | 1 cut(s) | 1782 |
| BsuRI | GGCC | 6 cut(s) | 235, 321, 387, 1540, 1853, 2042 |
| BtgZI | GCGATG | 2 cut(s) | 478, 1689 |
| BtsIMutI | CAGTG | 5 cut(s) | 429, 719, 740, 1914, 2312 |
| Cac8I | GCNNGC | 4 cut(s) | 672, 1556, 2199, 2457 |
| CaiI | CAGNNNCTG | 1 cut(s) | 45 |
| CciI | TCATGA | 2 cut(s) | 1429, 2478 |
| CfoI | GCGC | 4 cut(s) | 185, 553, 2457, 2459 |
| Cfr13I | GGNCC | 4 cut(s) | 164, 234, 1852, 2236 |
| Cfr9I | CCCGGG | 1 cut(s) | 1855 |
| CseI | GACGC | 3 cut(s) | 181, 298, 2117 |
| Csp6I | GTAC | 5 cut(s) | 49, 676, 1571, 1682, 2447 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 708, 743 |
| CviQI | GTAC | 5 cut(s) | 49, 676, 1571, 1682, 2447 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 23 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 23 |
| EaeI | YGGCCR | 2 cut(s) | 1538, 2040 |
| Eam1104I | CTCTTC | 1 cut(s) | 2352 |
| EarI | CTCTTC | 1 cut(s) | 2352 |
| EciI | GGCGGA | 4 cut(s) | 193, 337, 443, 815 |
| Ecl136II | GAGCTC | 2 cut(s) | 490, 1867 |
| Eco130I | CCWWGG | 3 cut(s) | 1233, 1501, 2240 |
| Eco24I | GRGCYC | 3 cut(s) | 492, 1196, 1869 |
| Eco31I | GGTCTC | 1 cut(s) | 565 |
| Eco32I | GATATC | 1 cut(s) | 1498 |
| Eco47I | GGWCC | 2 cut(s) | 164, 2236 |
| Eco47III | AGCGCT | 1 cut(s) | 552 |
| Eco53kI | GAGCTC | 2 cut(s) | 490, 1867 |
| Eco57I | CTGAAG | 3 cut(s) | 666, 1281, 2187 |
| Eco72I | CACGTG | 1 cut(s) | 1241 |
| Eco88I | CYCGRG | 3 cut(s) | 34, 616, 1855 |
| Eco91I | GGTNACC | 1 cut(s) | 627 |
| EcoICRI | GAGCTC | 2 cut(s) | 490, 1867 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1217 |
| EcoO109I | RGGNCCY | 1 cut(s) | 234 |
| EcoO65I | GGTNACC | 1 cut(s) | 627 |
| EcoRV | GATATC | 1 cut(s) | 1498 |
| EcoT14I | CCWWGG | 3 cut(s) | 1233, 1501, 2240 |
| EcoT22I | ATGCAT | 1 cut(s) | 1560 |
| EcoT38I | GRGCYC | 3 cut(s) | 492, 1196, 1869 |
| ErhI | CCWWGG | 3 cut(s) | 1233, 1501, 2240 |
| Esp3I | CGTCTC | 3 cut(s) | 361, 2135, 2536 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1485, 1517, 1993, 2025 |
| FaqI | GGGAC | 3 cut(s) | 11, 296, 1356 |
| FauI | CCCGC | 2 cut(s) | 245, 258 |
| FbaI | TGATCA | 2 cut(s) | 1276, 1575 |
| FblI | GTMKAC | 1 cut(s) | 1750 |
| Fnu4HI | GCNGC | 9 cut(s) | 78, 155, 275, 278, 351, 1469, 1722, 1808, 2195 |
| FriOI | GRGCYC | 3 cut(s) | 492, 1196, 1869 |
| Fsp4HI | GCNGC | 9 cut(s) | 78, 155, 275, 278, 351, 1469, 1722, 1808, 2195 |
| FspBI | CTAG | 2 cut(s) | 671, 1464 |
| GlaI | GCGC | 4 cut(s) | 184, 552, 2456, 2458 |
| GluI | GCNGC | 9 cut(s) | 78, 155, 275, 278, 351, 1469, 1722, 1808, 2195 |
| GsuI | CTGGAG | 2 cut(s) | 181, 530 |
| HaeII | RGCGCY | 1 cut(s) | 554 |
| HaeIII | GGCC | 6 cut(s) | 235, 321, 387, 1540, 1853, 2042 |
| HgaI | GACGC | 3 cut(s) | 181, 298, 2117 |
| HhaI | GCGC | 4 cut(s) | 185, 553, 2457, 2459 |
| Hin1I | GRCGYC | 2 cut(s) | 173, 309 |
| Hin6I | GCGC | 4 cut(s) | 183, 551, 2455, 2457 |
| HinP1I | GCGC | 4 cut(s) | 183, 551, 2455, 2457 |
| HincII | GTYRAC | 3 cut(s) | 250, 292, 1963 |
| HindII | GTYRAC | 3 cut(s) | 250, 292, 1963 |
| HindIII | AAGCTT | 5 cut(s) | 443, 535, 2161, 2199, 2434 |
| HphI | GGTGA | 5 cut(s) | 51, 621, 2435, 2569, 2587 |
| Hpy166II | GTNNAC | 6 cut(s) | 250, 292, 703, 822, 1751, 1963 |
| Hpy8I | GTNNAC | 6 cut(s) | 250, 292, 703, 822, 1751, 1963 |
| Hpy99I | CGWCG | 3 cut(s) | 175, 264, 320 |
| HpyAV | CCTTC | 6 cut(s) | 39, 76, 1664, 2414, 2554, 2581 |
| HpyCH4III | ACNGT | 7 cut(s) | 627, 680, 744, 1306, 1420, 1545, 1967 |
| HpyCH4IV | ACGT | 3 cut(s) | 824, 1240, 1884 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 271, 350, 384, 1721, 1850, 2072, 2324, 2395, 2510 |
| HpySE526I | ACGT | 3 cut(s) | 824, 1240, 1884 |
| Hsp92I | GRCGYC | 2 cut(s) | 173, 309 |
| HspAI | GCGC | 4 cut(s) | 183, 551, 2455, 2457 |
| Ksp22I | TGATCA | 2 cut(s) | 1276, 1575 |
| LguI | GCTCTTC | 1 cut(s) | 2352 |
| LmnI | GCTCC | 6 cut(s) | 206, 487, 997, 1026, 1191, 1720 |
| Lsp1109I | GCAGC | 4 cut(s) | 89, 1480, 1733, 2206 |
| LweI | GCATC | 8 cut(s) | 897, 915, 934, 1276, 1579, 1625, 1831, 2491 |
| MaeI | CTAG | 2 cut(s) | 671, 1464 |
| MaeII | ACGT | 3 cut(s) | 824, 1240, 1884 |
| MaeIII | GTNAC | 4 cut(s) | 627, 744, 2140, 2378 |
| MflI | RGATCY | 4 cut(s) | 1405, 1485, 2084, 2404 |
| MhlI | GDGCHC | 3 cut(s) | 492, 1196, 1869 |
| MlsI | TGGCCA | 1 cut(s) | 1540 |
| MluNI | TGGCCA | 1 cut(s) | 1540 |
| MlyI | GAGTC | 8 cut(s) | 5, 11, 848, 959, 1614, 1646, 2054, 2057 |
| MmeI | TCCRAC | 4 cut(s) | 39, 1004, 1527, 1818 |
| Mox20I | TGGCCA | 1 cut(s) | 1540 |
| Mph1103I | ATGCAT | 1 cut(s) | 1560 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2004, 2164 |
| MscI | TGGCCA | 1 cut(s) | 1540 |
| MseI | TTAA | 5 cut(s) | 1013, 1310, 1389, 2033, 2432 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2421 |
| Msp20I | TGGCCA | 1 cut(s) | 1540 |
| MspR9I | CCNGG | 4 cut(s) | 1473, 1646, 1856, 1857 |
| MvnI | CGCG | 3 cut(s) | 183, 280, 2457 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 271, 350, 384, 1721, 1850, 2072, 2324, 2395, 2510 |
| NciI | CCSGG | 4 cut(s) | 1473, 1646, 1856, 1857 |
| NheI | GCTAGC | 1 cut(s) | 670 |
| NlaIV | GGNNCC | 5 cut(s) | 236, 1193, 1854, 1861, 2238 |
| NmeAIII | GCCGAG | 1 cut(s) | 369 |
| NmuCI | GTSAC | 1 cut(s) | 627 |
| NsiI | ATGCAT | 1 cut(s) | 1560 |
| NspI | RCATGY | 2 cut(s) | 1558, 2150 |
| PaeI | GCATGC | 1 cut(s) | 1558 |
| PaeR7I | CTCGAG | 2 cut(s) | 34, 616 |
| PagI | TCATGA | 2 cut(s) | 1429, 2478 |
| PauI | GCGCGC | 1 cut(s) | 2455 |
| PciI | ACATGT | 1 cut(s) | 2146 |
| PciSI | GCTCTTC | 1 cut(s) | 2352 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1026 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2004, 2164 |
| PfeI | GAWTC | 9 cut(s) | 105, 146, 479, 653, 836, 1453, 2024, 2078, 2107 |
| PflFI | GACNNNGTC | 2 cut(s) | 368, 611 |
| PkrI | GCNGC | 9 cut(s) | 79, 156, 276, 279, 352, 1470, 1723, 1809, 2196 |
| Ple19I | CGATCG | 1 cut(s) | 338 |
| PleI | GAGTC | 8 cut(s) | 5, 11, 848, 959, 1613, 1646, 2054, 2056 |
| PmaCI | CACGTG | 1 cut(s) | 1241 |
| PmlI | CACGTG | 1 cut(s) | 1241 |
| PpsI | GAGTC | 8 cut(s) | 5, 11, 848, 959, 1613, 1646, 2054, 2056 |
| Ppu21I | YACGTR | 1 cut(s) | 1241 |
| PscI | ACATGT | 1 cut(s) | 2146 |
| PsiI | TTATAA | 1 cut(s) | 2219 |
| Psp124BI | GAGCTC | 2 cut(s) | 492, 1869 |
| PspCI | CACGTG | 1 cut(s) | 1241 |
| PspEI | GGTNACC | 1 cut(s) | 627 |
| PspN4I | GGNNCC | 5 cut(s) | 236, 1193, 1854, 1861, 2238 |
| PspPI | GGNCC | 4 cut(s) | 164, 234, 1852, 2236 |
| PspXI | VCTCGAGB | 1 cut(s) | 34 |
| PstI | CTGCAG | 2 cut(s) | 1723, 1783 |
| PstNI | CAGNNNCTG | 1 cut(s) | 45 |
| PsuI | RGATCY | 4 cut(s) | 1405, 1485, 2084, 2404 |
| PsyI | GACNNNGTC | 2 cut(s) | 368, 611 |
| PteI | GCGCGC | 1 cut(s) | 2455 |
| PvuI | CGATCG | 1 cut(s) | 338 |
| RsaI | GTAC | 5 cut(s) | 50, 677, 1572, 1683, 2448 |
| RsaNI | GTAC | 5 cut(s) | 49, 676, 1571, 1682, 2447 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2421 |
| SacI | GAGCTC | 2 cut(s) | 492, 1869 |
| SapI | GCTCTTC | 1 cut(s) | 2352 |
| SaqAI | TTAA | 5 cut(s) | 1013, 1310, 1389, 2033, 2432 |
| SatI | GCNGC | 9 cut(s) | 78, 155, 275, 278, 351, 1469, 1722, 1808, 2195 |
| Sau96I | GGNCC | 4 cut(s) | 164, 234, 1852, 2236 |
| ScaI | AGTACT | 2 cut(s) | 1683, 2448 |
| SchI | GAGTC | 8 cut(s) | 5, 11, 848, 959, 1614, 1646, 2054, 2057 |
| ScrFI | CCNGG | 4 cut(s) | 1473, 1646, 1856, 1857 |
| SduI | GDGCHC | 3 cut(s) | 492, 1196, 1869 |
| SfaNI | GCATC | 8 cut(s) | 897, 915, 934, 1276, 1579, 1625, 1831, 2491 |
| SfcI | CTRYAG | 2 cut(s) | 1719, 1779 |
| Sfr274I | CTCGAG | 2 cut(s) | 34, 616 |
| SinI | GGWCC | 2 cut(s) | 164, 2236 |
| SlaI | CTCGAG | 2 cut(s) | 34, 616 |
| SmaI | CCCGGG | 1 cut(s) | 1857 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2421 |
| SmlI | CTYRAG | 2 cut(s) | 34, 616 |
| SmoI | CTYRAG | 2 cut(s) | 34, 616 |
| SphI | GCATGC | 1 cut(s) | 1558 |
| SspMI | CTAG | 2 cut(s) | 671, 1464 |
| SstI | GAGCTC | 2 cut(s) | 492, 1869 |
| StyD4I | CCNGG | 4 cut(s) | 1471, 1644, 1854, 1855 |
| StyI | CCWWGG | 3 cut(s) | 1233, 1501, 2240 |
| TaaI | ACNGT | 7 cut(s) | 627, 680, 744, 1306, 1420, 1545, 1967 |
| TaiI | ACGT | 3 cut(s) | 827, 1243, 1887 |
| TaqI | TCGA | 6 cut(s) | 9, 35, 617, 684, 2027, 2291 |
| TatI | WGTACW | 3 cut(s) | 1570, 1681, 2446 |
| TauI | GCSGC | 5 cut(s) | 157, 277, 280, 353, 1810 |
| TfiI | GAWTC | 9 cut(s) | 105, 146, 479, 653, 836, 1453, 2024, 2078, 2107 |
| Tru1I | TTAA | 5 cut(s) | 1013, 1310, 1389, 2033, 2432 |
| Tru9I | TTAA | 5 cut(s) | 1013, 1310, 1389, 2033, 2432 |
| TscAI | CASTG | 5 cut(s) | 429, 726, 747, 1921, 2319 |
| TseFI | GTSAC | 1 cut(s) | 627 |
| TseI | GCWGC | 4 cut(s) | 77, 1468, 1721, 2194 |
| Tsp45I | GTSAC | 1 cut(s) | 627 |
| TspDTI | ATGAA | 5 cut(s) | 58, 1692, 2166, 2433, 2457 |
| TspGWI | ACGGA | 2 cut(s) | 1281, 2560 |
| TspMI | CCCGGG | 1 cut(s) | 1855 |
| TspRI | CASTG | 5 cut(s) | 429, 726, 747, 1921, 2319 |
| Tth111I | GACNNNGTC | 2 cut(s) | 368, 611 |
| VpaK11BI | GGWCC | 2 cut(s) | 164, 2236 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1217 |
| XapI | RAATTY | 2 cut(s) | 2229, 2251 |
| XceI | RCATGY | 2 cut(s) | 1558, 2150 |
| XhoI | CTCGAG | 2 cut(s) | 34, 616 |
| XmaI | CCCGGG | 1 cut(s) | 1855 |
| XmiI | GTMKAC | 1 cut(s) | 1750 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2004, 2164 |
| XspI | CTAG | 2 cut(s) | 671, 1464 |
| ZrmI | AGTACT | 2 cut(s) | 1683, 2448 |
| Zsp2I | ATGCAT | 1 cut(s) | 1560 |