RLG00000025505
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
46242770 .. 46246510
3741 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025505

Sequence Viewer

Length: 1104 bp
ATGTGGTTCCCTGCAATATTCAGTTCTGCAGGGTGGTTTAGTATAGCTTTTGCAAAGAATGCTTGGTGGCTGGACATTGGAAGATTGTCATTGGGATTCAGTGTTGGTATCATTTACTATGTGGTGCCTGTCTACATAGCAGAAATAACACCCAAGGATCTTCGAGGACGGTTCACTTCAGCTAACCAGCTGCTGATTAGCTGTGGCTTTTCATTGTTCTTTTTGATTGGAAATGCTCTACATTGGCGCACCATGGCTGTACTCGGCGCTATTCCATCCCTACTGCAAATTGTAGGTTTATTCTTCATTCCAGAGTCTCCAAGATGGTTGGCTAAAGTTGGTAGACTAACAGACCTTGAAGCTGTGCTGCAGCGTCTTAGAGGAAGGAATGCTTCTGTTGCTCAAGAAGCAGCTGATATCATGGAGTATACAGAAATGTTTCAGAAAAACTCAGGAAGAATACTAGACTTGTTCCAGCGTAGATATACTCACTCACTGACTGTTGGAGTTGGGCTAATGTTACTACAGCAATTTTCTGGGGTCAATGCAGTAGCTTATTATGCAAGCAGTATATTTATAGATGCTGATTTTTCAAGTACCATTGGGACAGTATCATTGGCTATTATTGGGGTTCCAGCAATTGCATTGAGTGTGCTCTTAACAGATAAATGCGGAAGGCGACCACTTTTAAATGTTTCTGCTGCCGGAATGTGCTTGAGTTCATTTCTTATTGGCTTGGCTTTCTACTTCAAGGATCACAACTTGTGTGAGGAGCTCACTCCCATTTTTGTGTTTATCGGCATGATGGTTTATGGTGCATCGTACTCAATTGGTATAGCTGGATTGCCCTGGGTTATTATGTCAGAGACATTCCCAGTAAACGTCAAAGGTTCAGCTGGGAGCCTGTTGAGTTTGGTATATTGGTCATGTTCTTGGATTGTAACATATACATTCAACTACGTGATGGAATGGAGCTCAGCAGGAACATTTTTCTTCTTCTCAGCCATTAGCATTTTGACAATTCTGTTCGTAACAAAGATAGTGCCGGAAACTAAGGGGAGAAATCTAGAAGAACTTCAAGCATCAATCTCCCATTTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

368

Amino Acids

40.64

Weight (kDa)

8.23

Isoelectric Point (pI)

35.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 5 - 360 4.9e-80 Sugar (and other) transporter
MFS_1 PF07690 6 - 309 9.8e-18 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 124
AccI GTMKAC 3 cut(s) 132, 343, 428
AciI CCGC 1 cut(s) 672
AclWI GGATC 2 cut(s) 165, 762
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 3 cut(s) 261, 598, 824
AgsI TTSAA 5 cut(s) 359, 594, 751, 955, 1079
AjnI CCWGG 1 cut(s) 848
Alw21I GWGCWC 3 cut(s) 657, 777, 977
Alw26I GTCTC 2 cut(s) 321, 860
AlwI GGATC 2 cut(s) 165, 762
AlwNI CAGNNNCTG 1 cut(s) 193
ApeKI GCWGC 5 cut(s) 190, 367, 370, 410, 701
Asp700I GAANNNNTTC 2 cut(s) 438, 1074
AspLEI GCGC 2 cut(s) 249, 269
BanI GGYRCC 1 cut(s) 124
BanII GRGCYC 2 cut(s) 777, 977
Bbv12I GWGCWC 3 cut(s) 657, 777, 977
BbvI GCAGC 5 cut(s) 177, 354, 382, 422, 688
BccI CCATC 4 cut(s) 283, 318, 799, 958
BciT130I CCWGG 1 cut(s) 850
BcoDI GTCTC 2 cut(s) 321, 860
BfaI CTAG 2 cut(s) 464, 1067
BfmI CTRYAG 3 cut(s) 27, 368, 524
BfoI RGCGCY 1 cut(s) 270
BisI GCNGC 5 cut(s) 191, 368, 371, 411, 702
BlpI GCTNAGC 1 cut(s) 976
BlsI GCNGC 5 cut(s) 192, 369, 372, 412, 703
Bme1390I CCNGG 1 cut(s) 850
BmiI GGNNCC 4 cut(s) 8, 126, 633, 902
BmrFI CCNGG 1 cut(s) 850
BmrI ACTGGG 1 cut(s) 869
BmsI GCATC 3 cut(s) 571, 827, 1091
BmuI ACTGGG 1 cut(s) 869
Bpu1102I GCTNAGC 1 cut(s) 976
BpuEI CTTGAG 2 cut(s) 387, 736
BsaAI YACGTR 1 cut(s) 961
BsaJI CCNNGG 4 cut(s) 153, 252, 848, 849
Bse1I ACTGG 1 cut(s) 875
BseBI CCWGG 1 cut(s) 850
BseDI CCNNGG 4 cut(s) 153, 252, 848, 849
BseGI GGATG 1 cut(s) 275
BseMII CTCAG 3 cut(s) 465, 990, 1014
BseNI ACTGG 1 cut(s) 875
BseRI GAGGAG 1 cut(s) 785
BseXI GCAGC 5 cut(s) 177, 354, 382, 422, 688
BseYI CCCAGC 1 cut(s) 896
BshNI GGYRCC 1 cut(s) 124
BsiHKAI GWGCWC 3 cut(s) 657, 777, 977
BsiSI CCGG 2 cut(s) 705, 1046
BslFI GGGAC 1 cut(s) 619
BsmAI GTCTC 2 cut(s) 321, 860
BsmFI GGGAC 1 cut(s) 619
BsmI GAATGC 2 cut(s) 64, 394
Bsp1286I GDGCHC 3 cut(s) 657, 777, 977
Bsp143I GATC 2 cut(s) 157, 754
Bsp1720I GCTNAGC 1 cut(s) 976
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 1 cut(s) 672
BspCNI CTCAG 3 cut(s) 464, 989, 1013
BspLI GGNNCC 4 cut(s) 8, 126, 633, 902
BspMAI CTGCAG 2 cut(s) 31, 372
BspPI GGATC 2 cut(s) 165, 762
BspT107I GGYRCC 1 cut(s) 124
BsrI ACTGG 1 cut(s) 875
BssECI CCNNGG 4 cut(s) 153, 252, 848, 849
BssMI GATC 2 cut(s) 157, 754
BssNAI GTATAC 1 cut(s) 429
BssT1I CCWWGG 2 cut(s) 153, 252
Bst1107I GTATAC 1 cut(s) 429
Bst2UI CCWGG 1 cut(s) 850
Bst4CI ACNGT 3 cut(s) 171, 502, 610
BstAPI GCANNNNNTGC 1 cut(s) 59
BstBAI YACGTR 1 cut(s) 961
BstC8I GCNNGC 1 cut(s) 565
BstDEI CTNAG 5 cut(s) 377, 451, 976, 1000, 1053
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 275
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 2 cut(s) 249, 269
BstKTI GATC 2 cut(s) 160, 757
BstMAI GTCTC 2 cut(s) 321, 860
BstMBI GATC 2 cut(s) 157, 754
BstMWI GCNNNNNNNGC 4 cut(s) 59, 398, 407, 560
BstNI CCWGG 1 cut(s) 850
BstSCI CCNGG 1 cut(s) 848
BstSFI CTRYAG 3 cut(s) 27, 368, 524
BstV1I GCAGC 5 cut(s) 177, 354, 382, 422, 688
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BstZ17I GTATAC 1 cut(s) 429
BtgI CCRYGG 1 cut(s) 252
BtsCI GGATG 1 cut(s) 275
BtsIMutI CAGTG 2 cut(s) 106, 494
Cac8I GCNNGC 1 cut(s) 565
CaiI CAGNNNCTG 1 cut(s) 193
CfoI GCGC 2 cut(s) 249, 269
CseI GACGC 1 cut(s) 362
Csp6I GTAC 3 cut(s) 260, 597, 823
CviAII CATG 4 cut(s) 253, 421, 802, 927
CviQI GTAC 3 cut(s) 260, 597, 823
DdeI CTNAG 5 cut(s) 377, 451, 976, 1000, 1053
DpnI GATC 2 cut(s) 159, 756
DpnII GATC 2 cut(s) 157, 754
DraI TTTAAA 1 cut(s) 690
Ecl136II GAGCTC 2 cut(s) 775, 975
Eco130I CCWWGG 2 cut(s) 153, 252
Eco24I GRGCYC 2 cut(s) 777, 977
Eco32I GATATC 1 cut(s) 418
Eco53kI GAGCTC 2 cut(s) 775, 975
Eco57I CTGAAG 1 cut(s) 162
EcoICRI GAGCTC 2 cut(s) 775, 975
EcoRII CCWGG 1 cut(s) 848
EcoRV GATATC 1 cut(s) 418
EcoT14I CCWWGG 2 cut(s) 153, 252
EcoT38I GRGCYC 2 cut(s) 777, 977
ErhI CCWWGG 2 cut(s) 153, 252
FaeI CATG 4 cut(s) 256, 424, 805, 930
FalI AAGNNNNNCTT 2 cut(s) 376, 408
FaqI GGGAC 1 cut(s) 619
FatI CATG 4 cut(s) 252, 420, 801, 926
FblI GTMKAC 3 cut(s) 132, 343, 428
Fnu4HI GCNGC 5 cut(s) 191, 368, 371, 411, 702
FokI GGATG 1 cut(s) 262
FriOI GRGCYC 2 cut(s) 777, 977
Fsp4HI GCNGC 5 cut(s) 191, 368, 371, 411, 702
FspBI CTAG 2 cut(s) 464, 1067
GlaI GCGC 2 cut(s) 248, 268
GluI GCNGC 5 cut(s) 191, 368, 371, 411, 702
GsaI CCCAGC 1 cut(s) 900
HaeII RGCGCY 1 cut(s) 270
HapII CCGG 2 cut(s) 705, 1046
HgaI GACGC 1 cut(s) 362
HhaI GCGC 2 cut(s) 249, 269
Hin1II CATG 4 cut(s) 256, 424, 805, 930
Hin6I GCGC 2 cut(s) 247, 267
HinP1I GCGC 2 cut(s) 247, 267
HinfI GANTC 2 cut(s) 96, 314
HpaII CCGG 2 cut(s) 705, 1046
Hpy166II GTNNAC 5 cut(s) 133, 174, 344, 429, 880
Hpy188I TCNGA 2 cut(s) 444, 865
Hpy188III TCNNGA 4 cut(s) 311, 404, 453, 1067
Hpy8I GTNNAC 5 cut(s) 133, 174, 344, 429, 880
HpyAV CCTTC 2 cut(s) 378, 669
HpyCH4III ACNGT 3 cut(s) 171, 502, 610
HpyCH4IV ACGT 2 cut(s) 882, 960
HpyCH4V TGCA 9 cut(s) 14, 29, 53, 286, 370, 548, 563, 644, 818
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 398, 407, 560
HpyF3I CTNAG 5 cut(s) 377, 451, 976, 1000, 1053
HpySE526I ACGT 2 cut(s) 882, 960
Hsp92II CATG 4 cut(s) 256, 424, 805, 930
HspAI GCGC 2 cut(s) 247, 267
Kzo9I GATC 2 cut(s) 157, 754
LmnI GCTCC 3 cut(s) 772, 900, 972
Lsp1109I GCAGC 5 cut(s) 177, 354, 382, 422, 688
LweI GCATC 3 cut(s) 571, 827, 1091
MaeI CTAG 2 cut(s) 464, 1067
MaeII ACGT 2 cut(s) 882, 960
MaeIII GTNAC 3 cut(s) 519, 940, 1030
MalI GATC 2 cut(s) 159, 756
MboI GATC 2 cut(s) 157, 754
MboII GAAGA 7 cut(s) 93, 152, 295, 468, 985, 988, 1082
MfeI CAATTG 2 cut(s) 639, 828
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 3 cut(s) 657, 777, 977
MluCI AATT 5 cut(s) 288, 530, 639, 828, 1020
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 1 cut(s) 484
MnlI CCTC 3 cut(s) 158, 374, 763
MroXI GAANNNNTTC 2 cut(s) 438, 1074
MseI TTAA 3 cut(s) 659, 689, 1102
MslI CAYNNNNRTG 1 cut(s) 788
MspA1I CMGCKG 3 cut(s) 190, 413, 896
MspI CCGG 2 cut(s) 705, 1046
MspR9I CCNGG 1 cut(s) 850
MunI CAATTG 2 cut(s) 639, 828
Mva1269I GAATGC 2 cut(s) 64, 394
MvaI CCWGG 1 cut(s) 850
MwoI GCNNNNNNNGC 4 cut(s) 59, 398, 407, 560
NcoI CCATGG 1 cut(s) 252
NdeII GATC 2 cut(s) 157, 754
NlaIII CATG 4 cut(s) 256, 424, 805, 930
NlaIV GGNNCC 4 cut(s) 8, 126, 633, 902
NmeAIII GCCGAG 1 cut(s) 243
PasI CCCWGGG 1 cut(s) 849
PctI GAATGC 2 cut(s) 64, 394
PdmI GAANNNNTTC 2 cut(s) 438, 1074
PfeI GAWTC 1 cut(s) 96
PkrI GCNGC 5 cut(s) 192, 369, 372, 412, 703
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
Ppu21I YACGTR 1 cut(s) 961
Psp124BI GAGCTC 2 cut(s) 777, 977
Psp6I CCWGG 1 cut(s) 848
PspFI CCCAGC 1 cut(s) 896
PspGI CCWGG 1 cut(s) 848
PspN4I GGNNCC 4 cut(s) 8, 126, 633, 902
PstI CTGCAG 2 cut(s) 31, 372
PstNI CAGNNNCTG 1 cut(s) 193
PsuI RGATCY 1 cut(s) 157
PvuII CAGCTG 3 cut(s) 190, 413, 896
RsaI GTAC 3 cut(s) 261, 598, 824
RsaNI GTAC 3 cut(s) 260, 597, 823
RseI CAYNNNNRTG 1 cut(s) 788
SacI GAGCTC 2 cut(s) 777, 977
SaqAI TTAA 3 cut(s) 659, 689, 1102
SatI GCNGC 5 cut(s) 191, 368, 371, 411, 702
Sau3AI GATC 2 cut(s) 157, 754
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 1 cut(s) 850
SduI GDGCHC 3 cut(s) 657, 777, 977
SfaNI GCATC 3 cut(s) 571, 827, 1091
SfcI CTRYAG 3 cut(s) 27, 368, 524
SmiMI CAYNNNNRTG 1 cut(s) 788
SmlI CTYRAG 2 cut(s) 402, 715
SmoI CTYRAG 2 cut(s) 402, 715
Sse9I AATT 5 cut(s) 288, 530, 639, 828, 1020
SsiI CCGC 1 cut(s) 672
SspI AATATT 1 cut(s) 18
SspMI CTAG 2 cut(s) 464, 1067
SstI GAGCTC 2 cut(s) 777, 977
StyD4I CCNGG 1 cut(s) 848
StyI CCWWGG 2 cut(s) 153, 252
TaaI ACNGT 3 cut(s) 171, 502, 610
TaiI ACGT 2 cut(s) 885, 963
TaqI TCGA 1 cut(s) 163
TasI AATT 5 cut(s) 288, 530, 639, 828, 1020
TatI WGTACW 1 cut(s) 259
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 3 cut(s) 659, 689, 1102
Tru9I TTAA 3 cut(s) 659, 689, 1102
TscAI CASTG 2 cut(s) 106, 501
TseI GCWGC 5 cut(s) 190, 367, 370, 410, 701
TspDTI ATGAA 4 cut(s) 201, 295, 711, 1088
TspRI CASTG 2 cut(s) 106, 501
XbaI TCTAGA 1 cut(s) 1066
XmiI GTMKAC 3 cut(s) 132, 343, 428
XmnI GAANNNNTTC 2 cut(s) 438, 1074
XspI CTAG 2 cut(s) 464, 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.