Rh3CG053900
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000401
Physical Location & Seq
Forward (+)
3741746 .. 3744402
2657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG053900.1

Sequence Viewer

Length: 843 bp
ATGGAAGAAGGGTTACTAATGGCAGGGTCAAAGTCCAATATTAATGGAGCTTCAGGTGATTGCAGTGACGTCATGAACCCAAGTGGGTCCTCCTCAGCCACCCCTGTTGTGGTCCTGAGCACATTGGTGGCTCTCTGTGGTGCCTTTGGCTATGGCTGTGCTATAGGATATTCATCCTCTGCTGAATCAGGAATTCTGGACGACTTGGGCCTTACTGTTGCAGAATACTCAGTTTTTGGTTCAATAATGACAATTGGAGGAATGATGGGTGCAGTAATAAATGGGAAGATAACCGATCTTATTGGTCGTAGAGGTACAATGTGGCTGTCTGAAACATTCAGTGTTGCAGGATGGCTCACCATAGCATTTGCACAGAATGCTTGGTGGCTTGATTTAGGACGGTTGTCAGTGGGATTCGGCGTTGGTCTAATTTGCTACGTGGTACCTGTATACATAGCAGAAATAACACCCAAGGATCTTAGAGGAAGATTTACTTCAGCTACTCAGTTGATGTGTAGTTGCGGCTTAGCACTAGCCTTTTTCCTTGGAAATGTCATAACCTGGCGGACCTTGGCGGTTATCGGTGCCATTCCATCTCTTGTACACATTACAGGCCTATTTTTTATTCCAGAGTCTCCAAGGTGGCTGGCCAAAATTGGTAGGCACAAGGAATTTGAAGCGGCTCTTCAGAGACTGAGAGGAAAGCATGCCGACATATCTCAAGAAGCAGCTGAAATAATGCATTATACAGAAATGTTTCAGCAGCAGTCAGAAAAAGTCCTAGACTTGTTCCAAAAGAGATATGCTTACTCACCTAAGAAGCACGGAAACGGGTTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

280

Amino Acids

30.14

Weight (kDa)

6.95

Isoelectric Point (pI)

40.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 45 - 224 2.3e-20 Major Facilitator Superfamily
Sugar_tr PF00083 63 - 266 2.6e-42 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 72
Acc65I GGTACC 1 cut(s) 442
AccB1I GGYRCC 3 cut(s) 140, 442, 584
AccI GTMKAC 1 cut(s) 450
AciI CCGC 4 cut(s) 522, 565, 575, 680
AclWI GGATC 1 cut(s) 483
AcoI YGGCCR 1 cut(s) 648
AcsI RAATTY 2 cut(s) 192, 671
AcuI CTGAAG 3 cut(s) 36, 480, 671
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 3 cut(s) 316, 444, 603
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 3 cut(s) 243, 677, 838
AjnI CCWGG 1 cut(s) 560
AleI CACNNNNGTG 1 cut(s) 125
AluBI AGCT 3 cut(s) 50, 500, 731
AluI AGCT 3 cut(s) 50, 500, 731
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 2 cut(s) 639, 685
AlwI GGATC 1 cut(s) 483
AlwNI CAGNNNCTG 1 cut(s) 694
AoxI GGCC 3 cut(s) 208, 613, 648
ApeKI GCWGC 2 cut(s) 728, 763
ApoI RAATTY 2 cut(s) 192, 671
AseI ATTAAT 1 cut(s) 42
Asp700I GAANNNNTTC 1 cut(s) 756
Asp718I GGTACC 1 cut(s) 442
AspS9I GGNCC 4 cut(s) 87, 112, 208, 567
AsuHPI GGTGA 3 cut(s) 68, 349, 804
AvaII GGWCC 3 cut(s) 87, 112, 567
BalI TGGCCA 1 cut(s) 650
BanI GGYRCC 3 cut(s) 140, 442, 584
BarI GAAGNNNNNNTAC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 122
BbvCI CCTCAGC 1 cut(s) 94
BbvI GCAGC 2 cut(s) 740, 775
BccI CCATC 3 cut(s) 259, 345, 601
BciT130I CCWGG 1 cut(s) 562
BcoDI GTCTC 2 cut(s) 639, 685
BfaI CTAG 2 cut(s) 533, 782
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 4 cut(s) 523, 681, 729, 764
BlpI GCTNAGC 1 cut(s) 526
BlsI GCNGC 4 cut(s) 524, 682, 730, 765
Bme1390I CCNGG 1 cut(s) 562
Bme18I GGWCC 3 cut(s) 87, 112, 567
BmgT120I GGNCC 4 cut(s) 87, 112, 208, 567
BmiI GGNNCC 4 cut(s) 88, 142, 444, 586
BmrFI CCNGG 1 cut(s) 562
BoxI GACNNNNGTC 1 cut(s) 403
Bpu10I CCTNAGC 2 cut(s) 94, 116
Bpu1102I GCTNAGC 1 cut(s) 526
BpuEI CTTGAG 1 cut(s) 705
BsaAI YACGTR 1 cut(s) 439
BsaBI GATNNNNATC 1 cut(s) 172
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 4 cut(s) 471, 544, 570, 638
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse8I GATNNNNATC 1 cut(s) 172
BseBI CCWGG 1 cut(s) 562
BseDI CCNNGG 4 cut(s) 471, 544, 570, 638
BseGI GGATG 2 cut(s) 173, 356
BseJI GATNNNNATC 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 5 cut(s) 107, 108, 243, 518, 686
BseRI GAGGAG 1 cut(s) 82
BseXI GCAGC 2 cut(s) 740, 775
BsgI GTGCAG 1 cut(s) 291
BshFI GGCC 3 cut(s) 210, 615, 650
BshNI GGYRCC 3 cut(s) 140, 442, 584
BsiHKAI GWGCWC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 2 cut(s) 639, 685
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 3 cut(s) 210, 615, 650
Bsp1286I GDGCHC 1 cut(s) 122
Bsp1407I TGTACA 1 cut(s) 601
Bsp143I GATC 2 cut(s) 295, 475
Bsp1720I GCTNAGC 1 cut(s) 526
BspACI CCGC 4 cut(s) 522, 565, 575, 680
BspANI GGCC 3 cut(s) 210, 615, 650
BspCNI CTCAG 5 cut(s) 107, 108, 242, 517, 687
BspHI TCATGA 1 cut(s) 72
BspLI GGNNCC 4 cut(s) 88, 142, 444, 586
BspPI GGATC 1 cut(s) 483
BspQI GCTCTTC 1 cut(s) 690
BspT107I GGYRCC 3 cut(s) 140, 442, 584
BsrGI TGTACA 1 cut(s) 601
BssECI CCNNGG 4 cut(s) 471, 544, 570, 638
BssMI GATC 2 cut(s) 295, 475
BssNAI GTATAC 1 cut(s) 451
BssNI GRCGYC 1 cut(s) 69
BssT1I CCWWGG 4 cut(s) 471, 544, 570, 638
Bst1107I GTATAC 1 cut(s) 451
Bst2UI CCWGG 1 cut(s) 562
Bst4CI ACNGT 2 cut(s) 217, 402
Bst6I CTCTTC 1 cut(s) 690
BstACI GRCGYC 1 cut(s) 69
BstAPI GCANNNNNTGC 1 cut(s) 377
BstAUI TGTACA 1 cut(s) 601
BstBAI YACGTR 1 cut(s) 439
BstC8I GCNNGC 2 cut(s) 648, 708
BstDEI CTNAG 8 cut(s) 94, 116, 229, 479, 504, 526, 695, 816
BstF5I GGATG 2 cut(s) 173, 356
BstKTI GATC 2 cut(s) 298, 478
BstMAI GTCTC 2 cut(s) 639, 685
BstMBI GATC 2 cut(s) 295, 475
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstNI CCWGG 1 cut(s) 562
BstNSI RCATGY 1 cut(s) 710
BstPAI GACNNNNGTC 1 cut(s) 403
BstSCI CCNGG 1 cut(s) 560
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 740, 775
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BstZ17I GTATAC 1 cut(s) 451
BsuRI GGCC 3 cut(s) 210, 615, 650
BtsCI GGATG 2 cut(s) 173, 356
BtsI GCAGTG 1 cut(s) 70
BtsIMutI CAGTG 3 cut(s) 70, 346, 414
Cac8I GCNNGC 2 cut(s) 648, 708
CaiI CAGNNNCTG 1 cut(s) 694
CciI TCATGA 1 cut(s) 72
Cfr13I GGNCC 4 cut(s) 87, 112, 208, 567
Csp6I GTAC 3 cut(s) 315, 443, 602
CspCI CAANNNNNGTGG 2 cut(s) 88, 123
CviAII CATG 2 cut(s) 73, 707
CviQI GTAC 3 cut(s) 315, 443, 602
DdeI CTNAG 8 cut(s) 94, 116, 229, 479, 504, 526, 695, 816
DpnI GATC 2 cut(s) 297, 477
DpnII GATC 2 cut(s) 295, 475
EaeI YGGCCR 1 cut(s) 648
Eam1104I CTCTTC 1 cut(s) 690
EarI CTCTTC 1 cut(s) 690
EciI GGCGGA 1 cut(s) 580
Eco130I CCWWGG 4 cut(s) 471, 544, 570, 638
Eco147I AGGCCT 1 cut(s) 615
Eco47I GGWCC 3 cut(s) 87, 112, 567
Eco57I CTGAAG 3 cut(s) 36, 480, 671
EcoO109I RGGNCCY 1 cut(s) 87
EcoRI GAATTC 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 560
EcoT14I CCWWGG 4 cut(s) 471, 544, 570, 638
EcoT22I ATGCAT 1 cut(s) 744
ErhI CCWWGG 4 cut(s) 471, 544, 570, 638
FaeI CATG 2 cut(s) 76, 710
FalI AAGNNNNNCTT 4 cut(s) 478, 510, 669, 701
FatI CATG 2 cut(s) 72, 706
FblI GTMKAC 1 cut(s) 450
Fnu4HI GCNGC 4 cut(s) 523, 681, 729, 764
FokI GGATG 2 cut(s) 160, 363
Fsp4HI GCNGC 4 cut(s) 523, 681, 729, 764
FspBI CTAG 2 cut(s) 533, 782
GluI GCNGC 4 cut(s) 523, 681, 729, 764
HaeIII GGCC 3 cut(s) 210, 615, 650
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 2 cut(s) 76, 710
HinfI GANTC 3 cut(s) 185, 414, 632
HphI GGTGA 3 cut(s) 68, 349, 804
Hpy166II GTNNAC 2 cut(s) 451, 604
Hpy188I TCNGA 3 cut(s) 331, 690, 772
Hpy188III TCNNGA 6 cut(s) 73, 115, 189, 197, 629, 722
Hpy8I GTNNAC 2 cut(s) 451, 604
HpyCH4III ACNGT 2 cut(s) 217, 402
HpyCH4IV ACGT 2 cut(s) 69, 438
HpyCH4V TGCA 6 cut(s) 63, 221, 272, 347, 371, 742
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 8 cut(s) 94, 116, 229, 479, 504, 526, 695, 816
HpySE526I ACGT 2 cut(s) 69, 438
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 2 cut(s) 76, 710
KpnI GGTACC 1 cut(s) 446
Kzo9I GATC 2 cut(s) 295, 475
LguI GCTCTTC 1 cut(s) 690
LmnI GCTCC 1 cut(s) 47
Lsp1109I GCAGC 2 cut(s) 740, 775
MaeI CTAG 2 cut(s) 533, 782
MaeII ACGT 2 cut(s) 69, 438
MaeIII GTNAC 2 cut(s) 12, 65
MalI GATC 2 cut(s) 297, 477
MboI GATC 2 cut(s) 295, 475
MboII GAAGA 4 cut(s) 17, 298, 498, 677
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 1 cut(s) 122
MlsI TGGCCA 1 cut(s) 650
MluCI AATT 5 cut(s) 192, 252, 429, 654, 671
MluNI TGGCCA 1 cut(s) 650
MlyI GAGTC 1 cut(s) 641
MnlI CCTC 7 cut(s) 100, 103, 187, 251, 305, 476, 692
Mox20I TGGCCA 1 cut(s) 650
Mph1103I ATGCAT 1 cut(s) 744
MroXI GAANNNNTTC 1 cut(s) 756
MscI TGGCCA 1 cut(s) 650
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 125
Msp20I TGGCCA 1 cut(s) 650
MspA1I CMGCKG 1 cut(s) 731
MspR9I CCNGG 1 cut(s) 562
MunI CAATTG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 382
MvaI CCWGG 1 cut(s) 562
MwoI GCNNNNNNNGC 1 cut(s) 377
NdeII GATC 2 cut(s) 295, 475
NlaIII CATG 2 cut(s) 76, 710
NlaIV GGNNCC 4 cut(s) 88, 142, 444, 586
NmuCI GTSAC 1 cut(s) 65
NsiI ATGCAT 1 cut(s) 744
NspI RCATGY 1 cut(s) 710
OliI CACNNNNGTG 1 cut(s) 125
PaeI GCATGC 1 cut(s) 710
PagI TCATGA 1 cut(s) 72
PceI AGGCCT 1 cut(s) 615
PciSI GCTCTTC 1 cut(s) 690
PctI GAATGC 1 cut(s) 382
PdmI GAANNNNTTC 1 cut(s) 756
PfeI GAWTC 2 cut(s) 185, 414
PkrI GCNGC 4 cut(s) 524, 682, 730, 765
PleI GAGTC 1 cut(s) 640
PpsI GAGTC 1 cut(s) 640
Ppu21I YACGTR 1 cut(s) 439
PpuMI RGGWCCY 1 cut(s) 87
PshAI GACNNNNGTC 1 cut(s) 403
PshBI ATTAAT 1 cut(s) 42
Psp5II RGGWCCY 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 560
PspGI CCWGG 1 cut(s) 560
PspN4I GGNNCC 4 cut(s) 88, 142, 444, 586
PspPI GGNCC 4 cut(s) 87, 112, 208, 567
PspPPI RGGWCCY 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 694
PsuI RGATCY 1 cut(s) 475
PvuII CAGCTG 1 cut(s) 731
RsaI GTAC 3 cut(s) 316, 444, 603
RsaNI GTAC 3 cut(s) 315, 443, 602
RseI CAYNNNNRTG 1 cut(s) 125
SapI GCTCTTC 1 cut(s) 690
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 4 cut(s) 523, 681, 729, 764
Sau3AI GATC 2 cut(s) 295, 475
Sau96I GGNCC 4 cut(s) 87, 112, 208, 567
SchI GAGTC 1 cut(s) 641
ScrFI CCNGG 1 cut(s) 562
SduI GDGCHC 1 cut(s) 122
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 3 cut(s) 87, 112, 567
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 720
SmoI CTYRAG 1 cut(s) 720
SphI GCATGC 1 cut(s) 710
Sse9I AATT 5 cut(s) 192, 252, 429, 654, 671
SseBI AGGCCT 1 cut(s) 615
SsiI CCGC 4 cut(s) 522, 565, 575, 680
SspI AATATT 1 cut(s) 40
SspMI CTAG 2 cut(s) 533, 782
StuI AGGCCT 1 cut(s) 615
StyD4I CCNGG 1 cut(s) 560
StyI CCWWGG 4 cut(s) 471, 544, 570, 638
TaaI ACNGT 2 cut(s) 217, 402
TaiI ACGT 2 cut(s) 72, 441
TasI AATT 5 cut(s) 192, 252, 429, 654, 671
TatI WGTACW 1 cut(s) 601
TauI GCSGC 2 cut(s) 525, 683
TfiI GAWTC 2 cut(s) 185, 414
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 3 cut(s) 70, 346, 414
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 2 cut(s) 728, 763
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 2 cut(s) 89, 162
TspGWI ACGGA 1 cut(s) 840
TspRI CASTG 3 cut(s) 70, 346, 414
VpaK11BI GGWCC 3 cut(s) 87, 112, 567
VspI ATTAAT 1 cut(s) 42
XapI RAATTY 2 cut(s) 192, 671
XceI RCATGY 1 cut(s) 710
XcmI CCANNNNNNNNNTGG 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 450
XmnI GAANNNNTTC 1 cut(s) 756
XspI CTAG 2 cut(s) 533, 782
ZraI GACGTC 1 cut(s) 70
Zsp2I ATGCAT 1 cut(s) 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.