Rh3DG055000
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
3741746 .. 3743812
2067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG055000.1

Sequence Viewer

Length: 528 bp
ATGGAAGAAGGGTTACTAATGGCAGGGTCAAAGTCCAATATTAATGGAGCTTCAGGTGATTGCAGTGACGTCATGAACCCAAGTGGGTCCTCCTCAGCCACCCCTGTTGTGGTCCTGAGCACATTGGTGGCTCTCTGTGGTGCCTTTGGCTATGGCTGTGCTATAGGATATTCATCCTCTGCTGAATCAGGAATTCTGGACGACTTGGGCCTTACTGTTGCAGAATACTCAGTTTTTGGTTCAATAATGACAATTGGAGGAATGATGGGTGCAGTAATAAATGGGAAGATAACCGATCTTATTGGTCGTAGAGGTACAATGTGGCTGTCTGAAACATTCAGTGTTGCAGGATGGCTCACCATAGCATTTGCACAGAATGCTTGGTGGCTTGATTTAGGACGGTTGTCAGTGGGATTCGGCGTTGGTCTAATTTGCTACGTGGTACCTGTATACATAGCAGAAATAACACCCAAGGATCTTAGAGGAAGATTTACTTCAGCTACTCAGAGTCTCCAAGGTGGCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

175

Amino Acids

18.14

Weight (kDa)

4.46

Isoelectric Point (pI)

32.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 45 - 167 1.1e-12 Major Facilitator Superfamily
Sugar_tr PF00083 63 - 170 3e-22 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 72
Acc65I GGTACC 1 cut(s) 442
AccB1I GGYRCC 2 cut(s) 140, 442
AccI GTMKAC 1 cut(s) 450
AclWI GGATC 1 cut(s) 483
AcsI RAATTY 1 cut(s) 192
AcuI CTGAAG 2 cut(s) 36, 480
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 2 cut(s) 316, 444
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 1 cut(s) 243
AleI CACNNNNGTG 1 cut(s) 125
AluBI AGCT 2 cut(s) 50, 500
AluI AGCT 2 cut(s) 50, 500
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 1 cut(s) 515
AlwI GGATC 1 cut(s) 483
AoxI GGCC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 192
AseI ATTAAT 1 cut(s) 42
Asp718I GGTACC 1 cut(s) 442
AspS9I GGNCC 3 cut(s) 87, 112, 208
AsuHPI GGTGA 2 cut(s) 68, 349
AvaII GGWCC 2 cut(s) 87, 112
BanI GGYRCC 2 cut(s) 140, 442
BarI GAAGNNNNNNTAC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 122
BbvCI CCTCAGC 1 cut(s) 94
BccI CCATC 2 cut(s) 259, 345
BcoDI GTCTC 1 cut(s) 515
BfmI CTRYAG 1 cut(s) 162
Bme18I GGWCC 2 cut(s) 87, 112
BmgT120I GGNCC 3 cut(s) 87, 112, 208
BmiI GGNNCC 3 cut(s) 88, 142, 444
BoxI GACNNNNGTC 1 cut(s) 403
Bpu10I CCTNAGC 2 cut(s) 94, 116
BsaAI YACGTR 1 cut(s) 439
BsaBI GATNNNNATC 1 cut(s) 172
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 471, 514
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse8I GATNNNNATC 1 cut(s) 172
BseDI CCNNGG 2 cut(s) 471, 514
BseGI GGATG 2 cut(s) 173, 356
BseJI GATNNNNATC 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 4 cut(s) 107, 108, 243, 518
BseRI GAGGAG 1 cut(s) 82
BsgI GTGCAG 1 cut(s) 291
BshFI GGCC 1 cut(s) 210
BshNI GGYRCC 2 cut(s) 140, 442
BsiHKAI GWGCWC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 515
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 2 cut(s) 295, 475
BspANI GGCC 1 cut(s) 210
BspCNI CTCAG 4 cut(s) 107, 108, 242, 517
BspHI TCATGA 1 cut(s) 72
BspLI GGNNCC 3 cut(s) 88, 142, 444
BspPI GGATC 1 cut(s) 483
BspT107I GGYRCC 2 cut(s) 140, 442
BssECI CCNNGG 2 cut(s) 471, 514
BssMI GATC 2 cut(s) 295, 475
BssNAI GTATAC 1 cut(s) 451
BssNI GRCGYC 1 cut(s) 69
BssT1I CCWWGG 2 cut(s) 471, 514
Bst1107I GTATAC 1 cut(s) 451
Bst4CI ACNGT 2 cut(s) 217, 402
BstACI GRCGYC 1 cut(s) 69
BstAPI GCANNNNNTGC 1 cut(s) 377
BstBAI YACGTR 1 cut(s) 439
BstDEI CTNAG 5 cut(s) 94, 116, 229, 479, 504
BstF5I GGATG 2 cut(s) 173, 356
BstKTI GATC 2 cut(s) 298, 478
BstMAI GTCTC 1 cut(s) 515
BstMBI GATC 2 cut(s) 295, 475
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstPAI GACNNNNGTC 1 cut(s) 403
BstSFI CTRYAG 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BstZ17I GTATAC 1 cut(s) 451
BsuRI GGCC 1 cut(s) 210
BtsCI GGATG 2 cut(s) 173, 356
BtsI GCAGTG 1 cut(s) 70
BtsIMutI CAGTG 3 cut(s) 70, 346, 414
CciI TCATGA 1 cut(s) 72
Cfr13I GGNCC 3 cut(s) 87, 112, 208
Csp6I GTAC 2 cut(s) 315, 443
CspCI CAANNNNNGTGG 2 cut(s) 88, 123
CviAII CATG 1 cut(s) 73
CviQI GTAC 2 cut(s) 315, 443
DdeI CTNAG 5 cut(s) 94, 116, 229, 479, 504
DpnI GATC 2 cut(s) 297, 477
DpnII GATC 2 cut(s) 295, 475
Eco130I CCWWGG 2 cut(s) 471, 514
Eco47I GGWCC 2 cut(s) 87, 112
Eco57I CTGAAG 2 cut(s) 36, 480
EcoO109I RGGNCCY 1 cut(s) 87
EcoRI GAATTC 1 cut(s) 192
EcoT14I CCWWGG 2 cut(s) 471, 514
ErhI CCWWGG 2 cut(s) 471, 514
FaeI CATG 1 cut(s) 76
FaiI YATR 6 cut(s) 74, 153, 164, 362, 451, 455
FalI AAGNNNNNCTT 2 cut(s) 478, 510
FatI CATG 1 cut(s) 72
FblI GTMKAC 1 cut(s) 450
FokI GGATG 2 cut(s) 160, 363
HaeIII GGCC 1 cut(s) 210
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 1 cut(s) 76
HinfI GANTC 3 cut(s) 185, 414, 508
HphI GGTGA 2 cut(s) 68, 349
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 2 cut(s) 331, 507
Hpy188III TCNNGA 4 cut(s) 73, 115, 189, 197
Hpy8I GTNNAC 1 cut(s) 451
HpyCH4III ACNGT 2 cut(s) 217, 402
HpyCH4IV ACGT 2 cut(s) 69, 438
HpyCH4V TGCA 5 cut(s) 63, 221, 272, 347, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 5 cut(s) 94, 116, 229, 479, 504
HpySE526I ACGT 2 cut(s) 69, 438
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 1 cut(s) 76
KpnI GGTACC 1 cut(s) 446
Kzo9I GATC 2 cut(s) 295, 475
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 9 cut(s) 9, 39, 117, 128, 174, 182, 333, 459, 508
MaeII ACGT 2 cut(s) 69, 438
MaeIII GTNAC 2 cut(s) 12, 65
MalI GATC 2 cut(s) 297, 477
MboI GATC 2 cut(s) 295, 475
MboII GAAGA 3 cut(s) 17, 298, 498
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 3 cut(s) 192, 252, 429
MlyI GAGTC 1 cut(s) 517
MnlI CCTC 6 cut(s) 100, 103, 187, 251, 305, 476
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 125
MunI CAATTG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 382
MwoI GCNNNNNNNGC 1 cut(s) 377
NdeII GATC 2 cut(s) 295, 475
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 3 cut(s) 88, 142, 444
NmuCI GTSAC 1 cut(s) 65
OliI CACNNNNGTG 1 cut(s) 125
PagI TCATGA 1 cut(s) 72
PctI GAATGC 1 cut(s) 382
PfeI GAWTC 2 cut(s) 185, 414
PleI GAGTC 1 cut(s) 516
PpsI GAGTC 1 cut(s) 516
Ppu21I YACGTR 1 cut(s) 439
PpuMI RGGWCCY 1 cut(s) 87
PshAI GACNNNNGTC 1 cut(s) 403
PshBI ATTAAT 1 cut(s) 42
Psp5II RGGWCCY 1 cut(s) 87
PspN4I GGNNCC 3 cut(s) 88, 142, 444
PspPI GGNCC 3 cut(s) 87, 112, 208
PspPPI RGGWCCY 1 cut(s) 87
PsuI RGATCY 1 cut(s) 475
RsaI GTAC 2 cut(s) 316, 444
RsaNI GTAC 2 cut(s) 315, 443
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 1 cut(s) 42
Sau3AI GATC 2 cut(s) 295, 475
Sau96I GGNCC 3 cut(s) 87, 112, 208
SchI GAGTC 1 cut(s) 517
SduI GDGCHC 1 cut(s) 122
SetI ASST 8 cut(s) 52, 58, 72, 316, 441, 448, 502, 520
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 2 cut(s) 87, 112
SmiMI CAYNNNNRTG 1 cut(s) 125
Sse9I AATT 3 cut(s) 192, 252, 429
SspI AATATT 1 cut(s) 40
StyI CCWWGG 2 cut(s) 471, 514
TaaI ACNGT 2 cut(s) 217, 402
TaiI ACGT 2 cut(s) 72, 441
TasI AATT 3 cut(s) 192, 252, 429
TfiI GAWTC 2 cut(s) 185, 414
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 3 cut(s) 70, 346, 414
TseFI GTSAC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 2 cut(s) 89, 162
TspRI CASTG 3 cut(s) 70, 346, 414
VpaK11BI GGWCC 2 cut(s) 87, 112
VspI ATTAAT 1 cut(s) 42
XapI RAATTY 1 cut(s) 192
XcmI CCANNNNNNNNNTGG 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 450
ZraI GACGTC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.