Rh3DG054400
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
3706600 .. 3710381
3782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG054400.1

Sequence Viewer

Length: 1122 bp
ATGCATTGTTTTGTAATAATCAAACAAGGCATGGCAACAGAAACCATGGAGGGAGCACTACTAAGTATTTCCAATGTCGATGGGGAATCCTCCTCCTCCTCCTCCGCAGTCACTAGTGTGATTGTGATGAGCACTTTAGTGGCCCTCTGTGGTTCACTCTCCACCGGCTGTGCTACAGGGTATTCATCAGCTGCTGAATCTGGAATTGTGGAAGACTTGGACCTTACTCTTGTAGCATACTCAGTTTTTGGTTCAATAATGACAATTGGAGGTGTCATTGGTTCATTGATGAATGGCAGAGTAACTGATCTCATCGGTCGTAGAGCTACAATGTGGTTGTCTGCAATATTCAGTACTGCAGGGTGGCTCACTATAGCATTTGCACAGAATGCTTTGTGGCTGGATATTGGAAGACTCTCAAGCGGATTTAGCGTCGGGATAATTTACTACGTGGTACCAGTGTACATAGCAGAAATAACGCCCAAGGACCTCAGAGGAAGATTCACTTCAGCTAATCAGGTTGGAGTTGGGCTACTGTTACTGCAGCAATTTGGGGGTGCAAATGCCGTAGCTTATTACGGAAGCTCTATATTTGAAGATGCCGGTTTTTCAAGTAGCATTGGGACTATTTCACTGGCTATTATCGGGATACCTGTTATTGCATTGAGTGTGCTCTTAACGGACAAATTGGGAAGACGACCACTTCTACTGGTTTCTGCTGCTGGAATGTGCTTGAGTTTGTTTCTTGTGGGCTTGGCTTTCTGCTTTCAGGACCTACACCAGTGGGAAGCGCTCACTCCCATTCTTGTGTTTATCGGCATGTTGGGTTATGGTGCATCATACTTGATTGGCATGGCAGGTTTACCCTGGGTTATTATGTCAGAGATATTCCCAGTAAACATTAAAGGTTCGGCTGGAAGCCTGTTAAGTTTGGTTTATTGGTCTTGCTCCTGGATAGTAACATACACTTTCAATTTTATTATGGAATGGAGCTCAGAAGGAACATTTTTATTCTTCTCAGTGATTAACGGTTTAGCAGTTCTGTTCGTAGCAAAGCTTGTGCCAGAAACCAAGGGGCGAACTCTAGAAGAAATACAAGCATCAATCTCCCATCAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

373

Amino Acids

39.64

Weight (kDa)

4.97

Isoelectric Point (pI)

32.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 45 - 175 2e-20 Sugar (and other) transporter
MFS_1 PF07690 48 - 178 5.8e-14 Major Facilitator Superfamily
Sugar_tr PF00083 175 - 367 4.9e-42 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 848
Acc65I GGTACC 1 cut(s) 454
AccB1I GGYRCC 1 cut(s) 454
AciI CCGC 2 cut(s) 105, 423
AcuI CTGAAG 1 cut(s) 492
AfaI GTAC 3 cut(s) 355, 456, 464
AfeI AGCGCT 1 cut(s) 792
AgsI TTSAA 4 cut(s) 255, 596, 612, 973
AhlI ACTAGT 1 cut(s) 113
AjnI CCWGG 2 cut(s) 866, 950
AleI CACNNNNGTG 2 cut(s) 116, 137
AluBI AGCT 7 cut(s) 191, 326, 512, 572, 585, 993, 1057
AluI AGCT 7 cut(s) 191, 326, 512, 572, 585, 993, 1057
Alw21I GWGCWC 4 cut(s) 58, 134, 675, 995
AlwNI CAGNNNCTG 1 cut(s) 194
Aor51HI AGCGCT 1 cut(s) 792
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 3 cut(s) 191, 544, 719
Asp718I GGTACC 1 cut(s) 454
AspLEI GCGC 1 cut(s) 793
AspS9I GGNCC 4 cut(s) 142, 220, 487, 772
AvaII GGWCC 3 cut(s) 220, 487, 772
BaeI ACNNNNGTAYC 2 cut(s) 446, 479
BanI GGYRCC 1 cut(s) 454
BanII GRGCYC 1 cut(s) 995
BbsI GAAGAC 3 cut(s) 219, 418, 700
Bbv12I GWGCWC 4 cut(s) 58, 134, 675, 995
BbvI GCAGC 3 cut(s) 178, 556, 706
BccI CCATC 2 cut(s) 74, 1119
BceAI ACGGC 1 cut(s) 551
BciT130I CCWGG 2 cut(s) 868, 952
BciVI GTATCC 1 cut(s) 642
BcuI ACTAGT 1 cut(s) 113
BfaI CTAG 2 cut(s) 114, 1085
BfmI CTRYAG 4 cut(s) 174, 357, 372, 542
BfoI RGCGCY 1 cut(s) 794
BfuAI ACCTGC 1 cut(s) 848
BfuI GTATCC 1 cut(s) 642
BisI GCNGC 3 cut(s) 192, 545, 720
BlsI GCNGC 3 cut(s) 193, 546, 721
BmcAI AGTACT 1 cut(s) 355
Bme1390I CCNGG 2 cut(s) 868, 952
Bme18I GGWCC 3 cut(s) 220, 487, 772
BmgT120I GGNCC 4 cut(s) 142, 220, 487, 772
BmiI GGNNCC 1 cut(s) 456
BmrFI CCNGG 2 cut(s) 868, 952
BmrI ACTGGG 1 cut(s) 887
BmsI GCATC 3 cut(s) 589, 845, 1109
BmuI ACTGGG 1 cut(s) 887
BpiI GAAGAC 3 cut(s) 219, 418, 700
BpuEI CTTGAG 2 cut(s) 403, 754
BsaAI YACGTR 1 cut(s) 451
BsaJI CCNNGG 5 cut(s) 45, 483, 866, 867, 1071
Bse118I RCCGGY 2 cut(s) 164, 602
Bse1I ACTGG 5 cut(s) 458, 639, 714, 781, 893
BseBI CCWGG 2 cut(s) 868, 952
BseDI CCNNGG 5 cut(s) 45, 483, 866, 867, 1071
BseMII CTCAG 4 cut(s) 255, 505, 1008, 1032
BseNI ACTGG 5 cut(s) 458, 639, 714, 781, 893
BseRI GAGGAG 4 cut(s) 82, 85, 88, 91
BseXI GCAGC 3 cut(s) 178, 556, 706
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 1 cut(s) 143
BshNI GGYRCC 1 cut(s) 454
BsiEI CGRYCG 1 cut(s) 319
BsiHKAI GWGCWC 4 cut(s) 58, 134, 675, 995
BsiSI CCGG 2 cut(s) 165, 603
BslFI GGGAC 1 cut(s) 637
BsmFI GGGAC 1 cut(s) 637
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 1 cut(s) 143
Bsp1286I GDGCHC 4 cut(s) 58, 134, 675, 995
Bsp1407I TGTACA 1 cut(s) 462
Bsp143I GATC 1 cut(s) 307
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 2 cut(s) 105, 423
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 4 cut(s) 254, 504, 1007, 1031
BspLI GGNNCC 1 cut(s) 456
BspMAI CTGCAG 2 cut(s) 361, 546
BspMI ACCTGC 1 cut(s) 848
BspT107I GGYRCC 1 cut(s) 454
BsrFI RCCGGY 2 cut(s) 164, 602
BsrGI TGTACA 1 cut(s) 462
BsrI ACTGG 5 cut(s) 458, 639, 714, 781, 893
BssAI RCCGGY 2 cut(s) 164, 602
BssECI CCNNGG 5 cut(s) 45, 483, 866, 867, 1071
BssMI GATC 1 cut(s) 307
BssT1I CCWWGG 3 cut(s) 45, 483, 1071
Bst2UI CCWGG 2 cut(s) 868, 952
Bst4CI ACNGT 2 cut(s) 537, 1031
BstAPI GCANNNNNTGC 1 cut(s) 389
BstAUI TGTACA 1 cut(s) 462
BstBAI YACGTR 1 cut(s) 451
BstDEI CTNAG 5 cut(s) 62, 241, 491, 994, 1018
BstDSI CCRYGG 1 cut(s) 45
BstH2I RGCGCY 1 cut(s) 794
BstHHI GCGC 1 cut(s) 793
BstKTI GATC 1 cut(s) 310
BstMBI GATC 1 cut(s) 307
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 2 cut(s) 389, 429
BstNI CCWGG 2 cut(s) 868, 952
BstNSI RCATGY 1 cut(s) 823
BstSCI CCNGG 2 cut(s) 866, 950
BstSFI CTRYAG 4 cut(s) 174, 357, 372, 542
BstV1I GCAGC 3 cut(s) 178, 556, 706
BstV2I GAAGAC 3 cut(s) 219, 418, 700
BsuI GTATCC 1 cut(s) 642
BsuRI GGCC 1 cut(s) 143
BtgI CCRYGG 1 cut(s) 45
BtsIMutI CAGTG 4 cut(s) 465, 632, 788, 1026
BveI ACCTGC 1 cut(s) 848
CaiI CAGNNNCTG 1 cut(s) 194
CfoI GCGC 1 cut(s) 793
Cfr10I RCCGGY 2 cut(s) 164, 602
Cfr13I GGNCC 4 cut(s) 142, 220, 487, 772
CseI GACGC 1 cut(s) 421
Csp6I GTAC 3 cut(s) 354, 455, 463
CviAII CATG 4 cut(s) 31, 46, 820, 853
CviQI GTAC 3 cut(s) 354, 455, 463
DdeI CTNAG 5 cut(s) 62, 241, 491, 994, 1018
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
Ecl136II GAGCTC 1 cut(s) 993
Eco130I CCWWGG 3 cut(s) 45, 483, 1071
Eco24I GRGCYC 1 cut(s) 995
Eco47I GGWCC 3 cut(s) 220, 487, 772
Eco47III AGCGCT 1 cut(s) 792
Eco53kI GAGCTC 1 cut(s) 993
Eco57I CTGAAG 1 cut(s) 492
EcoICRI GAGCTC 1 cut(s) 993
EcoO109I RGGNCCY 2 cut(s) 487, 772
EcoRII CCWGG 2 cut(s) 866, 950
EcoT14I CCWWGG 3 cut(s) 45, 483, 1071
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 995
ErhI CCWWGG 3 cut(s) 45, 483, 1071
FaeI CATG 4 cut(s) 34, 49, 823, 856
FalI AAGNNNNNCTT 2 cut(s) 490, 522
FaqI GGGAC 1 cut(s) 637
FatI CATG 4 cut(s) 30, 45, 819, 852
Fnu4HI GCNGC 3 cut(s) 192, 545, 720
FriOI GRGCYC 1 cut(s) 995
Fsp4HI GCNGC 3 cut(s) 192, 545, 720
FspBI CTAG 2 cut(s) 114, 1085
GlaI GCGC 1 cut(s) 792
GluI GCNGC 3 cut(s) 192, 545, 720
HaeII RGCGCY 1 cut(s) 794
HaeIII GGCC 1 cut(s) 143
HapII CCGG 2 cut(s) 165, 603
HgaI GACGC 1 cut(s) 421
HhaI GCGC 1 cut(s) 793
Hin1II CATG 4 cut(s) 34, 49, 823, 856
Hin6I GCGC 1 cut(s) 791
HinP1I GCGC 1 cut(s) 791
HindIII AAGCTT 1 cut(s) 1055
HinfI GANTC 4 cut(s) 86, 197, 414, 501
HpaII CCGG 2 cut(s) 165, 603
Hpy166II GTNNAC 4 cut(s) 155, 463, 863, 898
Hpy188I TCNGA 3 cut(s) 494, 883, 997
Hpy188III TCNNGA 5 cut(s) 201, 436, 646, 770, 1085
Hpy8I GTNNAC 4 cut(s) 155, 463, 863, 898
Hpy99I CGWCG 1 cut(s) 437
HpyAV CCTTC 1 cut(s) 992
HpyCH4III ACNGT 2 cut(s) 537, 1031
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 8 cut(s) 4, 344, 359, 383, 544, 560, 662, 836
HpyF10VI GCNNNNNNNGC 2 cut(s) 389, 429
HpyF3I CTNAG 5 cut(s) 62, 241, 491, 994, 1018
HpySE526I ACGT 1 cut(s) 450
Hsp92II CATG 4 cut(s) 34, 49, 823, 856
HspAI GCGC 1 cut(s) 791
KpnI GGTACC 1 cut(s) 458
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 3 cut(s) 53, 953, 990
Lsp1109I GCAGC 3 cut(s) 178, 556, 706
LweI GCATC 3 cut(s) 589, 845, 1109
MaeI CTAG 2 cut(s) 114, 1085
MaeII ACGT 1 cut(s) 450
MaeIII GTNAC 4 cut(s) 109, 301, 537, 958
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 7 cut(s) 224, 423, 510, 608, 705, 1006, 1100
MfeI CAATTG 1 cut(s) 264
MhlI GDGCHC 4 cut(s) 58, 134, 675, 995
MluCI AATT 6 cut(s) 204, 264, 441, 548, 686, 973
MlyI GAGTC 1 cut(s) 408
MmeI TCCRAC 1 cut(s) 502
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 4 cut(s) 677, 903, 926, 1026
MslI CAYNNNNRTG 3 cut(s) 116, 137, 806
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 2 cut(s) 165, 603
MspR9I CCNGG 2 cut(s) 868, 952
MunI CAATTG 1 cut(s) 264
Mva1269I GAATGC 1 cut(s) 394
MvaI CCWGG 2 cut(s) 868, 952
MwoI GCNNNNNNNGC 2 cut(s) 389, 429
NcoI CCATGG 1 cut(s) 45
NdeII GATC 1 cut(s) 307
NlaIII CATG 4 cut(s) 34, 49, 823, 856
NlaIV GGNNCC 1 cut(s) 456
NmuCI GTSAC 1 cut(s) 109
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 823
OliI CACNNNNGTG 2 cut(s) 116, 137
PasI CCCWGGG 1 cut(s) 867
PctI GAATGC 1 cut(s) 394
PfeI GAWTC 3 cut(s) 86, 197, 501
PfoI TCCNGGA 1 cut(s) 950
PkrI GCNGC 3 cut(s) 193, 546, 721
PleI GAGTC 1 cut(s) 408
PpsI GAGTC 1 cut(s) 408
Ppu21I YACGTR 1 cut(s) 451
PpuMI RGGWCCY 2 cut(s) 487, 772
Psp124BI GAGCTC 1 cut(s) 995
Psp5II RGGWCCY 2 cut(s) 487, 772
Psp6I CCWGG 2 cut(s) 866, 950
PspGI CCWGG 2 cut(s) 866, 950
PspN4I GGNNCC 1 cut(s) 456
PspPI GGNCC 4 cut(s) 142, 220, 487, 772
PspPPI RGGWCCY 2 cut(s) 487, 772
PstI CTGCAG 2 cut(s) 361, 546
PstNI CAGNNNCTG 1 cut(s) 194
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 3 cut(s) 355, 456, 464
RsaNI GTAC 3 cut(s) 354, 455, 463
RseI CAYNNNNRTG 3 cut(s) 116, 137, 806
SacI GAGCTC 1 cut(s) 995
SaqAI TTAA 4 cut(s) 677, 903, 926, 1026
SatI GCNGC 3 cut(s) 192, 545, 720
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 4 cut(s) 142, 220, 487, 772
ScaI AGTACT 1 cut(s) 355
SchI GAGTC 1 cut(s) 408
ScrFI CCNGG 2 cut(s) 868, 952
SduI GDGCHC 4 cut(s) 58, 134, 675, 995
SfaNI GCATC 3 cut(s) 589, 845, 1109
SfcI CTRYAG 4 cut(s) 174, 357, 372, 542
SinI GGWCC 3 cut(s) 220, 487, 772
SmiMI CAYNNNNRTG 3 cut(s) 116, 137, 806
SmlI CTYRAG 2 cut(s) 418, 733
SmoI CTYRAG 2 cut(s) 418, 733
SpeI ACTAGT 1 cut(s) 113
Sse9I AATT 6 cut(s) 204, 264, 441, 548, 686, 973
SsiI CCGC 2 cut(s) 105, 423
SspI AATATT 1 cut(s) 348
SspMI CTAG 2 cut(s) 114, 1085
SstI GAGCTC 1 cut(s) 995
StyD4I CCNGG 2 cut(s) 866, 950
StyI CCWWGG 3 cut(s) 45, 483, 1071
TaaI ACNGT 2 cut(s) 537, 1031
TaiI ACGT 1 cut(s) 453
TaqI TCGA 1 cut(s) 78
TaqII GACCGA 1 cut(s) 305
TasI AATT 6 cut(s) 204, 264, 441, 548, 686, 973
TatI WGTACW 2 cut(s) 353, 462
TfiI GAWTC 3 cut(s) 86, 197, 501
Tru1I TTAA 4 cut(s) 677, 903, 926, 1026
Tru9I TTAA 4 cut(s) 677, 903, 926, 1026
TscAI CASTG 4 cut(s) 465, 639, 788, 1026
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 3 cut(s) 191, 544, 719
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 3 cut(s) 174, 273, 305
TspGWI ACGGA 2 cut(s) 594, 695
TspRI CASTG 4 cut(s) 465, 639, 788, 1026
VpaK11BI GGWCC 3 cut(s) 220, 487, 772
XbaI TCTAGA 1 cut(s) 1084
XceI RCATGY 1 cut(s) 823
XspI CTAG 2 cut(s) 114, 1085
ZrmI AGTACT 1 cut(s) 355
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.