Rmu_sc0003556.1_g000003
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003556.1
OG0000401
Physical Location & Seq
Forward (+)
7676 .. 9861
2186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003556.1_g000003.1.cds

Sequence Viewer

Length: 729 bp
atggacatagaagccatgggagaagggctactagctctatcagggtcagagtccaatatcaatcgaacttcaattcacgcttcccgcatcataactcgaagtcggtcctcttcctcagccacccctgttttagttctgagcacattggtcgctctctgtggttcctttggctatgcctgtgctgcaggatattcatcatcagctgaatcaggaattgtggaagacttgggccttactgttgcagcatactcagttttcggttcaataatgacgattgggggaatgattggtgcattagtaaatgggaagataacggatctcattggtcgtagaggttcagtgaagagagttaaatgctttatgcagaatgcttggtggctggatttaggacggttgtcagtgggatttggcgtcggtataatttgctacgcggtacctgtatacatagcagaaataacacctactgatcttagaggaaggtttacttcagctactcagttgatgcttagttttggcttcgcactaacatatttccttggaaatgtcataacctggcggaccttggctgtaatcggtgctattccatctcttgtacacattataggtttattcttcattccagagtctccaaggtggctggccaaagttggcaggcgaaaagccttcgaagcgactcttcagcatcttagaggaaagaacactgacatatctcaagaagctagcagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

242

Amino Acids

25.81

Weight (kDa)

9.35

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 433
AccB1I GGYRCC 1 cut(s) 433
AccI GTMKAC 1 cut(s) 441
AccII CGCG 1 cut(s) 431
AciI CCGC 3 cut(s) 85, 431, 556
AclWI GGATC 1 cut(s) 324
AcoI YGGCCR 1 cut(s) 639
AcuI CTGAAG 2 cut(s) 471, 662
AcyI GRCGYC 1 cut(s) 411
AfaI GTAC 2 cut(s) 435, 594
AgsI TTSAA 2 cut(s) 72, 264
AjnI CCWGG 1 cut(s) 551
AluBI AGCT 5 cut(s) 35, 203, 491, 719, 726
AluI AGCT 5 cut(s) 35, 203, 491, 719, 726
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 630
AlwI GGATC 1 cut(s) 324
AoxI GGCC 2 cut(s) 229, 639
ApeKI GCWGC 3 cut(s) 182, 242, 723
Asp718I GGTACC 1 cut(s) 433
AspS9I GGNCC 3 cut(s) 105, 229, 558
AsuII TTCGAA 1 cut(s) 666
AsuNHI GCTAGC 1 cut(s) 719
AvaII GGWCC 2 cut(s) 105, 558
BalI TGGCCA 1 cut(s) 641
BanI GGYRCC 1 cut(s) 433
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 143
BbvCI CCTCAGC 1 cut(s) 115
BbvI GCAGC 2 cut(s) 169, 254
BccI CCATC 1 cut(s) 592
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BciT130I CCWGG 1 cut(s) 553
BcoDI GTCTC 1 cut(s) 630
BfaI CTAG 2 cut(s) 32, 720
BfmI CTRYAG 1 cut(s) 183
BisI GCNGC 3 cut(s) 183, 243, 724
BlsI GCNGC 3 cut(s) 184, 244, 725
Bme1390I CCNGG 1 cut(s) 553
Bme18I GGWCC 2 cut(s) 105, 558
BmgT120I GGNCC 3 cut(s) 105, 229, 558
BmiI GGNNCC 2 cut(s) 163, 435
BmrFI CCNGG 1 cut(s) 553
BmsI GCATC 3 cut(s) 96, 492, 691
BmtI GCTAGC 1 cut(s) 723
BoxI GACNNNNGTC 1 cut(s) 394
BpiI GAAGAC 1 cut(s) 228
Bpu10I CCTNAGC 1 cut(s) 115
Bpu14I TTCGAA 1 cut(s) 666
BpuEI CTTGAG 1 cut(s) 696
BsaBI GATNNNNATC 1 cut(s) 193
BsaHI GRCGYC 1 cut(s) 411
BsaJI CCNNGG 4 cut(s) 15, 535, 561, 629
Bse8I GATNNNNATC 1 cut(s) 193
BseBI CCWGG 1 cut(s) 553
BseDI CCNNGG 4 cut(s) 15, 535, 561, 629
BseJI GATNNNNATC 1 cut(s) 193
BseMII CTCAG 4 cut(s) 128, 129, 264, 509
BseXI GCAGC 2 cut(s) 169, 254
Bsh1236I CGCG 1 cut(s) 431
BshFI GGCC 2 cut(s) 231, 641
BshNI GGYRCC 1 cut(s) 433
BsiHKAI GWGCWC 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 630
BsmI GAATGC 1 cut(s) 373
BsnI GGCC 2 cut(s) 231, 641
Bsp119I TTCGAA 1 cut(s) 666
Bsp1286I GDGCHC 1 cut(s) 143
Bsp1407I TGTACA 1 cut(s) 592
Bsp143I GATC 2 cut(s) 316, 466
Bsp19I CCATGG 1 cut(s) 15
BspACI CCGC 3 cut(s) 85, 431, 556
BspANI GGCC 2 cut(s) 231, 641
BspCNI CTCAG 4 cut(s) 128, 129, 263, 508
BspFNI CGCG 1 cut(s) 431
BspLI GGNNCC 2 cut(s) 163, 435
BspMAI CTGCAG 1 cut(s) 187
BspOI GCTAGC 1 cut(s) 723
BspPI GGATC 1 cut(s) 324
BspT104I TTCGAA 1 cut(s) 666
BspT107I GGYRCC 1 cut(s) 433
BsrGI TGTACA 1 cut(s) 592
BssECI CCNNGG 4 cut(s) 15, 535, 561, 629
BssMI GATC 2 cut(s) 316, 466
BssNAI GTATAC 1 cut(s) 442
BssNI GRCGYC 1 cut(s) 411
BssT1I CCWWGG 4 cut(s) 15, 535, 561, 629
Bst1107I GTATAC 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 553
Bst4CI ACNGT 2 cut(s) 238, 393
Bst6I CTCTTC 3 cut(s) 115, 338, 681
BstACI GRCGYC 1 cut(s) 411
BstAUI TGTACA 1 cut(s) 592
BstBI TTCGAA 1 cut(s) 666
BstC8I GCNNGC 3 cut(s) 639, 653, 721
BstDEI CTNAG 7 cut(s) 115, 137, 250, 470, 495, 506, 686
BstDSI CCRYGG 1 cut(s) 15
BstFNI CGCG 1 cut(s) 431
BstKTI GATC 2 cut(s) 319, 469
BstMAI GTCTC 1 cut(s) 630
BstMBI GATC 2 cut(s) 316, 466
BstMWI GCNNNNNNNGC 2 cut(s) 182, 668
BstNI CCWGG 1 cut(s) 553
BstPAI GACNNNNGTC 1 cut(s) 394
BstSCI CCNGG 1 cut(s) 551
BstSFI CTRYAG 1 cut(s) 183
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 2 cut(s) 169, 254
BstV2I GAAGAC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BstZ17I GTATAC 1 cut(s) 442
BsuRI GGCC 2 cut(s) 231, 641
BtgI CCRYGG 1 cut(s) 15
BtsIMutI CAGTG 3 cut(s) 345, 405, 699
Cac8I GCNNGC 3 cut(s) 639, 653, 721
Cfr13I GGNCC 3 cut(s) 105, 229, 558
CseI GACGC 1 cut(s) 400
Csp6I GTAC 2 cut(s) 434, 593
CviAII CATG 1 cut(s) 16
CviQI GTAC 2 cut(s) 434, 593
DdeI CTNAG 7 cut(s) 115, 137, 250, 470, 495, 506, 686
DpnI GATC 2 cut(s) 318, 468
DpnII GATC 2 cut(s) 316, 466
EaeI YGGCCR 1 cut(s) 639
Eam1104I CTCTTC 3 cut(s) 115, 338, 681
EarI CTCTTC 3 cut(s) 115, 338, 681
EciI GGCGGA 1 cut(s) 571
Eco130I CCWWGG 4 cut(s) 15, 535, 561, 629
Eco47I GGWCC 2 cut(s) 105, 558
Eco57I CTGAAG 2 cut(s) 471, 662
EcoRII CCWGG 1 cut(s) 551
EcoT14I CCWWGG 4 cut(s) 15, 535, 561, 629
ErhI CCWWGG 4 cut(s) 15, 535, 561, 629
FaeI CATG 1 cut(s) 19
FalI AAGNNNNNCTT 4 cut(s) 469, 501, 660, 692
FatI CATG 1 cut(s) 15
FauI CCCGC 1 cut(s) 92
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 3 cut(s) 183, 243, 724
Fsp4HI GCNGC 3 cut(s) 183, 243, 724
FspBI CTAG 2 cut(s) 32, 720
GluI GCNGC 3 cut(s) 183, 243, 724
HaeIII GGCC 2 cut(s) 231, 641
HgaI GACGC 1 cut(s) 400
Hin1I GRCGYC 1 cut(s) 411
Hin1II CATG 1 cut(s) 19
HinfI GANTC 4 cut(s) 50, 206, 623, 673
Hpy166II GTNNAC 3 cut(s) 442, 483, 595
Hpy188I TCNGA 2 cut(s) 49, 138
Hpy188III TCNNGA 3 cut(s) 210, 620, 713
Hpy8I GTNNAC 3 cut(s) 442, 483, 595
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 3 cut(s) 17, 471, 673
HpyCH4III ACNGT 2 cut(s) 238, 393
HpyCH4V TGCA 4 cut(s) 185, 242, 293, 364
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 668
HpyF3I CTNAG 7 cut(s) 115, 137, 250, 470, 495, 506, 686
Hsp92I GRCGYC 1 cut(s) 411
Hsp92II CATG 1 cut(s) 19
KpnI GGTACC 1 cut(s) 437
Kzo9I GATC 2 cut(s) 316, 466
Lsp1109I GCAGC 2 cut(s) 169, 254
LweI GCATC 3 cut(s) 96, 492, 691
MaeI CTAG 2 cut(s) 32, 720
MalI GATC 2 cut(s) 318, 468
MboI GATC 2 cut(s) 316, 466
MboII GAAGA 6 cut(s) 102, 233, 319, 355, 604, 668
MflI RGATCY 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 143
MlsI TGGCCA 1 cut(s) 641
MluCI AATT 3 cut(s) 72, 213, 420
MluNI TGGCCA 1 cut(s) 641
MlyI GAGTC 3 cut(s) 59, 632, 667
MnlI CCTC 5 cut(s) 118, 124, 326, 467, 683
Mox20I TGGCCA 1 cut(s) 641
MscI TGGCCA 1 cut(s) 641
MseI TTAA 1 cut(s) 351
Msp20I TGGCCA 1 cut(s) 641
MspA1I CMGCKG 2 cut(s) 203, 726
MspR9I CCNGG 1 cut(s) 553
Mva1269I GAATGC 1 cut(s) 373
MvaI CCWGG 1 cut(s) 553
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 2 cut(s) 182, 668
NcoI CCATGG 1 cut(s) 15
NdeII GATC 2 cut(s) 316, 466
NheI GCTAGC 1 cut(s) 719
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 2 cut(s) 163, 435
NspV TTCGAA 1 cut(s) 666
PctI GAATGC 1 cut(s) 373
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 3 cut(s) 184, 244, 725
PleI GAGTC 3 cut(s) 58, 631, 667
PpsI GAGTC 3 cut(s) 58, 631, 667
PshAI GACNNNNGTC 1 cut(s) 394
Psp6I CCWGG 1 cut(s) 551
PspGI CCWGG 1 cut(s) 551
PspN4I GGNNCC 2 cut(s) 163, 435
PspPI GGNCC 3 cut(s) 105, 229, 558
PstI CTGCAG 1 cut(s) 187
PsuI RGATCY 1 cut(s) 316
PvuII CAGCTG 2 cut(s) 203, 726
RsaI GTAC 2 cut(s) 435, 594
RsaNI GTAC 2 cut(s) 434, 593
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 3 cut(s) 183, 243, 724
Sau3AI GATC 2 cut(s) 316, 466
Sau96I GGNCC 3 cut(s) 105, 229, 558
SchI GAGTC 3 cut(s) 59, 632, 667
ScrFI CCNGG 1 cut(s) 553
SduI GDGCHC 1 cut(s) 143
SfaNI GCATC 3 cut(s) 96, 492, 691
SfcI CTRYAG 1 cut(s) 183
SfuI TTCGAA 1 cut(s) 666
SinI GGWCC 2 cut(s) 105, 558
SmlI CTYRAG 1 cut(s) 711
SmoI CTYRAG 1 cut(s) 711
Sse9I AATT 3 cut(s) 72, 213, 420
SsiI CCGC 3 cut(s) 85, 431, 556
SspMI CTAG 2 cut(s) 32, 720
StyD4I CCNGG 1 cut(s) 551
StyI CCWWGG 4 cut(s) 15, 535, 561, 629
TaaI ACNGT 2 cut(s) 238, 393
TaqI TCGA 3 cut(s) 64, 97, 666
TaqII GACCGA 1 cut(s) 93
TasI AATT 3 cut(s) 72, 213, 420
TatI WGTACW 1 cut(s) 592
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 3 cut(s) 345, 405, 706
TseI GCWGC 3 cut(s) 182, 242, 723
TspDTI ATGAA 2 cut(s) 183, 604
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 3 cut(s) 345, 405, 706
VpaK11BI GGWCC 2 cut(s) 105, 558
XmiI GTMKAC 1 cut(s) 441
XspI CTAG 2 cut(s) 32, 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.