Rroxscaffold_6G00430550
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000401
Physical Location & Seq
Forward (+)
50668788 .. 50682527
13740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00430550.1

Sequence Viewer

Length: 879 bp
ATGGAAGAAGGGCTACTAACTCTATCAGGGTCAAAGTCCAATAATAATGAAGCTTCAGGTGGATGCAGTGACGTGATAAACCCAAGTGGGTCCTCCTCGTCGGCCACCCTTGTTGTGGTTCTGAGCACATTGGTAGCTCTATGTGGTTCCTTCGGCTATGGCTGTGCTGTAGGATATTCATCCTCTGCTGAATCAGGAATTCTGGAAGACTTGGACCTTACTGTTGCAGCATACTCAGTTTTTGGTTCAATAATGACGATCGGAGGAATGATTGGTGCACTAGTAAATGGGAAGATAACCGATCTCATTGGTCGTAGAGGAGCAATGTGGCTGTCTGAAACGTTCAGTGCTGCAGGATGGCTCGCCATAGCATTTGCACAGAATGCTTGGTGGCTTGATTTAGGACGGTTGTCAGTGGGATTCGGCGTTGGTCTAATTTGCTACGTGGTACCTGTATACATAGCAGAAATAACACCCAAGGATCTTAGAGGAAGATTTACTTCAGCTACTCAGTTGATGTGTAGTTGCGGCTTAGCACTAGCCTTTTTCCTTGGAAATGTCATAACCTGGCGGACCTTGGCGGTTATCGGTGCCATTCCATCTCTTGTACACATTATAGGCCTATTTTTTATTCCCGAGTCTCCAAGGTGGCTGGCCAAAATTGGTAGGCACAAGGAATTTGAAGCGGCTCTTCAGCGACTGAGAGGAAAGCATGCCGACATATCTCAAGAAGCAGCTGAAATAATGCATTATACAGAAATGTTTCAGCAGCAGTCAGAAAAAGTTCTGGACTTGTTCCAAAAGAGATATGCTTACTCACTCATTGTAAGCTGCCTCAAGGAATATAAATATACTAGTGTTTCAATTCTCTTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

292

Amino Acids

31.45

Weight (kDa)

6.1

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 47 - 226 3.1e-21 Major Facilitator Superfamily
Sugar_tr PF00083 65 - 276 1.2e-41 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 448
AccB1I GGYRCC 2 cut(s) 448, 590
AccI GTMKAC 1 cut(s) 456
AciI CCGC 4 cut(s) 528, 571, 581, 686
AclI AACGTT 1 cut(s) 341
AclWI GGATC 1 cut(s) 489
AcoI YGGCCR 2 cut(s) 102, 654
AcsI RAATTY 2 cut(s) 198, 677
AcuI CTGAAG 3 cut(s) 39, 486, 677
AfaI GTAC 2 cut(s) 450, 609
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 3 cut(s) 249, 683, 864
AhlI ACTAGT 2 cut(s) 280, 854
AjiI CACGTC 1 cut(s) 73
AjnI CCWGG 1 cut(s) 566
AluBI AGCT 5 cut(s) 53, 137, 506, 737, 831
AluI AGCT 5 cut(s) 53, 137, 506, 737, 831
Alw21I GWGCWC 2 cut(s) 128, 280
Alw26I GTCTC 1 cut(s) 645
Alw44I GTGCAC 1 cut(s) 276
AlwI GGATC 1 cut(s) 489
AlwNI CAGNNNCTG 1 cut(s) 700
Ama87I CYCGRG 1 cut(s) 635
AoxI GGCC 3 cut(s) 102, 619, 654
ApaLI GTGCAC 1 cut(s) 276
ApeKI GCWGC 5 cut(s) 227, 350, 734, 769, 831
ApoI RAATTY 2 cut(s) 198, 677
Asp700I GAANNNNTTC 2 cut(s) 762, 783
Asp718I GGTACC 1 cut(s) 448
AspS9I GGNCC 3 cut(s) 90, 214, 573
AvaI CYCGRG 1 cut(s) 635
AvaII GGWCC 3 cut(s) 90, 214, 573
BaeGI GKGCMC 1 cut(s) 280
BalI TGGCCA 1 cut(s) 656
BanI GGYRCC 2 cut(s) 448, 590
BarI GAAGNNNNNNTAC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 213
Bbv12I GWGCWC 2 cut(s) 128, 280
BbvI GCAGC 5 cut(s) 239, 337, 746, 781, 818
BccI CCATC 2 cut(s) 351, 607
BciT130I CCWGG 1 cut(s) 568
BcoDI GTCTC 1 cut(s) 645
BcuI ACTAGT 2 cut(s) 280, 854
BfaI CTAG 3 cut(s) 281, 539, 855
BfmI CTRYAG 2 cut(s) 168, 351
BisI GCNGC 7 cut(s) 228, 351, 529, 687, 735, 770, 832
BlpI GCTNAGC 1 cut(s) 532
BlsI GCNGC 7 cut(s) 229, 352, 530, 688, 736, 771, 833
Bme1390I CCNGG 1 cut(s) 568
Bme18I GGWCC 3 cut(s) 90, 214, 573
BmeT110I CYCGRG 1 cut(s) 635
BmgBI CACGTC 1 cut(s) 73
BmgT120I GGNCC 3 cut(s) 90, 214, 573
BmiI GGNNCC 4 cut(s) 91, 148, 450, 592
BmrFI CCNGG 1 cut(s) 568
BmsI GCATC 1 cut(s) 53
BoxI GACNNNNGTC 1 cut(s) 409
BpiI GAAGAC 1 cut(s) 213
Bpu1102I GCTNAGC 1 cut(s) 532
BpuEI CTTGAG 2 cut(s) 711, 821
BsaAI YACGTR 1 cut(s) 445
BsaBI GATNNNNATC 1 cut(s) 178
BsaJI CCNNGG 4 cut(s) 477, 550, 576, 644
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 330
Bse8I GATNNNNATC 1 cut(s) 178
BseBI CCWGG 1 cut(s) 568
BseDI CCNNGG 4 cut(s) 477, 550, 576, 644
BseGI GGATG 3 cut(s) 68, 179, 362
BseJI GATNNNNATC 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 4 cut(s) 113, 249, 524, 692
BseRI GAGGAG 2 cut(s) 85, 333
BseSI GKGCMC 1 cut(s) 280
BseXI GCAGC 5 cut(s) 239, 337, 746, 781, 818
Bsh1285I CGRYCG 1 cut(s) 261
BshFI GGCC 3 cut(s) 104, 621, 656
BshNI GGYRCC 2 cut(s) 448, 590
BsiEI CGRYCG 1 cut(s) 261
BsiHKAI GWGCWC 2 cut(s) 128, 280
BsiHKCI CYCGRG 1 cut(s) 635
BslI CCNNNNNNNGG 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 645
BsmI GAATGC 1 cut(s) 388
BsnI GGCC 3 cut(s) 104, 621, 656
BsoBI CYCGRG 1 cut(s) 635
Bsp1286I GDGCHC 2 cut(s) 128, 280
Bsp1407I TGTACA 1 cut(s) 607
Bsp143I GATC 3 cut(s) 258, 301, 481
Bsp1720I GCTNAGC 1 cut(s) 532
BspACI CCGC 4 cut(s) 528, 571, 581, 686
BspANI GGCC 3 cut(s) 104, 621, 656
BspCNI CTCAG 4 cut(s) 114, 248, 523, 693
BspHI TCATGA 1 cut(s) 875
BspLI GGNNCC 4 cut(s) 91, 148, 450, 592
BspMAI CTGCAG 1 cut(s) 355
BspPI GGATC 1 cut(s) 489
BspQI GCTCTTC 1 cut(s) 696
BspT107I GGYRCC 2 cut(s) 448, 590
BsrDI GCAATG 1 cut(s) 330
BsrGI TGTACA 1 cut(s) 607
BssECI CCNNGG 4 cut(s) 477, 550, 576, 644
BssMI GATC 3 cut(s) 258, 301, 481
BssNAI GTATAC 1 cut(s) 457
BssT1I CCWWGG 4 cut(s) 477, 550, 576, 644
Bst1107I GTATAC 1 cut(s) 457
Bst2UI CCWGG 1 cut(s) 568
Bst4CI ACNGT 2 cut(s) 223, 408
Bst6I CTCTTC 1 cut(s) 696
BstAPI GCANNNNNTGC 1 cut(s) 383
BstAUI TGTACA 1 cut(s) 607
BstBAI YACGTR 1 cut(s) 445
BstC8I GCNNGC 3 cut(s) 363, 654, 714
BstDEI CTNAG 6 cut(s) 122, 235, 485, 510, 532, 701
BstF5I GGATG 3 cut(s) 68, 179, 362
BstKTI GATC 3 cut(s) 261, 304, 484
BstMAI GTCTC 1 cut(s) 645
BstMBI GATC 3 cut(s) 258, 301, 481
BstMCI CGRYCG 1 cut(s) 261
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstNI CCWGG 1 cut(s) 568
BstNSI RCATGY 1 cut(s) 716
BstPAI GACNNNNGTC 1 cut(s) 409
BstSCI CCNGG 1 cut(s) 566
BstSFI CTRYAG 2 cut(s) 168, 351
BstSLI GKGCMC 1 cut(s) 280
BstV1I GCAGC 5 cut(s) 239, 337, 746, 781, 818
BstV2I GAAGAC 1 cut(s) 213
BstX2I RGATCY 1 cut(s) 481
BstYI RGATCY 1 cut(s) 481
BstZ17I GTATAC 1 cut(s) 457
BsuRI GGCC 3 cut(s) 104, 621, 656
BtrI CACGTC 1 cut(s) 73
BtsCI GGATG 3 cut(s) 68, 179, 362
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 3 cut(s) 73, 352, 420
Cac8I GCNNGC 3 cut(s) 363, 654, 714
CaiI CAGNNNCTG 1 cut(s) 700
CciI TCATGA 1 cut(s) 875
Cfr13I GGNCC 3 cut(s) 90, 214, 573
Csp6I GTAC 2 cut(s) 449, 608
CspCI CAANNNNNGTGG 2 cut(s) 94, 129
CviAII CATG 2 cut(s) 713, 876
CviQI GTAC 2 cut(s) 449, 608
DdeI CTNAG 6 cut(s) 122, 235, 485, 510, 532, 701
DpnI GATC 3 cut(s) 260, 303, 483
DpnII GATC 3 cut(s) 258, 301, 481
EaeI YGGCCR 2 cut(s) 102, 654
Eam1104I CTCTTC 1 cut(s) 696
EarI CTCTTC 1 cut(s) 696
EciI GGCGGA 1 cut(s) 586
Eco130I CCWWGG 4 cut(s) 477, 550, 576, 644
Eco147I AGGCCT 1 cut(s) 621
Eco47I GGWCC 3 cut(s) 90, 214, 573
Eco57I CTGAAG 3 cut(s) 39, 486, 677
Eco88I CYCGRG 1 cut(s) 635
EcoO109I RGGNCCY 1 cut(s) 90
EcoRI GAATTC 1 cut(s) 198
EcoRII CCWGG 1 cut(s) 566
EcoT14I CCWWGG 4 cut(s) 477, 550, 576, 644
EcoT22I ATGCAT 1 cut(s) 750
ErhI CCWWGG 4 cut(s) 477, 550, 576, 644
FaeI CATG 2 cut(s) 716, 879
FalI AAGNNNNNCTT 4 cut(s) 484, 516, 675, 707
FatI CATG 2 cut(s) 712, 875
FblI GTMKAC 1 cut(s) 456
Fnu4HI GCNGC 7 cut(s) 228, 351, 529, 687, 735, 770, 832
FokI GGATG 3 cut(s) 75, 166, 369
Fsp4HI GCNGC 7 cut(s) 228, 351, 529, 687, 735, 770, 832
FspBI CTAG 3 cut(s) 281, 539, 855
GluI GCNGC 7 cut(s) 228, 351, 529, 687, 735, 770, 832
HaeIII GGCC 3 cut(s) 104, 621, 656
Hin1II CATG 2 cut(s) 716, 879
HindIII AAGCTT 1 cut(s) 51
HinfI GANTC 3 cut(s) 191, 420, 638
Hpy166II GTNNAC 3 cut(s) 278, 457, 610
Hpy188I TCNGA 4 cut(s) 123, 263, 337, 778
Hpy188III TCNNGA 6 cut(s) 195, 203, 635, 728, 788, 876
Hpy8I GTNNAC 3 cut(s) 278, 457, 610
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 2 cut(s) 223, 408
HpyCH4IV ACGT 3 cut(s) 72, 341, 444
HpyCH4V TGCA 6 cut(s) 66, 227, 278, 353, 377, 748
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpyF3I CTNAG 6 cut(s) 122, 235, 485, 510, 532, 701
HpySE526I ACGT 3 cut(s) 72, 341, 444
Hsp92II CATG 2 cut(s) 716, 879
KpnI GGTACC 1 cut(s) 452
Kzo9I GATC 3 cut(s) 258, 301, 481
LguI GCTCTTC 1 cut(s) 696
LmnI GCTCC 1 cut(s) 320
Lsp1109I GCAGC 5 cut(s) 239, 337, 746, 781, 818
LweI GCATC 1 cut(s) 53
MaeI CTAG 3 cut(s) 281, 539, 855
MaeII ACGT 3 cut(s) 72, 341, 444
MaeIII GTNAC 1 cut(s) 68
MalI GATC 3 cut(s) 260, 303, 483
MboI GATC 3 cut(s) 258, 301, 481
MboII GAAGA 5 cut(s) 17, 218, 304, 504, 683
MflI RGATCY 1 cut(s) 481
MhlI GDGCHC 2 cut(s) 128, 280
MlsI TGGCCA 1 cut(s) 656
MluCI AATT 5 cut(s) 198, 435, 660, 677, 864
MluNI TGGCCA 1 cut(s) 656
MlyI GAGTC 1 cut(s) 647
MnlI CCTC 8 cut(s) 103, 106, 193, 257, 311, 482, 698, 845
Mox20I TGGCCA 1 cut(s) 656
Mph1103I ATGCAT 1 cut(s) 750
MroXI GAANNNNTTC 2 cut(s) 762, 783
MscI TGGCCA 1 cut(s) 656
Msp20I TGGCCA 1 cut(s) 656
MspA1I CMGCKG 1 cut(s) 737
MspR9I CCNGG 1 cut(s) 568
Mva1269I GAATGC 1 cut(s) 388
MvaI CCWGG 1 cut(s) 568
MwoI GCNNNNNNNGC 1 cut(s) 383
NdeII GATC 3 cut(s) 258, 301, 481
NlaIII CATG 2 cut(s) 716, 879
NlaIV GGNNCC 4 cut(s) 91, 148, 450, 592
NmuCI GTSAC 1 cut(s) 68
NsiI ATGCAT 1 cut(s) 750
NspI RCATGY 1 cut(s) 716
PaeI GCATGC 1 cut(s) 716
PagI TCATGA 1 cut(s) 875
PceI AGGCCT 1 cut(s) 621
PciSI GCTCTTC 1 cut(s) 696
PctI GAATGC 1 cut(s) 388
PdmI GAANNNNTTC 2 cut(s) 762, 783
PfeI GAWTC 2 cut(s) 191, 420
PkrI GCNGC 7 cut(s) 229, 352, 530, 688, 736, 771, 833
Ple19I CGATCG 1 cut(s) 261
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
Ppu21I YACGTR 1 cut(s) 445
PpuMI RGGWCCY 1 cut(s) 90
PshAI GACNNNNGTC 1 cut(s) 409
Psp1406I AACGTT 1 cut(s) 341
Psp5II RGGWCCY 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 566
PspGI CCWGG 1 cut(s) 566
PspN4I GGNNCC 4 cut(s) 91, 148, 450, 592
PspPI GGNCC 3 cut(s) 90, 214, 573
PspPPI RGGWCCY 1 cut(s) 90
PstI CTGCAG 1 cut(s) 355
PstNI CAGNNNCTG 1 cut(s) 700
PsuI RGATCY 1 cut(s) 481
PvuI CGATCG 1 cut(s) 261
PvuII CAGCTG 1 cut(s) 737
RsaI GTAC 2 cut(s) 450, 609
RsaNI GTAC 2 cut(s) 449, 608
SapI GCTCTTC 1 cut(s) 696
SatI GCNGC 7 cut(s) 228, 351, 529, 687, 735, 770, 832
Sau3AI GATC 3 cut(s) 258, 301, 481
Sau96I GGNCC 3 cut(s) 90, 214, 573
SchI GAGTC 1 cut(s) 647
ScrFI CCNGG 1 cut(s) 568
SduI GDGCHC 2 cut(s) 128, 280
SfaNI GCATC 1 cut(s) 53
SfcI CTRYAG 2 cut(s) 168, 351
SinI GGWCC 3 cut(s) 90, 214, 573
SmlI CTYRAG 2 cut(s) 726, 836
SmoI CTYRAG 2 cut(s) 726, 836
SpeI ACTAGT 2 cut(s) 280, 854
SphI GCATGC 1 cut(s) 716
Sse9I AATT 5 cut(s) 198, 435, 660, 677, 864
SseBI AGGCCT 1 cut(s) 621
SsiI CCGC 4 cut(s) 528, 571, 581, 686
SspMI CTAG 3 cut(s) 281, 539, 855
StuI AGGCCT 1 cut(s) 621
StyD4I CCNGG 1 cut(s) 566
StyI CCWWGG 4 cut(s) 477, 550, 576, 644
TaaI ACNGT 2 cut(s) 223, 408
TaiI ACGT 3 cut(s) 75, 344, 447
TasI AATT 5 cut(s) 198, 435, 660, 677, 864
TatI WGTACW 1 cut(s) 607
TauI GCSGC 2 cut(s) 531, 689
TfiI GAWTC 2 cut(s) 191, 420
TscAI CASTG 3 cut(s) 73, 352, 420
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 5 cut(s) 227, 350, 734, 769, 831
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 3 cut(s) 63, 168, 864
TspRI CASTG 3 cut(s) 73, 352, 420
VneI GTGCAC 1 cut(s) 276
VpaK11BI GGWCC 3 cut(s) 90, 214, 573
XapI RAATTY 2 cut(s) 198, 677
XceI RCATGY 1 cut(s) 716
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 456
XmnI GAANNNNTTC 2 cut(s) 762, 783
XspI CTAG 3 cut(s) 281, 539, 855
Zsp2I ATGCAT 1 cut(s) 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.