AT5G27350
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
9648508 .. 9654426
5919 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G27350.1

Sequence Viewer

Length: 1425 bp
ATGGTGATGGAGGAAGGAAGAAGCATAGAAGAAGGGCTTTTGCAGCTCAAGAACAAAAACGACGATTCAGAGTGTCGTATTACTGCTTGTGTTATCCTTAGCACTTTTGTCGCCGTTTGTGGCTCCTTCTCTTTTGGTGTTGCTACTGGTTACACTTCAGGTGCTGAGACAGGAGTTATGAAGGACTTGGATCTTTCTATCGCGCAATTTTCAGCTTTTGGCTCATTCGCCACTTTAGGAGCTGCAATTGGTGCACTGTTCTGCGGTAATCTGGCAATGGTCATTGGCAGAAGAGGGACAATGTGGGTCTCCGATTTCCTATGCATCACTGGTTGGCTCTCCATCGCTTTTGCTAAGGAAGTAGTGTTGCTGAACTTCGGAAGAATCATTTCAGGGATAGGTTTCGGCTTGACGAGCTATGTGGTACCTGTCTACATAGCAGAAATTACGCCAAAACATGTTCGTGGTACATTTACGTTTTCAAACCAGCTTCTTCAAAACGCTGGACTCGCCATGATTTATTTCTGTGGGAATTTCATCACTTGGAGGACGTTGGCTTTATTAGGTGCTTTACCATGCTTCATTCAAGTAATCGGTTTATTCTTCGTGCCAGAGTCTCCAAGATGGCTGGCCAAAGTTGGCTCCGATAAAGAACTAGAAAATTCACTGTTTCGGCTTAGAGGAAGAGATGCTGATATTTCACGTGAAGCCTCAGAAATTCAAGTAATGACCAAAATGGTGGAAAATGATTCAAAGTCGAGTTTTTCAGATTTGTTCCAGAGAAAGTATAGATACACCCTCGTGGTAGGAATCGGGCTAATGTTGATACAACAATTCTCAGGAAGTGCTGCTGTAATCTCTTATGCAAGTACCATTTTTAGAAAAGCTGGTTTTTCGGTGGCCATTGGAACGACGATGCTAGGTATCTTCGTGATTCCAAAAGCCATGATTGGCCTCATTCTTGTCGATAAATGGGGCAGACGTCCTCTCCTGATGACTTCAGCGTTTGGGATGAGCATGACTTGCATGCTACTTGGGGTCGCCTTCACATTACAGAAAATGCAATTGCTTTCGGAACTAACTCCAATATTATCGTTTATATGCGTAATGATGTATATTGCAACTTATGCAATAGGCTTGGGAGGTCTACCTTGGGTAATTATGTCGGAGATATTTCCAATAAATATAAAAGTAACTGCAGGAAGTATAGTTACGTTAGTCTCATTTTCAAGTAGTTCAATCGTCACTTACGCTTTCAACTTTCTGTTCGAATGGAGCACTCAAGGAACGTTTTTCATATTCGCGGGTATCGGTGGAGCAGCGTTGCTTTTTATATGGTTGCTCGTTCCAGAAACGAAAGGATTATCACTCGAAGAAATACAAGTTTCACTTATTCATCAGCCCGATGAAAGAAATCAAACTTAA

Protein Analysis

474

Amino Acids

51.79

Weight (kDa)

7.47

Isoelectric Point (pI)

32.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 40 - 414 4.6e-22 Major Facilitator Superfamily
Sugar_tr PF00083 42 - 462 1.1e-84 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 985
Acc65I GGTACC 1 cut(s) 424
AccB1I GGYRCC 1 cut(s) 424
AccI GTMKAC 2 cut(s) 432, 1147
AccII CGCG 2 cut(s) 203, 1304
AciI CCGC 2 cut(s) 264, 1304
AclI AACGTT 1 cut(s) 1289
AclWI GGATC 1 cut(s) 198
AcoI YGGCCR 2 cut(s) 630, 900
AcsI RAATTY 3 cut(s) 532, 661, 717
AcuI CTGAAG 2 cut(s) 141, 984
AcvI CACGTG 1 cut(s) 704
AcyI GRCGYC 1 cut(s) 982
AfaI GTAC 3 cut(s) 426, 469, 871
AflIII ACRYGT 1 cut(s) 457
AgsI TTSAA 8 cut(s) 483, 497, 587, 722, 753, 1230, 1239, 1258
AleI CACNNNNGTG 1 cut(s) 800
AluBI AGCT 6 cut(s) 46, 215, 242, 417, 490, 887
AluI AGCT 6 cut(s) 46, 215, 242, 417, 490, 887
Alw21I GWGCWC 2 cut(s) 256, 1280
Alw26I GTCTC 4 cut(s) 161, 313, 621, 1225
Alw44I GTGCAC 1 cut(s) 252
AlwI GGATC 1 cut(s) 198
AlwNI CAGNNNCTG 1 cut(s) 164
AoxI GGCC 3 cut(s) 630, 900, 952
ApaLI GTGCAC 1 cut(s) 252
ApeKI GCWGC 4 cut(s) 43, 242, 848, 1319
ApoI RAATTY 3 cut(s) 532, 661, 717
Asp700I GAANNNNTTC 1 cut(s) 388
Asp718I GGTACC 1 cut(s) 424
AspLEI GCGC 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 1269
BaeGI GKGCMC 1 cut(s) 256
BalI TGGCCA 2 cut(s) 632, 902
BanI GGYRCC 1 cut(s) 424
BarI GAAGNNNNNNTAC 2 cut(s) 1195, 1227
BauI CACGAG 1 cut(s) 800
BbrPI CACGTG 1 cut(s) 704
Bbv12I GWGCWC 2 cut(s) 256, 1280
BbvI GCAGC 4 cut(s) 55, 229, 835, 1331
BccI CCATC 2 cut(s) 350, 618
BceAI ACGGC 1 cut(s) 98
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BcoDI GTCTC 4 cut(s) 161, 313, 621, 1225
BfaI CTAG 2 cut(s) 656, 920
BfmI CTRYAG 1 cut(s) 1197
BisI GCNGC 4 cut(s) 44, 243, 849, 1320
BlsI GCNGC 4 cut(s) 45, 244, 850, 1321
BmiI GGNNCC 3 cut(s) 124, 426, 643
BmsI GCATC 3 cut(s) 333, 679, 906
Bpu10I CCTNAGC 2 cut(s) 98, 354
Bpu14I TTCGAA 1 cut(s) 1269
BpuEI CTTGAG 2 cut(s) 32, 1266
BsaAI YACGTR 1 cut(s) 704
BsaHI GRCGYC 1 cut(s) 982
BsaI GGTCTC 1 cut(s) 313
BsaJI CCNNGG 1 cut(s) 1151
BsaXI ACNNNNNCTCC 2 cut(s) 972, 1002
Bse1I ACTGG 2 cut(s) 151, 334
Bse3DI GCAATG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 1151
BseGI GGATG 1 cut(s) 1017
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 3 cut(s) 156, 726, 852
BseNI ACTGG 2 cut(s) 151, 334
BseSI GKGCMC 1 cut(s) 256
BseXI GCAGC 4 cut(s) 55, 229, 835, 1331
Bsh1236I CGCG 2 cut(s) 203, 1304
BshFI GGCC 3 cut(s) 632, 902, 954
BshNI GGYRCC 1 cut(s) 424
BsiHKAI GWGCWC 2 cut(s) 256, 1280
BslFI GGGAC 1 cut(s) 310
BsmAI GTCTC 4 cut(s) 161, 313, 621, 1225
BsmFI GGGAC 1 cut(s) 310
BsnI GGCC 3 cut(s) 632, 902, 954
Bso31I GGTCTC 1 cut(s) 313
Bsp119I TTCGAA 1 cut(s) 1269
Bsp1286I GDGCHC 2 cut(s) 256, 1280
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 2 cut(s) 264, 1304
BspANI GGCC 3 cut(s) 632, 902, 954
BspCNI CTCAG 3 cut(s) 157, 725, 851
BspFNI CGCG 2 cut(s) 203, 1304
BspLI GGNNCC 3 cut(s) 124, 426, 643
BspMAI CTGCAG 1 cut(s) 1201
BspPI GGATC 1 cut(s) 198
BspT104I TTCGAA 1 cut(s) 1269
BspT107I GGYRCC 1 cut(s) 424
BspTNI GGTCTC 1 cut(s) 313
BsrDI GCAATG 1 cut(s) 282
BsrI ACTGG 2 cut(s) 151, 334
BssECI CCNNGG 1 cut(s) 1151
BssMI GATC 1 cut(s) 190
BssNI GRCGYC 1 cut(s) 982
BssSI CACGAG 1 cut(s) 800
BssT1I CCWWGG 1 cut(s) 1151
Bst2BI CACGAG 1 cut(s) 800
Bst4CI ACNGT 2 cut(s) 258, 669
Bst6I CTCTTC 2 cut(s) 286, 679
BstACI GRCGYC 1 cut(s) 982
BstAPI GCANNNNNTGC 3 cut(s) 251, 1023, 1127
BstBAI YACGTR 1 cut(s) 704
BstBI TTCGAA 1 cut(s) 1269
BstC8I GCNNGC 2 cut(s) 630, 1028
BstDEI CTNAG 6 cut(s) 98, 165, 354, 677, 712, 838
BstF5I GGATG 1 cut(s) 1017
BstFNI CGCG 2 cut(s) 203, 1304
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 4 cut(s) 161, 313, 621, 1225
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 6 cut(s) 43, 251, 414, 509, 1023, 1127
BstNSI RCATGY 2 cut(s) 461, 1030
BstSFI CTRYAG 1 cut(s) 1197
BstSLI GKGCMC 1 cut(s) 256
BstUI CGCG 2 cut(s) 203, 1304
BstV1I GCAGC 4 cut(s) 55, 229, 835, 1331
BstX2I RGATCY 1 cut(s) 190
BstXI CCANNNNNNTGG 1 cut(s) 739
BstYI RGATCY 1 cut(s) 190
BsuRI GGCC 3 cut(s) 632, 902, 954
BtgZI GCGATG 1 cut(s) 328
BtsCI GGATG 1 cut(s) 1017
BtsIMutI CAGTG 3 cut(s) 254, 327, 665
Cac8I GCNNGC 2 cut(s) 630, 1028
CaiI CAGNNNCTG 1 cut(s) 164
CfoI GCGC 1 cut(s) 205
Csp6I GTAC 3 cut(s) 425, 468, 870
CviAII CATG 6 cut(s) 458, 514, 576, 946, 1018, 1027
CviQI GTAC 3 cut(s) 425, 468, 870
DdeI CTNAG 6 cut(s) 98, 165, 354, 677, 712, 838
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
EaeI YGGCCR 2 cut(s) 630, 900
Eam1104I CTCTTC 2 cut(s) 286, 679
EarI CTCTTC 2 cut(s) 286, 679
Eco130I CCWWGG 1 cut(s) 1151
Eco31I GGTCTC 1 cut(s) 313
Eco57I CTGAAG 2 cut(s) 141, 984
Eco72I CACGTG 1 cut(s) 704
EcoT14I CCWWGG 1 cut(s) 1151
EcoT22I ATGCAT 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 1151
FaeI CATG 6 cut(s) 461, 517, 579, 949, 1021, 1030
FalI AAGNNNNNCTT 4 cut(s) 21, 53, 1374, 1406
FaqI GGGAC 1 cut(s) 310
FatI CATG 6 cut(s) 457, 513, 575, 945, 1017, 1026
FauI CCCGC 1 cut(s) 1297
FblI GTMKAC 2 cut(s) 432, 1147
Fnu4HI GCNGC 4 cut(s) 44, 243, 849, 1320
FokI GGATG 1 cut(s) 1024
Fsp4HI GCNGC 4 cut(s) 44, 243, 849, 1320
FspBI CTAG 2 cut(s) 656, 920
GlaI GCGC 1 cut(s) 204
GluI GCNGC 4 cut(s) 44, 243, 849, 1320
HaeIII GGCC 3 cut(s) 632, 902, 954
HhaI GCGC 1 cut(s) 205
Hin1I GRCGYC 1 cut(s) 982
Hin1II CATG 6 cut(s) 461, 517, 579, 949, 1021, 1030
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HinfI GANTC 7 cut(s) 65, 384, 507, 614, 749, 810, 934
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 3 cut(s) 254, 433, 1148
Hpy188I TCNGA 8 cut(s) 70, 313, 380, 646, 715, 769, 1075, 1168
Hpy188III TCNNGA 6 cut(s) 49, 778, 840, 931, 991, 1349
Hpy8I GTNNAC 3 cut(s) 254, 433, 1148
Hpy99I CGWCG 2 cut(s) 65, 916
HpyAV CCTTC 5 cut(s) 8, 26, 136, 175, 1054
HpyCH4III ACNGT 2 cut(s) 258, 669
HpyCH4IV ACGT 6 cut(s) 476, 551, 703, 982, 1214, 1289
HpyF10VI GCNNNNNNNGC 6 cut(s) 43, 251, 414, 509, 1023, 1127
HpyF3I CTNAG 6 cut(s) 98, 165, 354, 677, 712, 838
HpySE526I ACGT 6 cut(s) 476, 551, 703, 982, 1214, 1289
Hsp92I GRCGYC 1 cut(s) 982
Hsp92II CATG 6 cut(s) 461, 517, 579, 949, 1021, 1030
HspAI GCGC 1 cut(s) 203
KpnI GGTACC 1 cut(s) 428
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 5 cut(s) 128, 239, 647, 1275, 1316
Lsp1109I GCAGC 4 cut(s) 55, 229, 835, 1331
LweI GCATC 3 cut(s) 333, 679, 906
MaeI CTAG 2 cut(s) 656, 920
MaeII ACGT 6 cut(s) 476, 551, 703, 982, 1214, 1289
MaeIII GTNAC 4 cut(s) 149, 1192, 1210, 1243
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 9 cut(s) 30, 41, 303, 393, 485, 595, 696, 919, 1385
MfeI CAATTG 2 cut(s) 246, 1064
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 2 cut(s) 256, 1280
MlsI TGGCCA 2 cut(s) 632, 902
MluCI AATT 9 cut(s) 206, 246, 444, 532, 661, 717, 833, 1064, 1158
MluNI TGGCCA 2 cut(s) 632, 902
MlyI GAGTC 2 cut(s) 501, 623
MmeI TCCRAC 1 cut(s) 1146
MnlI CCTC 9 cut(s) 4, 287, 540, 674, 721, 809, 965, 996, 1136
Mox20I TGGCCA 2 cut(s) 632, 902
Mph1103I ATGCAT 1 cut(s) 326
MroXI GAANNNNTTC 1 cut(s) 388
MscI TGGCCA 2 cut(s) 632, 902
MseI TTAA 1 cut(s) 1423
MslI CAYNNNNRTG 2 cut(s) 462, 800
Msp20I TGGCCA 2 cut(s) 632, 902
MunI CAATTG 2 cut(s) 246, 1064
MvnI CGCG 2 cut(s) 203, 1304
MwoI GCNNNNNNNGC 6 cut(s) 43, 251, 414, 509, 1023, 1127
NdeII GATC 1 cut(s) 190
NlaIII CATG 6 cut(s) 461, 517, 579, 949, 1021, 1030
NlaIV GGNNCC 3 cut(s) 124, 426, 643
NmuCI GTSAC 1 cut(s) 1243
NsiI ATGCAT 1 cut(s) 326
NspI RCATGY 2 cut(s) 461, 1030
NspV TTCGAA 1 cut(s) 1269
OliI CACNNNNGTG 1 cut(s) 800
PaeI GCATGC 1 cut(s) 1030
PciI ACATGT 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 388
PfeI GAWTC 5 cut(s) 65, 384, 749, 810, 934
PkrI GCNGC 4 cut(s) 45, 244, 850, 1321
PleI GAGTC 2 cut(s) 501, 622
PmaCI CACGTG 1 cut(s) 704
PmlI CACGTG 1 cut(s) 704
PpsI GAGTC 2 cut(s) 501, 622
Ppu21I YACGTR 1 cut(s) 704
PscI ACATGT 1 cut(s) 457
Psp1406I AACGTT 1 cut(s) 1289
PspCI CACGTG 1 cut(s) 704
PspN4I GGNNCC 3 cut(s) 124, 426, 643
PstI CTGCAG 1 cut(s) 1201
PstNI CAGNNNCTG 1 cut(s) 164
PsuI RGATCY 1 cut(s) 190
RsaI GTAC 3 cut(s) 426, 469, 871
RsaNI GTAC 3 cut(s) 425, 468, 870
RseI CAYNNNNRTG 2 cut(s) 462, 800
SaqAI TTAA 1 cut(s) 1423
SatI GCNGC 4 cut(s) 44, 243, 849, 1320
Sau3AI GATC 1 cut(s) 190
SchI GAGTC 2 cut(s) 501, 623
SduI GDGCHC 2 cut(s) 256, 1280
SfaNI GCATC 3 cut(s) 333, 679, 906
SfcI CTRYAG 1 cut(s) 1197
SfuI TTCGAA 1 cut(s) 1269
SmiMI CAYNNNNRTG 2 cut(s) 462, 800
SmlI CTYRAG 2 cut(s) 47, 1281
SmoI CTYRAG 2 cut(s) 47, 1281
SphI GCATGC 1 cut(s) 1030
Sse9I AATT 9 cut(s) 206, 246, 444, 532, 661, 717, 833, 1064, 1158
SsiI CCGC 2 cut(s) 264, 1304
SspI AATATT 1 cut(s) 1089
SspMI CTAG 2 cut(s) 656, 920
StyI CCWWGG 1 cut(s) 1151
TaaI ACNGT 2 cut(s) 258, 669
TaiI ACGT 6 cut(s) 479, 554, 706, 985, 1217, 1292
TaqI TCGA 4 cut(s) 758, 966, 1269, 1371
TasI AATT 9 cut(s) 206, 246, 444, 532, 661, 717, 833, 1064, 1158
TfiI GAWTC 5 cut(s) 65, 384, 749, 810, 934
Tru1I TTAA 1 cut(s) 1423
Tru9I TTAA 1 cut(s) 1423
TscAI CASTG 3 cut(s) 261, 334, 672
TseFI GTSAC 1 cut(s) 1243
TseI GCWGC 4 cut(s) 43, 242, 848, 1319
Tsp45I GTSAC 1 cut(s) 1243
TspDTI ATGAA 6 cut(s) 194, 526, 571, 1285, 1385, 1422
TspRI CASTG 3 cut(s) 261, 334, 672
VneI GTGCAC 1 cut(s) 252
XapI RAATTY 3 cut(s) 532, 661, 717
XceI RCATGY 2 cut(s) 461, 1030
XmiI GTMKAC 2 cut(s) 432, 1147
XmnI GAANNNNTTC 1 cut(s) 388
XspI CTAG 2 cut(s) 656, 920
ZraI GACGTC 1 cut(s) 983
Zsp2I ATGCAT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.