Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000401

Physical Location & Seq

Genomic Coordinates Forward (+)

2813096 .. 2814303

Gene Structure 1208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g05061.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGAGGAAAGGCTACTGTCAGGGTCAAAGTCCAACATCAATGGAGCTTCAGGTGATTCCAGTGACGTCATCAACCTAAGTGGGTCTTCCTCGGCCACCCCTGTTGTGGTTCTGAGCACATTGGTGGCTCTCTCTGGTGCCTTTGGCTATGGCTGTGCTATAGGATATTCATCAGCTGCTGAATCAGGAATCATGGAAGACTTGGGCCTTACTGTTGCAGCAAATGCTTGGTGGCTTGATTTAGGACGGTTGTCTGTGGGATTCGGTGTTGGTATAATTTGCTACGTGGTAATGAGAAGTTTGCGGTATATTCTGCTTTCTAAGTTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

111

Amino Acids

11.39

Weight (kDa)

4.77

Isoelectric Point (pI)

29.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca	FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica	MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis	pycom12g21050 pycom12g21080
rosa_chinensis	RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata	RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora	Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii	Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa	Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha	Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana	Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	137
AciI	CCGC	1 cut(s)	304
AcoI	YGGCCR	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	33
AcyI	GRCGYC	1 cut(s)	66
AfiI	CCNNNNNNNGG	1 cut(s)	106
AleI	CACNNNNGTG	1 cut(s)	122
AluBI	AGCT	2 cut(s)	47, 176
AluI	AGCT	2 cut(s)	47, 176
Alw21I	GWGCWC	1 cut(s)	119
AlwNI	CAGNNNCTG	1 cut(s)	179
AoxI	GGCC	2 cut(s)	93, 205
ApeKI	GCWGC	2 cut(s)	176, 218
AspS9I	GGNCC	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	137
BbsI	GAAGAC	2 cut(s)	78, 204
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	163, 230
BfmI	CTRYAG	1 cut(s)	159
BisI	GCNGC	2 cut(s)	177, 219
BlsI	GCNGC	2 cut(s)	178, 220
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	139
BoxI	GACNNNNGTC	1 cut(s)	250
BpiI	GAAGAC	2 cut(s)	78, 204
BsaAI	YACGTR	1 cut(s)	286
BsaBI	GATNNNNATC	1 cut(s)	169
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	90
BseJI	GATNNNNATC	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	163, 230
BshFI	GGCC	2 cut(s)	95, 207
BshNI	GGYRCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	106
BsnI	GGCC	2 cut(s)	95, 207
Bsp1286I	GDGCHC	1 cut(s)	119
BspACI	CCGC	1 cut(s)	304
BspANI	GGCC	2 cut(s)	95, 207
BspCNI	CTCAG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	139
BspT107I	GGYRCC	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	90
BssNI	GRCGYC	1 cut(s)	66
Bst4CI	ACNGT	3 cut(s)	18, 214, 249
BstACI	GRCGYC	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstBAI	YACGTR	1 cut(s)	286
BstDEI	CTNAG	3 cut(s)	77, 113, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstPAI	GACNNNNGTC	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	2 cut(s)	163, 230
BstV2I	GAAGAC	2 cut(s)	78, 204
BsuRI	GGCC	2 cut(s)	95, 207
BtsIMutI	CAGTG	1 cut(s)	67
CaiI	CAGNNNCTG	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	205
CspCI	CAANNNNNGTGG	4 cut(s)	61, 85, 96, 120
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	9 cut(s)	13, 47, 95, 128, 147, 153, 176, 207, 235
CviKI_1	RGCY	9 cut(s)	13, 47, 95, 128, 147, 153, 176, 207, 235
DdeI	CTNAG	3 cut(s)	77, 113, 321
EaeI	YGGCCR	1 cut(s)	93
Eco57I	CTGAAG	1 cut(s)	33
FaeI	CATG	1 cut(s)	196
FaiI	YATR	5 cut(s)	150, 161, 194, 275, 309
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FatI	CATG	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	177, 219
Fsp4HI	GCNGC	2 cut(s)	177, 219
GluI	GCNGC	2 cut(s)	177, 219
HaeIII	GGCC	2 cut(s)	95, 207
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	1 cut(s)	196
HinfI	GANTC	4 cut(s)	56, 182, 189, 261
HphI	GGTGA	1 cut(s)	65
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	1 cut(s)	186
HpyCH4III	ACNGT	3 cut(s)	18, 214, 249
HpyCH4IV	ACGT	2 cut(s)	66, 285
HpyCH4V	TGCA	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	3 cut(s)	77, 113, 321
HpySE526I	ACGT	2 cut(s)	66, 285
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	196
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	6 cut(s)	6, 36, 73, 114, 120, 171
Lsp1109I	GCAGC	2 cut(s)	163, 230
MaeII	ACGT	2 cut(s)	66, 285
MaeIII	GTNAC	1 cut(s)	62
MboII	GAAGA	2 cut(s)	78, 209
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	1 cut(s)	276
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	1 cut(s)	100
MslI	CAYNNNNRTG	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	224
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	1 cut(s)	139
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	62
OliI	CACNNNNGTG	1 cut(s)	122
PfeI	GAWTC	4 cut(s)	56, 182, 189, 261
PkrI	GCNGC	2 cut(s)	178, 220
Ppu21I	YACGTR	1 cut(s)	286
PshAI	GACNNNNGTC	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	122
SatI	GCNGC	2 cut(s)	177, 219
Sau96I	GGNCC	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	6 cut(s)	49, 55, 69, 78, 178, 288
SfcI	CTRYAG	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	276
SsiI	CCGC	1 cut(s)	304
TaaI	ACNGT	3 cut(s)	18, 214, 249
TaiI	ACGT	2 cut(s)	69, 288
TasI	AATT	1 cut(s)	276
TfiI	GAWTC	4 cut(s)	56, 182, 189, 261
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	2 cut(s)	176, 218
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
ZraI	GACGTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.