Rorug02G0649900
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000401
Physical Location & Seq
Forward (+)
75863416 .. 75864998
1583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0649900.1

Sequence Viewer

Length: 591 bp
ATGGCTTCAGAGTCTTCGACGGTGGCTAAAGACGAGAAGAATGTGTCCTCTTTTGTTGATTCGAGTAGTCAACGGCGGAAAACGAGTTTCTTGATGGCTCAAGCGGGTCTCAGACTCTTAGTTGTTGCCTTCACATTGGTCGCAATCTCTGTAATGGTCACCAACCGCCAGTCCGTCGTCATCTTTGGATTGAACTTCCAAGCACGATACTCCTACTCGTCTGCCTTGACGTTCTTGGTTGCTGCGGATGCTGTGTTGTGTTCCTTCTCAGCACTGTCGTTGGTCTTCATCTACATCTTAAGCCGTTCTGGGACAACTTCGCCTCTCAAGAAGTACTTCTTCCTCTTCTTGCTTGATACGGTGATGATGGTGTTAATAATAGCTGGATGTGCAGCTGCGACTGCGATAGGCTACCTGGGAAAGTATGGGGAAGAACACATGACTTGGCATGCAACTTGTGGATATGTGTCCAAGTTCTGCAACAGAATGTCCATCTCTCTTGCATTTTCATACTTGGCCTTCTTTGCCTGCTTGCTTCTCAATCTCATGTCGGCTCATGCTCTCATCTATCGCCCTATTATCAAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

196

Amino Acids

21.54

Weight (kDa)

9.4

Isoelectric Point (pI)

35.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 30 - 176 6.2e-37 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 76, 104, 166, 245
AfaI GTAC 1 cut(s) 335
AflII CTTAAG 1 cut(s) 298
AgsI TTSAA 1 cut(s) 193
AjnI CCWGG 1 cut(s) 414
AluBI AGCT 2 cut(s) 383, 395
AluI AGCT 2 cut(s) 383, 395
Alw26I GTCTC 1 cut(s) 113
AoxI GGCC 1 cut(s) 516
ApeKI GCWGC 3 cut(s) 242, 392, 395
Asp700I GAANNNNTTC 1 cut(s) 335
AsuHPI GGTGA 2 cut(s) 151, 373
BbsI GAAGAC 2 cut(s) 6, 277
BbvI GCAGC 3 cut(s) 229, 382, 404
BccI CCATC 3 cut(s) 88, 361, 500
BceAI ACGGC 2 cut(s) 89, 288
BciT130I CCWGG 1 cut(s) 416
BcoDI GTCTC 1 cut(s) 113
BfrI CTTAAG 1 cut(s) 298
BisI GCNGC 3 cut(s) 243, 393, 396
BlsI GCNGC 3 cut(s) 244, 394, 397
BmcAI AGTACT 1 cut(s) 335
Bme1390I CCNGG 1 cut(s) 416
BmrFI CCNGG 1 cut(s) 416
BmsI GCATC 1 cut(s) 238
BpiI GAAGAC 2 cut(s) 6, 277
BpuEI CTTGAG 2 cut(s) 84, 311
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 415
Bse1I ACTGG 1 cut(s) 169
BseBI CCWGG 1 cut(s) 416
BseDI CCNNGG 1 cut(s) 415
BseGI GGATG 2 cut(s) 253, 392
BseMII CTCAG 2 cut(s) 124, 282
BseNI ACTGG 1 cut(s) 169
BseXI GCAGC 3 cut(s) 229, 382, 404
BsgI GTGCAG 1 cut(s) 411
BshFI GGCC 1 cut(s) 518
BslFI GGGAC 1 cut(s) 325
BsmAI GTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 325
BsnI GGCC 1 cut(s) 518
Bso31I GGTCTC 1 cut(s) 113
BspACI CCGC 4 cut(s) 76, 104, 166, 245
BspANI GGCC 1 cut(s) 518
BspCNI CTCAG 2 cut(s) 123, 281
BspTI CTTAAG 1 cut(s) 298
BspTNI GGTCTC 1 cut(s) 113
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 415
Bst2UI CCWGG 1 cut(s) 416
Bst4CI ACNGT 3 cut(s) 22, 276, 361
Bst6I CTCTTC 1 cut(s) 350
BstAFI CTTAAG 1 cut(s) 298
BstC8I GCNNGC 3 cut(s) 450, 529, 533
BstDEI CTNAG 3 cut(s) 110, 118, 268
BstEII GGTNACC 1 cut(s) 157
BstF5I GGATG 2 cut(s) 253, 392
BstMAI GTCTC 1 cut(s) 113
BstMWI GCNNNNNNNGC 4 cut(s) 248, 389, 401, 524
BstNI CCWGG 1 cut(s) 416
BstNSI RCATGY 1 cut(s) 452
BstPI GGTNACC 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 414
BstV1I GCAGC 3 cut(s) 229, 382, 404
BstV2I GAAGAC 2 cut(s) 6, 277
BsuRI GGCC 1 cut(s) 518
BtsCI GGATG 2 cut(s) 253, 392
BtsIMutI CAGTG 1 cut(s) 272
Cac8I GCNNGC 3 cut(s) 450, 529, 533
Csp6I GTAC 1 cut(s) 334
CviAII CATG 4 cut(s) 439, 449, 547, 557
CviJI RGCY 9 cut(s) 5, 26, 98, 303, 383, 395, 411, 518, 554
CviKI_1 RGCY 9 cut(s) 5, 26, 98, 303, 383, 395, 411, 518, 554
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 3 cut(s) 110, 118, 268
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
EciI GGCGGA 1 cut(s) 91
Eco31I GGTCTC 1 cut(s) 113
Eco91I GGTNACC 1 cut(s) 157
EcoO65I GGTNACC 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 414
FaeI CATG 4 cut(s) 442, 452, 550, 560
FaiI YATR 7 cut(s) 426, 440, 450, 465, 511, 548, 558
FalI AAGNNNNNCTT 4 cut(s) 320, 352, 323, 355
FaqI GGGAC 1 cut(s) 325
FatI CATG 4 cut(s) 438, 448, 546, 556
FauI CCCGC 1 cut(s) 97
Fnu4HI GCNGC 3 cut(s) 243, 393, 396
FokI GGATG 2 cut(s) 260, 399
Fsp4HI GCNGC 3 cut(s) 243, 393, 396
GluI GCNGC 3 cut(s) 243, 393, 396
HaeIII GGCC 1 cut(s) 518
Hin1II CATG 4 cut(s) 442, 452, 550, 560
HincII GTYRAC 1 cut(s) 71
HindII GTYRAC 1 cut(s) 71
HinfI GANTC 3 cut(s) 11, 59, 114
HphI GGTGA 2 cut(s) 151, 373
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 2 cut(s) 10, 113
Hpy188III TCNNGA 3 cut(s) 91, 328, 583
Hpy8I GTNNAC 1 cut(s) 71
Hpy99I CGWCG 2 cut(s) 22, 179
HpyAV CCTTC 3 cut(s) 139, 274, 529
HpyCH4III ACNGT 3 cut(s) 22, 276, 361
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 4 cut(s) 392, 452, 480, 503
HpyF10VI GCNNNNNNNGC 4 cut(s) 248, 389, 401, 524
HpyF3I CTNAG 3 cut(s) 110, 118, 268
HpySE526I ACGT 1 cut(s) 230
Hsp92II CATG 4 cut(s) 442, 452, 550, 560
LpnPI CCDG 6 cut(s) 182, 294, 369, 401, 428, 541
Lsp1109I GCAGC 3 cut(s) 229, 382, 404
LweI GCATC 1 cut(s) 238
MaeII ACGT 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 157
MboII GAAGA 6 cut(s) 6, 49, 277, 331, 337, 443
MlyI GAGTC 2 cut(s) 20, 108
MnlI CCTC 3 cut(s) 58, 333, 353
MroXI GAANNNNTTC 1 cut(s) 335
MseI TTAA 2 cut(s) 299, 374
MspA1I CMGCKG 1 cut(s) 395
MspCI CTTAAG 1 cut(s) 298
MspR9I CCNGG 1 cut(s) 416
MvaI CCWGG 1 cut(s) 416
MwoI GCNNNNNNNGC 4 cut(s) 248, 389, 401, 524
NlaIII CATG 4 cut(s) 442, 452, 550, 560
NmuCI GTSAC 1 cut(s) 157
NspI RCATGY 1 cut(s) 452
PaeI GCATGC 1 cut(s) 452
PdmI GAANNNNTTC 1 cut(s) 335
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 3 cut(s) 244, 394, 397
PleI GAGTC 2 cut(s) 19, 108
PpsI GAGTC 2 cut(s) 19, 108
Psp6I CCWGG 1 cut(s) 414
PspEI GGTNACC 1 cut(s) 157
PspGI CCWGG 1 cut(s) 414
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
SaqAI TTAA 2 cut(s) 299, 374
SatI GCNGC 3 cut(s) 243, 393, 396
ScaI AGTACT 1 cut(s) 335
SchI GAGTC 2 cut(s) 20, 108
ScrFI CCNGG 1 cut(s) 416
SetI ASST 4 cut(s) 233, 385, 397, 417
SfaNI GCATC 1 cut(s) 238
SmlI CTYRAG 3 cut(s) 99, 298, 326
SmoI CTYRAG 3 cut(s) 99, 298, 326
SphI GCATGC 1 cut(s) 452
SsiI CCGC 4 cut(s) 76, 104, 166, 245
StyD4I CCNGG 1 cut(s) 414
TaaI ACNGT 3 cut(s) 22, 276, 361
TaiI ACGT 1 cut(s) 233
TaqI TCGA 2 cut(s) 17, 62
TatI WGTACW 1 cut(s) 333
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 2 cut(s) 299, 374
Tru9I TTAA 2 cut(s) 299, 374
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 3 cut(s) 242, 392, 395
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 2 cut(s) 277, 498
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 1 cut(s) 279
Vha464I CTTAAG 1 cut(s) 298
XceI RCATGY 1 cut(s) 452
XmnI GAANNNNTTC 1 cut(s) 335
ZrmI AGTACT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.