Rorug02G0650300
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000401
Physical Location & Seq
Forward (+)
75880960 .. 75882644
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0650300.1

Sequence Viewer

Length: 375 bp
ATGAGCTACCACCAGCACCATGGCCCTCAAGAACCCTACCCTCCGCCTCCGCCTCCGCCACCACCAGGCTACCCCTATCCCCAACCAGGCCCGCCGGGATCAGCGCCGCCCTACGAAGGCTACCCTCCGCCGCCGCCTCCGGGGTATCCTCCTCACGGATACGGCCCTCCTCCGCCGCCGCCGCATCCTCCGCCGTACGAGGGCTACCAAGGCTATTTCAACGGGGGTTACCCTCCGCCGCAATACCAGCAGCCCTGTTACCACGATCATCACCATTACCAGGCTCAGGATGATGGCTGCATCTCTTTCTTGAGAGGCTGTTTTGGTACACTATTCTGCTGTTGTTTGCTAGAGGAATGCTGCTTCTTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

124

Amino Acids

13.81

Weight (kDa)

5.55

Isoelectric Point (pI)

77.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 106
AfaI GTAC 2 cut(s) 197, 328
AfiI CCNNNNNNNGG 8 cut(s) 65, 86, 116, 140, 155, 200, 280, 286
AgsI TTSAA 1 cut(s) 220
AjnI CCWGG 3 cut(s) 64, 85, 279
AluBI AGCT 1 cut(s) 6
AluI AGCT 1 cut(s) 6
AlwI GGATC 1 cut(s) 106
AoxI GGCC 3 cut(s) 22, 88, 163
ApeKI GCWGC 3 cut(s) 250, 297, 360
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 3 cut(s) 23, 89, 164
AsuC2I CCSGG 2 cut(s) 96, 141
AsuHPI GGTGA 1 cut(s) 263
BbvI GCAGC 3 cut(s) 262, 284, 347
BccI CCATC 1 cut(s) 287
BceAI ACGGC 2 cut(s) 178, 178
BciT130I CCWGG 3 cut(s) 66, 87, 281
BciVI GTATCC 2 cut(s) 152, 156
BcnI CCSGG 2 cut(s) 96, 141
BfaI CTAG 1 cut(s) 350
BfoI RGCGCY 1 cut(s) 107
BfuI GTATCC 2 cut(s) 152, 156
Bme1390I CCNGG 5 cut(s) 66, 87, 96, 141, 281
BmgT120I GGNCC 3 cut(s) 23, 89, 164
BmrFI CCNGG 5 cut(s) 66, 87, 96, 141, 281
BmsI GCATC 2 cut(s) 193, 309
Bpu10I CCTNAGC 1 cut(s) 285
BpuEI CTTGAG 2 cut(s) 12, 331
BpuMI CCSGG 2 cut(s) 96, 141
BsaJI CCNNGG 3 cut(s) 19, 140, 208
Bsc4I CCNNNNNNNGG 8 cut(s) 65, 86, 116, 140, 155, 200, 280, 286
BseBI CCWGG 3 cut(s) 66, 87, 281
BseDI CCNNGG 3 cut(s) 19, 140, 208
BseGI GGATG 2 cut(s) 184, 295
BseLI CCNNNNNNNGG 8 cut(s) 65, 86, 116, 140, 155, 200, 280, 286
BseMII CTCAG 1 cut(s) 299
BseRI GAGGAG 2 cut(s) 141, 159
BseXI GCAGC 3 cut(s) 262, 284, 347
BshFI GGCC 3 cut(s) 24, 90, 165
BsiSI CCGG 2 cut(s) 95, 140
BsiWI CGTACG 1 cut(s) 195
BslI CCNNNNNNNGG 8 cut(s) 65, 86, 116, 140, 155, 200, 280, 286
BsmI GAATGC 1 cut(s) 362
BsnI GGCC 3 cut(s) 24, 90, 165
Bsp143I GATC 2 cut(s) 98, 265
Bsp19I CCATGG 1 cut(s) 19
BspANI GGCC 3 cut(s) 24, 90, 165
BspCNI CTCAG 1 cut(s) 298
BspPI GGATC 1 cut(s) 106
BssECI CCNNGG 3 cut(s) 19, 140, 208
BssMI GATC 2 cut(s) 98, 265
BssT1I CCWWGG 2 cut(s) 19, 208
Bst2UI CCWGG 3 cut(s) 66, 87, 281
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 285
BstDSI CCRYGG 1 cut(s) 19
BstEII GGTNACC 1 cut(s) 227
BstF5I GGATG 2 cut(s) 184, 295
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 2 cut(s) 101, 268
BstMBI GATC 2 cut(s) 98, 265
BstMWI GCNNNNNNNGC 4 cut(s) 181, 190, 210, 247
BstNI CCWGG 3 cut(s) 66, 87, 281
BstPI GGTNACC 1 cut(s) 227
BstSCI CCNGG 5 cut(s) 64, 85, 94, 139, 279
BstV1I GCAGC 3 cut(s) 262, 284, 347
BstXI CCANNNNNNTGG 1 cut(s) 20
BsuI GTATCC 2 cut(s) 152, 156
BsuRI GGCC 3 cut(s) 24, 90, 165
BtgI CCRYGG 1 cut(s) 19
BtsCI GGATG 2 cut(s) 184, 295
Cac8I GCNNGC 1 cut(s) 92
CfoI GCGC 1 cut(s) 106
Cfr13I GGNCC 3 cut(s) 23, 89, 164
Csp6I GTAC 2 cut(s) 196, 327
CviAII CATG 1 cut(s) 20
CviQI GTAC 2 cut(s) 196, 327
DdeI CTNAG 1 cut(s) 285
DpnI GATC 2 cut(s) 100, 267
DpnII GATC 2 cut(s) 98, 265
EciI GGCGGA 7 cut(s) 33, 39, 45, 117, 162, 180, 225
Eco130I CCWWGG 2 cut(s) 19, 208
Eco91I GGTNACC 1 cut(s) 227
EcoO65I GGTNACC 1 cut(s) 227
EcoRII CCWGG 3 cut(s) 64, 85, 279
EcoT14I CCWWGG 2 cut(s) 19, 208
ErhI CCWWGG 2 cut(s) 19, 208
FaeI CATG 1 cut(s) 23
FaiI YATR 1 cut(s) 21
FatI CATG 1 cut(s) 19
FauI CCCGC 1 cut(s) 99
FokI GGATG 2 cut(s) 171, 302
FspBI CTAG 1 cut(s) 350
GlaI GCGC 1 cut(s) 105
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 3 cut(s) 24, 90, 165
HapII CCGG 2 cut(s) 95, 140
HhaI GCGC 1 cut(s) 106
Hin1II CATG 1 cut(s) 23
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HpaII CCGG 2 cut(s) 95, 140
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 1 cut(s) 329
Hpy188III TCNNGA 3 cut(s) 29, 287, 310
Hpy8I GTNNAC 1 cut(s) 329
HpyAV CCTTC 1 cut(s) 110
HpyCH4V TGCA 1 cut(s) 300
HpyF10VI GCNNNNNNNGC 4 cut(s) 181, 190, 210, 247
HpyF3I CTNAG 1 cut(s) 285
Hsp92II CATG 1 cut(s) 23
HspAI GCGC 1 cut(s) 104
Kzo9I GATC 2 cut(s) 98, 265
Lsp1109I GCAGC 3 cut(s) 262, 284, 347
LweI GCATC 2 cut(s) 193, 309
MaeI CTAG 1 cut(s) 350
MaeIII GTNAC 2 cut(s) 227, 257
MalI GATC 2 cut(s) 100, 267
MboI GATC 2 cut(s) 98, 265
MspI CCGG 2 cut(s) 95, 140
MspR9I CCNGG 5 cut(s) 66, 87, 96, 141, 281
Mva1269I GAATGC 1 cut(s) 362
MvaI CCWGG 3 cut(s) 66, 87, 281
MwoI GCNNNNNNNGC 4 cut(s) 181, 190, 210, 247
NciI CCSGG 2 cut(s) 96, 141
NcoI CCATGG 1 cut(s) 19
NdeII GATC 2 cut(s) 98, 265
NlaIII CATG 1 cut(s) 23
PctI GAATGC 1 cut(s) 362
Pfl23II CGTACG 1 cut(s) 195
Psp6I CCWGG 3 cut(s) 64, 85, 279
PspEI GGTNACC 1 cut(s) 227
PspGI CCWGG 3 cut(s) 64, 85, 279
PspLI CGTACG 1 cut(s) 195
PspPI GGNCC 3 cut(s) 23, 89, 164
RsaI GTAC 2 cut(s) 197, 328
RsaNI GTAC 2 cut(s) 196, 327
Sau3AI GATC 2 cut(s) 98, 265
Sau96I GGNCC 3 cut(s) 23, 89, 164
ScrFI CCNGG 5 cut(s) 66, 87, 96, 141, 281
SetI ASST 1 cut(s) 8
SfaNI GCATC 2 cut(s) 193, 309
SmlI CTYRAG 2 cut(s) 27, 310
SmoI CTYRAG 2 cut(s) 27, 310
SspMI CTAG 1 cut(s) 350
StyD4I CCNGG 5 cut(s) 64, 85, 94, 139, 279
StyI CCWWGG 2 cut(s) 19, 208
TauI GCSGC 7 cut(s) 109, 133, 136, 178, 181, 184, 241
TseI GCWGC 3 cut(s) 250, 297, 360
TspGWI ACGGA 1 cut(s) 171
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.