AT3G05160
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
1453072 .. 1457295
4224 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G05160.3

Sequence Viewer

Length: 1377 bp
ATGGAAGAAGGACTTCTTCGGCATGAAAACGACAGAGATGATCGTCGTATCACAGCTTGTGTTATCCTCAGCACTTTTGTTGCTGTTTGTAGTTCCTTCAGCTATGGATGTGCTAATGGTTATACTTCCGGCGCTGAAACTGCAATCATGAAAGAGTTAGACCTTTCTATGGCACAATTTTCAGCGTTTGGTTCCTTTTTGAACTTGGGAGGTGCGGTGGGAGCTTTGTTTAGCGGTCAATTAGCAGTCATCCTTGGCAGAAGACGAACGTTGTGGGCATGCGATTTGTTCTGCATTTTTGGTTGGCTCTCCATTGCTTTTGCAAAGAATGTCTTGTGGCTGGACTTGGGAAGAATTTCTTTAGGCATCGGAGTGGGCTTGACTAGCTACGTGGTCCCTGTCTATATTGCGGAAATCACTCCTAAACATGTTCGTGGCGCATTTTCTGCTTCAACCCTGCTTCTTCAAAACAGTGGAATTTCTCTGATTTATTTTTTCGGAACTGTAATTAATTGGCGGGTTCTGGCTGTTATAGGTGCTCTTCCATGTTTCATTCCAGTGATCGGTATATATTTCATACCGGAATCACCAAGATGGTTGGCTAAAATCGGTTCAGTTAAAGAAGTAGAAAACTCTCTGCATCGCCTTAGAGGGAAAGATGCTGATGTTTCAGATGAAGCCGCTGAAATTCAGGTTATGACAAAAATGCTTGAAGAAGATTCAAAGTCCAGTTTTTGTGACATGTTTCAGAAGAAGTATAGACGAACTCTAGTGGTTGGAATTGGTTTAATGTTGATACAACAATTATCTGGAGCTAGCGGTATCACATATTATTCAAATGCCATATTTAGAAAAGCTGGCTTTTCAGAGAGACTTGGATCAATGATATTTGGTGTGTTCGTGATCCCAAAAGCTTTGGTTGGTCTGATTCTTGTGGATAGATGGGGAAGACGACCACTCCTATTGGCTTCTGCTGTTGGAATGTCTATCGGATCCTTGCTTATTGGGGTTAGCTTCACGTTACAGGAAATGAATCTGTTTCCTGAATTTATTCCAGTTTTCGTCTTCATAAATATTCTGGTCTACTTTGGATTTTTTGCAATCGGTATAGGAGGGCTACCTTGGATCATTATGTCTGAGATATTTCCGATAAATATAAAAGTTTCAGCAGGGTCAATCGTTGCATTAACATCGTGGACCACTGGGTGGTTCGTTAGTTATGGTTTCAACTTTATGTTTGAATGGAGCGCACAAGGAACCTTTTACATATTTGCGATGGTGGGGGGATTGTCATTGCTTTTTATATGGATGCTCGTGCCGGAAACCAAAGGACAGTCGCTTGAAGAATTGCAAGCATCCCTTACGGGGACAACCTAA

Protein Analysis

458

Amino Acids

50.3

Weight (kDa)

7.54

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 2 - 356 8e-21 Major Facilitator Superfamily
Sugar_tr PF00083 9 - 403 5e-83 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1206
AccI GTMKAC 1 cut(s) 1083
AciI CCGC 6 cut(s) 215, 234, 410, 517, 681, 819
AclI AACGTT 1 cut(s) 269
AclWI GGATC 5 cut(s) 886, 898, 987, 1000, 1133
AcsI RAATTY 4 cut(s) 354, 477, 687, 1046
AcuI CTGAAG 1 cut(s) 82
AdeI CACNNNGTG 1 cut(s) 1206
AfiI CCNNNNNNNGG 4 cut(s) 169, 563, 1206, 1365
AflIII ACRYGT 2 cut(s) 427, 741
AgsI TTSAA 9 cut(s) 202, 453, 467, 713, 723, 837, 1228, 1241, 1343
AluBI AGCT 8 cut(s) 56, 102, 224, 387, 815, 857, 914, 1014
AluI AGCT 8 cut(s) 56, 102, 224, 387, 815, 857, 914, 1014
Alw21I GWGCWC 1 cut(s) 541
Alw26I GTCTC 1 cut(s) 865
AlwI GGATC 5 cut(s) 886, 898, 987, 1000, 1133
ApoI RAATTY 4 cut(s) 354, 477, 687, 1046
AseI ATTAAT 1 cut(s) 510
Asp700I GAANNNNTTC 3 cut(s) 12, 355, 1050
AspLEI GCGC 3 cut(s) 134, 440, 1250
AspS9I GGNCC 2 cut(s) 394, 1197
AsuHPI GGTGA 1 cut(s) 579
AsuNHI GCTAGC 1 cut(s) 815
AvaII GGWCC 2 cut(s) 394, 1197
BamHI GGATCC 1 cut(s) 992
BauI CACGAG 1 cut(s) 1313
BbsI GAAGAC 3 cut(s) 268, 955, 1057
Bbv12I GWGCWC 1 cut(s) 541
BbvCI CCTCAGC 1 cut(s) 68
BccI CCATC 3 cut(s) 588, 936, 1270
BcgI CGANNNNNNTGC 2 cut(s) 1173, 1207
BcoDI GTCTC 1 cut(s) 865
BfaI CTAG 3 cut(s) 384, 770, 816
BfoI RGCGCY 1 cut(s) 135
BisI GCNGC 1 cut(s) 681
BlsI GCNGC 1 cut(s) 682
Bme18I GGWCC 2 cut(s) 394, 1197
BmgT120I GGNCC 2 cut(s) 394, 1197
BmiI GGNNCC 4 cut(s) 193, 396, 994, 1258
BmrI ACTGGG 1 cut(s) 1212
BmsI GCATC 5 cut(s) 375, 649, 649, 1299, 1364
BmtI GCTAGC 1 cut(s) 819
BmuI ACTGGG 1 cut(s) 1212
BpiI GAAGAC 3 cut(s) 268, 955, 1057
BpmI CTGGAG 1 cut(s) 831
Bpu10I CCTNAGC 1 cut(s) 68
BsaAI YACGTR 1 cut(s) 391
BsaJI CCNNGG 2 cut(s) 253, 1121
BsaWI WCCGGW 1 cut(s) 580
BsaXI ACNNNNNCTCC 4 cut(s) 201, 231, 942, 972
Bsc4I CCNNNNNNNGG 4 cut(s) 169, 563, 1206, 1365
Bse1I ACTGG 4 cut(s) 557, 729, 1055, 1207
Bse3DI GCAATG 2 cut(s) 312, 1292
BseDI CCNNGG 2 cut(s) 253, 1121
BseGI GGATG 4 cut(s) 113, 249, 1314, 1355
BseLI CCNNNNNNNGG 4 cut(s) 169, 563, 1206, 1365
BseMI GCAATG 2 cut(s) 312, 1292
BseMII CTCAG 2 cut(s) 82, 1128
BseNI ACTGG 4 cut(s) 557, 729, 1055, 1207
BsiHKAI GWGCWC 1 cut(s) 541
BsiSI CCGG 3 cut(s) 129, 581, 1319
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 4 cut(s) 169, 563, 1206, 1365
BsmAI GTCTC 1 cut(s) 865
BsmFI GGGAC 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 541
Bsp143I GATC 6 cut(s) 40, 561, 878, 903, 992, 1125
BspACI CCGC 6 cut(s) 215, 234, 410, 517, 681, 819
BspCNI CTCAG 2 cut(s) 81, 1129
BspHI TCATGA 1 cut(s) 147
BspLI GGNNCC 4 cut(s) 193, 396, 994, 1258
BspOI GCTAGC 1 cut(s) 819
BspPI GGATC 5 cut(s) 886, 898, 987, 1000, 1133
BspQI GCTCTTC 1 cut(s) 546
BsrDI GCAATG 2 cut(s) 312, 1292
BsrI ACTGG 4 cut(s) 557, 729, 1055, 1207
BssECI CCNNGG 2 cut(s) 253, 1121
BssMI GATC 6 cut(s) 40, 561, 878, 903, 992, 1125
BssSI CACGAG 1 cut(s) 1313
BssT1I CCWWGG 2 cut(s) 253, 1121
Bst2BI CACGAG 1 cut(s) 1313
Bst4CI ACNGT 3 cut(s) 473, 505, 1335
Bst6I CTCTTC 1 cut(s) 546
BstAPI GCANNNNNTGC 1 cut(s) 446
BstBAI YACGTR 1 cut(s) 391
BstC8I GCNNGC 4 cut(s) 280, 817, 859, 1353
BstDEI CTNAG 3 cut(s) 68, 647, 1137
BstF5I GGATG 4 cut(s) 113, 249, 1314, 1355
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 3 cut(s) 134, 440, 1250
BstKTI GATC 6 cut(s) 43, 564, 881, 906, 995, 1128
BstMAI GTCTC 1 cut(s) 865
BstMBI GATC 6 cut(s) 40, 561, 878, 903, 992, 1125
BstMWI GCNNNNNNNGC 4 cut(s) 140, 221, 384, 446
BstNSI RCATGY 3 cut(s) 282, 431, 745
BstV2I GAAGAC 3 cut(s) 268, 955, 1057
BstX2I RGATCY 1 cut(s) 992
BstYI RGATCY 1 cut(s) 992
BtgZI GCGATG 2 cut(s) 626, 1289
BtsCI GGATG 4 cut(s) 113, 249, 1314, 1355
BtsIMutI CAGTG 3 cut(s) 478, 564, 1200
Cac8I GCNNGC 4 cut(s) 280, 817, 859, 1353
CciI TCATGA 1 cut(s) 147
CfoI GCGC 3 cut(s) 134, 440, 1250
Cfr13I GGNCC 2 cut(s) 394, 1197
CspCI CAANNNNNGTGG 2 cut(s) 945, 980
CviAII CATG 6 cut(s) 23, 148, 279, 428, 546, 742
DdeI CTNAG 3 cut(s) 68, 647, 1137
DpnI GATC 6 cut(s) 42, 563, 880, 905, 994, 1127
DpnII GATC 6 cut(s) 40, 561, 878, 903, 992, 1125
DraIII CACNNNGTG 1 cut(s) 1206
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
Eco130I CCWWGG 2 cut(s) 253, 1121
Eco47I GGWCC 2 cut(s) 394, 1197
Eco57I CTGAAG 1 cut(s) 82
EcoT14I CCWWGG 2 cut(s) 253, 1121
ErhI CCWWGG 2 cut(s) 253, 1121
FaeI CATG 6 cut(s) 26, 151, 282, 431, 549, 745
FalI AAGNNNNNCTT 8 cut(s) 29, 32, 317, 349, 343, 375, 1344, 1376
FaqI GGGAC 1 cut(s) 380
FatI CATG 6 cut(s) 22, 147, 278, 427, 545, 741
FauI CCCGC 1 cut(s) 510
FblI GTMKAC 1 cut(s) 1083
Fnu4HI GCNGC 1 cut(s) 681
FokI GGATG 4 cut(s) 120, 236, 1321, 1342
Fsp4HI GCNGC 1 cut(s) 681
FspBI CTAG 3 cut(s) 384, 770, 816
GlaI GCGC 3 cut(s) 133, 439, 1249
GluI GCNGC 1 cut(s) 681
GsuI CTGGAG 1 cut(s) 831
HaeII RGCGCY 1 cut(s) 135
HapII CCGG 3 cut(s) 129, 581, 1319
HhaI GCGC 3 cut(s) 134, 440, 1250
Hin1II CATG 6 cut(s) 26, 151, 282, 431, 549, 745
Hin6I GCGC 3 cut(s) 132, 438, 1248
HinP1I GCGC 3 cut(s) 132, 438, 1248
HindIII AAGCTT 1 cut(s) 912
HinfI GANTC 4 cut(s) 584, 719, 928, 1033
HpaII CCGG 3 cut(s) 129, 581, 1319
HphI GGTGA 1 cut(s) 579
Hpy166II GTNNAC 2 cut(s) 1084, 1197
Hpy188III TCNNGA 4 cut(s) 148, 810, 901, 1043
Hpy8I GTNNAC 2 cut(s) 1084, 1197
Hpy99I CGWCG 1 cut(s) 48
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 3 cut(s) 473, 505, 1335
HpyCH4IV ACGT 3 cut(s) 269, 390, 1019
HpyCH4V TGCA 7 cut(s) 143, 294, 323, 640, 1100, 1184, 1351
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 221, 384, 446
HpyF3I CTNAG 3 cut(s) 68, 647, 1137
HpySE526I ACGT 3 cut(s) 269, 390, 1019
Hsp92II CATG 6 cut(s) 26, 151, 282, 431, 549, 745
HspAI GCGC 3 cut(s) 132, 438, 1248
Kzo9I GATC 6 cut(s) 40, 561, 878, 903, 992, 1125
LguI GCTCTTC 1 cut(s) 546
LmnI GCTCC 3 cut(s) 221, 812, 1245
LweI GCATC 5 cut(s) 375, 649, 649, 1299, 1364
MaeI CTAG 3 cut(s) 384, 770, 816
MaeII ACGT 3 cut(s) 269, 390, 1019
MaeIII GTNAC 2 cut(s) 737, 1020
MalI GATC 6 cut(s) 42, 563, 880, 905, 994, 1127
MboI GATC 6 cut(s) 40, 561, 878, 903, 992, 1125
MflI RGATCY 1 cut(s) 992
MhlI GDGCHC 1 cut(s) 541
MmeI TCCRAC 2 cut(s) 757, 958
MnlI CCTC 4 cut(s) 77, 203, 644, 1106
MroXI GAANNNNTTC 3 cut(s) 12, 355, 1050
MseI TTAA 4 cut(s) 510, 618, 788, 1187
MslI CAYNNNNRTG 4 cut(s) 371, 432, 557, 592
MspA1I CMGCKG 1 cut(s) 683
MspI CCGG 3 cut(s) 129, 581, 1319
MwoI GCNNNNNNNGC 4 cut(s) 140, 221, 384, 446
NdeII GATC 6 cut(s) 40, 561, 878, 903, 992, 1125
NheI GCTAGC 1 cut(s) 815
NlaIII CATG 6 cut(s) 26, 151, 282, 431, 549, 745
NlaIV GGNNCC 4 cut(s) 193, 396, 994, 1258
NmuCI GTSAC 1 cut(s) 737
NspI RCATGY 3 cut(s) 282, 431, 745
PaeI GCATGC 1 cut(s) 282
PagI TCATGA 1 cut(s) 147
PciI ACATGT 2 cut(s) 427, 741
PciSI GCTCTTC 1 cut(s) 546
PdmI GAANNNNTTC 3 cut(s) 12, 355, 1050
PfeI GAWTC 4 cut(s) 584, 719, 928, 1033
PflMI CCANNNNNTGG 1 cut(s) 1206
PkrI GCNGC 1 cut(s) 682
Ppu21I YACGTR 1 cut(s) 391
PscI ACATGT 2 cut(s) 427, 741
PshBI ATTAAT 1 cut(s) 510
Psp1406I AACGTT 1 cut(s) 269
PspN4I GGNNCC 4 cut(s) 193, 396, 994, 1258
PspPI GGNCC 2 cut(s) 394, 1197
PsuI RGATCY 1 cut(s) 992
RseI CAYNNNNRTG 4 cut(s) 371, 432, 557, 592
SapI GCTCTTC 1 cut(s) 546
SaqAI TTAA 4 cut(s) 510, 618, 788, 1187
SatI GCNGC 1 cut(s) 681
Sau3AI GATC 6 cut(s) 40, 561, 878, 903, 992, 1125
Sau96I GGNCC 2 cut(s) 394, 1197
SduI GDGCHC 1 cut(s) 541
SfaNI GCATC 5 cut(s) 375, 649, 649, 1299, 1364
SinI GGWCC 2 cut(s) 394, 1197
SmiMI CAYNNNNRTG 4 cut(s) 371, 432, 557, 592
SphI GCATGC 1 cut(s) 282
SsiI CCGC 6 cut(s) 215, 234, 410, 517, 681, 819
SspI AATATT 1 cut(s) 1075
SspMI CTAG 3 cut(s) 384, 770, 816
StyI CCWWGG 2 cut(s) 253, 1121
TaaI ACNGT 3 cut(s) 473, 505, 1335
TaiI ACGT 3 cut(s) 272, 393, 1022
TauI GCSGC 1 cut(s) 683
TfiI GAWTC 4 cut(s) 584, 719, 928, 1033
Tru1I TTAA 4 cut(s) 510, 618, 788, 1187
Tru9I TTAA 4 cut(s) 510, 618, 788, 1187
TscAI CASTG 3 cut(s) 478, 564, 1207
TseFI GTSAC 1 cut(s) 737
Tsp45I GTSAC 1 cut(s) 737
TspDTI ATGAA 7 cut(s) 39, 164, 541, 565, 690, 1046, 1057
TspRI CASTG 3 cut(s) 478, 564, 1207
Van91I CCANNNNNTGG 1 cut(s) 1206
VpaK11BI GGWCC 2 cut(s) 394, 1197
VspI ATTAAT 1 cut(s) 510
XapI RAATTY 4 cut(s) 354, 477, 687, 1046
XceI RCATGY 3 cut(s) 282, 431, 745
XmiI GTMKAC 1 cut(s) 1083
XmnI GAANNNNTTC 3 cut(s) 12, 355, 1050
XspI CTAG 3 cut(s) 384, 770, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.