Rmu_sc0000510.1_g000023
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000510.1
OG0000401
Physical Location & Seq
Forward (+)
116620 .. 119610
2991 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000510.1_g000023.1.cds

Sequence Viewer

Length: 963 bp
atggaagaagggctactaactctgtcagggtcaaatggagcttcaagtgattgcagtgacgtcataactccaggagggttctcctcctcggccacccccgttgtcgttctgagcgcattggtggctctttgtggttcctttggctatggctgtgctgtaggatattcatcctctgctgaatcaggaattttggaagacttgggccttactattgcagcatactcactttttggttcaattttgacaattggaggaataattggtgcattagtaaatgggaagctaacggatctcattggtcgtagaggtacaatgtggttctcacaagtgttcagtgctgctgggtggctcaccatggcatttgcacagagtgcttggtggctggatattggaaggttttcattgggagttggcatcgcgataatttgctatgtggccaaaattggtagacaaaaagactttgaagcagctcttcagcatcttagaggaaagaatgccgacatatctcaagaagcagctgaaatcatggactatacaacaacctttgagcagcactcgggaaaagtcatagacttgttccagaagagatatgcttactcactaattgttggagttgggctcatgtccctgcaacattttggtggtgccaatgcagtatctagttatgcaagttctatatttgaagatgcgggtttttcaactagtgttgggactatatcaattgctcttattgggattcctggtgttgtcttgagtgtgctcttaacagacaaagttggaagacgaccacttctaatggtttcggctggtggattgtgcttgagtttgtttcttgtgggattggcattctgctttcaggacctcaatctgtggacggaggtcactcccaatttggtgttcatcggcttgttggtaagtggtcatcttctcaactttaaccaattccaagttggtagcatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

320

Amino Acids

33.56

Weight (kDa)

5.01

Isoelectric Point (pI)

27.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 63
AccB1I GGYRCC 1 cut(s) 644
AccI GTMKAC 1 cut(s) 448
AccII CGCG 1 cut(s) 419
AciI CCGC 1 cut(s) 689
AclWI GGATC 1 cut(s) 297
AcoI YGGCCR 2 cut(s) 90, 435
AcsI RAATTY 1 cut(s) 186
AcuI CTGAAG 1 cut(s) 458
AcyI GRCGYC 1 cut(s) 60
AdeI CACNNNGTG 1 cut(s) 371
AfaI GTAC 1 cut(s) 310
AgsI TTSAA 5 cut(s) 45, 237, 464, 683, 699
AhlI ACTAGT 1 cut(s) 701
AjnI CCWGG 2 cut(s) 70, 739
AjuI GAANNNNNNNTTGG 2 cut(s) 881, 913
AluBI AGCT 4 cut(s) 41, 283, 470, 518
AluI AGCT 4 cut(s) 41, 283, 470, 518
Alw21I GWGCWC 1 cut(s) 762
AlwI GGATC 1 cut(s) 297
Ama87I CYCGRG 1 cut(s) 556
AoxI GGCC 3 cut(s) 90, 202, 435
ApeKI GCWGC 5 cut(s) 215, 338, 467, 515, 550
ApoI RAATTY 1 cut(s) 186
Asp700I GAANNNNTTC 1 cut(s) 397
AspLEI GCGC 1 cut(s) 116
AspS9I GGNCC 2 cut(s) 202, 859
AsuHPI GGTGA 1 cut(s) 343
AvaI CYCGRG 1 cut(s) 556
AvaII GGWCC 1 cut(s) 859
BalI TGGCCA 1 cut(s) 437
BanI GGYRCC 1 cut(s) 644
BanII GRGCYC 1 cut(s) 621
BarI GAAGNNNNNNTAC 1 cut(s) 29
BbsI GAAGAC 2 cut(s) 201, 787
Bbv12I GWGCWC 1 cut(s) 762
BbvI GCAGC 5 cut(s) 227, 325, 479, 527, 562
BciT130I CCWGG 2 cut(s) 72, 741
BcuI ACTAGT 1 cut(s) 701
BfaI CTAG 2 cut(s) 660, 702
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 5 cut(s) 216, 339, 468, 516, 551
BlsI GCNGC 5 cut(s) 217, 340, 469, 517, 552
Bme1390I CCNGG 2 cut(s) 72, 741
Bme18I GGWCC 1 cut(s) 859
BmeT110I CYCGRG 1 cut(s) 556
BmgT120I GGNCC 2 cut(s) 202, 859
BmiI GGNNCC 2 cut(s) 136, 646
BmrFI CCNGG 2 cut(s) 72, 741
BmsI GCATC 3 cut(s) 423, 487, 676
BoxI GACNNNNGTC 1 cut(s) 878
BpiI GAAGAC 2 cut(s) 201, 787
BplI GAGNNNNNCTC 4 cut(s) 539, 571, 603, 635
BpmI CTGGAG 1 cut(s) 54
BpuEI CTTGAG 3 cut(s) 492, 772, 841
BsaBI GATNNNNATC 1 cut(s) 166
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 87, 354
Bse8I GATNNNNATC 1 cut(s) 166
BseBI CCWGG 2 cut(s) 72, 741
BseDI CCNNGG 2 cut(s) 87, 354
BseGI GGATG 1 cut(s) 167
BseJI GATNNNNATC 1 cut(s) 166
BseMII CTCAG 1 cut(s) 101
BseRI GAGGAG 2 cut(s) 73, 76
BseXI GCAGC 5 cut(s) 227, 325, 479, 527, 562
BseYI CCCAGC 1 cut(s) 341
Bsh1236I CGCG 1 cut(s) 419
BshFI GGCC 3 cut(s) 92, 204, 437
BshNI GGYRCC 1 cut(s) 644
BsiHKAI GWGCWC 1 cut(s) 762
BsiHKCI CYCGRG 1 cut(s) 556
BslFI GGGAC 2 cut(s) 610, 724
BsmFI GGGAC 2 cut(s) 610, 724
BsmI GAATGC 2 cut(s) 499, 845
BsnI GGCC 3 cut(s) 92, 204, 437
BsoBI CYCGRG 1 cut(s) 556
Bsp1286I GDGCHC 2 cut(s) 621, 762
Bsp143I GATC 1 cut(s) 289
Bsp19I CCATGG 1 cut(s) 354
Bsp68I TCGCGA 1 cut(s) 419
BspACI CCGC 1 cut(s) 689
BspANI GGCC 3 cut(s) 92, 204, 437
BspCNI CTCAG 1 cut(s) 102
BspFNI CGCG 1 cut(s) 419
BspLI GGNNCC 2 cut(s) 136, 646
BspPI GGATC 1 cut(s) 297
BspQI GCTCTTC 1 cut(s) 477
BspT107I GGYRCC 1 cut(s) 644
BssECI CCNNGG 2 cut(s) 87, 354
BssMI GATC 1 cut(s) 289
BssNI GRCGYC 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 2 cut(s) 72, 741
Bst6I CTCTTC 2 cut(s) 477, 578
BstACI GRCGYC 1 cut(s) 60
BstAPI GCANNNNNTGC 1 cut(s) 371
BstDEI CTNAG 2 cut(s) 110, 482
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 1 cut(s) 167
BstFNI CGCG 1 cut(s) 419
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 1 cut(s) 292
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 2 cut(s) 122, 371
BstNI CCWGG 2 cut(s) 72, 741
BstPAI GACNNNNGTC 1 cut(s) 878
BstSCI CCNGG 2 cut(s) 70, 739
BstSFI CTRYAG 1 cut(s) 156
BstUI CGCG 1 cut(s) 419
BstV1I GCAGC 5 cut(s) 227, 325, 479, 527, 562
BstV2I GAAGAC 2 cut(s) 201, 787
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 3 cut(s) 92, 204, 437
BtgI CCRYGG 1 cut(s) 354
BtgZI GCGATG 1 cut(s) 400
BtsCI GGATG 1 cut(s) 167
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 2 cut(s) 61, 340
BtuMI TCGCGA 1 cut(s) 419
CfoI GCGC 1 cut(s) 116
Cfr13I GGNCC 2 cut(s) 202, 859
Csp6I GTAC 1 cut(s) 309
CspCI CAANNNNNGTGG 2 cut(s) 82, 117
CviAII CATG 3 cut(s) 355, 526, 622
CviQI GTAC 1 cut(s) 309
DdeI CTNAG 2 cut(s) 110, 482
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
DraIII CACNNNGTG 1 cut(s) 371
EaeI YGGCCR 2 cut(s) 90, 435
Eam1104I CTCTTC 2 cut(s) 477, 578
EarI CTCTTC 2 cut(s) 477, 578
Eco130I CCWWGG 1 cut(s) 354
Eco24I GRGCYC 1 cut(s) 621
Eco47I GGWCC 1 cut(s) 859
Eco57I CTGAAG 1 cut(s) 458
Eco88I CYCGRG 1 cut(s) 556
EcoO109I RGGNCCY 1 cut(s) 859
EcoRII CCWGG 2 cut(s) 70, 739
EcoT14I CCWWGG 1 cut(s) 354
EcoT38I GRGCYC 1 cut(s) 621
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 3 cut(s) 358, 529, 625
FalI AAGNNNNNCTT 2 cut(s) 456, 488
FaqI GGGAC 2 cut(s) 610, 724
FatI CATG 3 cut(s) 354, 525, 621
FauI CCCGC 1 cut(s) 682
FauNDI CATATG 1 cut(s) 959
FblI GTMKAC 1 cut(s) 448
Fnu4HI GCNGC 5 cut(s) 216, 339, 468, 516, 551
FokI GGATG 1 cut(s) 154
FriOI GRGCYC 1 cut(s) 621
Fsp4HI GCNGC 5 cut(s) 216, 339, 468, 516, 551
FspBI CTAG 2 cut(s) 660, 702
GlaI GCGC 1 cut(s) 115
GluI GCNGC 5 cut(s) 216, 339, 468, 516, 551
GsaI CCCAGC 1 cut(s) 345
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 3 cut(s) 92, 204, 437
HhaI GCGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 3 cut(s) 358, 529, 625
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HinfI GANTC 2 cut(s) 179, 736
HphI GGTGA 1 cut(s) 343
Hpy166II GTNNAC 2 cut(s) 449, 873
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 7 cut(s) 183, 418, 509, 558, 580, 751, 857
Hpy8I GTNNAC 2 cut(s) 449, 873
HpyAV CCTTC 1 cut(s) 387
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 7 cut(s) 54, 215, 266, 365, 631, 653, 668
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 371
HpyF3I CTNAG 2 cut(s) 110, 482
HpySE526I ACGT 1 cut(s) 60
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 3 cut(s) 358, 529, 625
HspAI GCGC 1 cut(s) 114
Kzo9I GATC 1 cut(s) 289
LguI GCTCTTC 1 cut(s) 477
LmnI GCTCC 1 cut(s) 38
Lsp1109I GCAGC 5 cut(s) 227, 325, 479, 527, 562
LweI GCATC 3 cut(s) 423, 487, 676
MaeI CTAG 2 cut(s) 660, 702
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 2 cut(s) 56, 880
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 7 cut(s) 17, 206, 464, 595, 695, 792, 917
MfeI CAATTG 2 cut(s) 246, 720
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 2 cut(s) 621, 762
MlsI TGGCCA 1 cut(s) 437
MluNI TGGCCA 1 cut(s) 437
MmeI TCCRAC 2 cut(s) 589, 757
MnlI CCTC 9 cut(s) 68, 94, 97, 181, 245, 299, 479, 871, 872
Mox20I TGGCCA 1 cut(s) 437
MroXI GAANNNNTTC 1 cut(s) 397
MscI TGGCCA 1 cut(s) 437
MseI TTAA 2 cut(s) 764, 936
MslI CAYNNNNRTG 1 cut(s) 639
Msp20I TGGCCA 1 cut(s) 437
MspA1I CMGCKG 1 cut(s) 518
MspR9I CCNGG 2 cut(s) 72, 741
MunI CAATTG 2 cut(s) 246, 720
Mva1269I GAATGC 2 cut(s) 499, 845
MvaI CCWGG 2 cut(s) 72, 741
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 2 cut(s) 122, 371
NcoI CCATGG 1 cut(s) 354
NdeI CATATG 1 cut(s) 959
NdeII GATC 1 cut(s) 289
NlaIII CATG 3 cut(s) 358, 529, 625
NlaIV GGNNCC 2 cut(s) 136, 646
NmeAIII GCCGAG 1 cut(s) 68
NmuCI GTSAC 2 cut(s) 56, 880
NruI TCGCGA 1 cut(s) 419
PciSI GCTCTTC 1 cut(s) 477
PctI GAATGC 2 cut(s) 499, 845
PdmI GAANNNNTTC 1 cut(s) 397
PfeI GAWTC 2 cut(s) 179, 736
PfoI TCCNGGA 1 cut(s) 70
PkrI GCNGC 5 cut(s) 217, 340, 469, 517, 552
PpuMI RGGWCCY 1 cut(s) 859
PshAI GACNNNNGTC 1 cut(s) 878
Psp5II RGGWCCY 1 cut(s) 859
Psp6I CCWGG 2 cut(s) 70, 739
PspFI CCCAGC 1 cut(s) 341
PspGI CCWGG 2 cut(s) 70, 739
PspN4I GGNNCC 2 cut(s) 136, 646
PspPI GGNCC 2 cut(s) 202, 859
PspPPI RGGWCCY 1 cut(s) 859
PsuI RGATCY 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 518
RruI TCGCGA 1 cut(s) 419
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
RseI CAYNNNNRTG 1 cut(s) 639
SapI GCTCTTC 1 cut(s) 477
SaqAI TTAA 2 cut(s) 764, 936
SatI GCNGC 5 cut(s) 216, 339, 468, 516, 551
Sau3AI GATC 1 cut(s) 289
Sau96I GGNCC 2 cut(s) 202, 859
ScrFI CCNGG 2 cut(s) 72, 741
SduI GDGCHC 2 cut(s) 621, 762
SfaNI GCATC 3 cut(s) 423, 487, 676
SfcI CTRYAG 1 cut(s) 156
SinI GGWCC 1 cut(s) 859
SmiMI CAYNNNNRTG 1 cut(s) 639
SmlI CTYRAG 3 cut(s) 507, 751, 820
SmoI CTYRAG 3 cut(s) 507, 751, 820
SpeI ACTAGT 1 cut(s) 701
SsiI CCGC 1 cut(s) 689
SspMI CTAG 2 cut(s) 660, 702
StyD4I CCNGG 2 cut(s) 70, 739
StyI CCWWGG 1 cut(s) 354
TaiI ACGT 1 cut(s) 63
TfiI GAWTC 2 cut(s) 179, 736
Tru1I TTAA 2 cut(s) 764, 936
Tru9I TTAA 2 cut(s) 764, 936
TscAI CASTG 2 cut(s) 61, 340
TseFI GTSAC 2 cut(s) 56, 880
TseI GCWGC 5 cut(s) 215, 338, 467, 515, 550
Tsp45I GTSAC 2 cut(s) 56, 880
TspDTI ATGAA 3 cut(s) 156, 390, 889
TspGWI ACGGA 2 cut(s) 302, 890
TspRI CASTG 2 cut(s) 61, 340
VpaK11BI GGWCC 1 cut(s) 859
XapI RAATTY 1 cut(s) 186
XcmI CCANNNNNNNNNTGG 1 cut(s) 947
XmiI GTMKAC 1 cut(s) 448
XmnI GAANNNNTTC 1 cut(s) 397
XspI CTAG 2 cut(s) 660, 702
ZraI GACGTC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.