Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000401

Physical Location & Seq

Genomic Coordinates Forward (+)

40197133 .. 40198089

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00359890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGAAGAAGGGCTACTAACTCTGTCAGGGTCAAAGGCCAACATCAATGGAGCTTCAGGTGATTGCGGTGACATCATAAACCCGAGTGGGTCCTCCTCCTCAGCCACCCTTGTTGTGGTTCTGAGCACATTGGTGGCTCTCTCTGGTTCCTTCGGCTATGGCTGTGCTATGGGATATTCATCCTCTGCTGAATCAGGAATTCTGGAAGACTTGGGCCTTACTGTTGCAGCATACTCCGTTTTTGGTTCAACAATGACGGTTGGAGGAATAATTGGTGCACTAGTAAATGGGAAGATAACCAATCTCATTGGTCGTAGAGGTGTAAGTTTTTGCATTAGTCTTTATACACGGGCTGCTGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

121

Amino Acids

12.02

Weight (kDa)

4.49

Isoelectric Point (pI)

25.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca	FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica	MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis	pycom12g21050 pycom12g21080
rosa_chinensis	RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata	RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora	Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii	Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa	Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha	Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana	Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	198
AcuI	CTGAAG	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	249
AhlI	ACTAGT	1 cut(s)	280
AleI	CACNNNNGTG	1 cut(s)	131
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Alw21I	GWGCWC	2 cut(s)	128, 280
Alw44I	GTGCAC	1 cut(s)	276
Ama87I	CYCGRG	1 cut(s)	82
AoxI	GGCC	2 cut(s)	36, 214
ApaLI	GTGCAC	1 cut(s)	276
ApeKI	GCWGC	2 cut(s)	227, 353
ApoI	RAATTY	1 cut(s)	198
AspS9I	GGNCC	2 cut(s)	90, 214
AsuHPI	GGTGA	2 cut(s)	71, 80
AvaI	CYCGRG	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	90
BaeGI	GKGCMC	1 cut(s)	280
BarI	GAAGNNNNNNTAC	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	2 cut(s)	128, 280
BbvCI	CCTCAGC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	239, 340
BcuI	ACTAGT	1 cut(s)	280
BfaI	CTAG	1 cut(s)	281
BisI	GCNGC	2 cut(s)	228, 354
BlsI	GCNGC	2 cut(s)	229, 355
Bme18I	GGWCC	1 cut(s)	90
BmeT110I	CYCGRG	1 cut(s)	82
BmgT120I	GGNCC	2 cut(s)	90, 214
BmiI	GGNNCC	2 cut(s)	91, 148
BpiI	GAAGAC	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	100
BsaBI	GATNNNNATC	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse8I	GATNNNNATC	1 cut(s)	178
BseGI	GGATG	1 cut(s)	179
BseJI	GATNNNNATC	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	2 cut(s)	113, 114
BseRI	GAGGAG	2 cut(s)	85, 88
BseSI	GKGCMC	1 cut(s)	280
BseXI	GCAGC	2 cut(s)	239, 340
BshFI	GGCC	2 cut(s)	38, 216
BsiHKAI	GWGCWC	2 cut(s)	128, 280
BsiHKCI	CYCGRG	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	115
BsnI	GGCC	2 cut(s)	38, 216
BsoBI	CYCGRG	1 cut(s)	82
Bsp1286I	GDGCHC	2 cut(s)	128, 280
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	2 cut(s)	38, 216
BspCNI	CTCAG	2 cut(s)	113, 114
BspLI	GGNNCC	2 cut(s)	91, 148
Bst4CI	ACNGT	2 cut(s)	223, 259
BstDEI	CTNAG	2 cut(s)	100, 122
BstF5I	GGATG	1 cut(s)	179
BstSLI	GKGCMC	1 cut(s)	280
BstV1I	GCAGC	2 cut(s)	239, 340
BstV2I	GAAGAC	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	38, 216
BtsCI	GGATG	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	90, 214
CspCI	CAANNNNNGTGG	2 cut(s)	94, 129
CviJI	RGCY	9 cut(s)	13, 38, 53, 104, 137, 156, 162, 216, 353
CviKI_1	RGCY	9 cut(s)	13, 38, 53, 104, 137, 156, 162, 216, 353
DdeI	CTNAG	2 cut(s)	100, 122
Eco47I	GGWCC	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	39
Eco88I	CYCGRG	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	90
EcoRI	GAATTC	1 cut(s)	198
FaiI	YATR	5 cut(s)	77, 159, 170, 232, 345
Fnu4HI	GCNGC	2 cut(s)	228, 354
FokI	GGATG	1 cut(s)	166
Fsp4HI	GCNGC	2 cut(s)	228, 354
FspBI	CTAG	1 cut(s)	281
GluI	GCNGC	2 cut(s)	228, 354
HaeIII	GGCC	2 cut(s)	38, 216
HinfI	GANTC	1 cut(s)	191
HphI	GGTGA	2 cut(s)	71, 80
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	2 cut(s)	195, 203
Hpy8I	GTNNAC	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	2 cut(s)	223, 259
HpyCH4V	TGCA	3 cut(s)	227, 278, 333
HpyF3I	CTNAG	2 cut(s)	100, 122
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	5 cut(s)	12, 42, 129, 180, 188
Lsp1109I	GCAGC	2 cut(s)	239, 340
MaeI	CTAG	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	68
MboII	GAAGA	3 cut(s)	17, 218, 304
MhlI	GDGCHC	2 cut(s)	128, 280
MluCI	AATT	2 cut(s)	198, 270
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	6 cut(s)	103, 106, 109, 193, 257, 311
MslI	CAYNNNNRTG	1 cut(s)	131
NlaIV	GGNNCC	2 cut(s)	91, 148
NmuCI	GTSAC	1 cut(s)	68
OliI	CACNNNNGTG	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	229, 355
PpuMI	RGGWCCY	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	91, 148
PspPI	GGNCC	2 cut(s)	90, 214
PspPPI	RGGWCCY	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	131
SatI	GCNGC	2 cut(s)	228, 354
Sau96I	GGNCC	2 cut(s)	90, 214
SduI	GDGCHC	2 cut(s)	128, 280
SetI	ASST	3 cut(s)	55, 61, 322
SinI	GGWCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	131
SpeI	ACTAGT	1 cut(s)	280
Sse9I	AATT	2 cut(s)	198, 270
SsiI	CCGC	1 cut(s)	66
SspMI	CTAG	1 cut(s)	281
TaaI	ACNGT	2 cut(s)	223, 259
TasI	AATT	2 cut(s)	198, 270
TfiI	GAWTC	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	2 cut(s)	227, 353
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	1 cut(s)	168
TspGWI	ACGGA	1 cut(s)	226
VneI	GTGCAC	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	90
XapI	RAATTY	1 cut(s)	198
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.