Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000401

Physical Location & Seq

Genomic Coordinates Forward (+)

50707450 .. 50709529

Gene Structure 2080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00430570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGACATAGAAGCCATGGAAGAAGGGCTACTAGCTCTATCAGGGTCAGAGTCCAATATCAATCGAACTTCAGGTGATTGCAGTGACGTCATAACTCGAAGTCGGTCCTCTTCCTCAACCACCCCTGTTGTAGTTCTGAGCACATTGGTCGCTCTCTGTGGTTCCTTTGGCTATGGCTGTGCTGCAGGATATTCATCATCAGCTGAATCAGGAATTGTGGAAGACTTGGGCCTTACTGTTGCAGCATGTGTTATAGTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

87

Amino Acids

8.77

Weight (kDa)

4.05

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca	FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica	MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis	pycom12g21050 pycom12g21080
rosa_chinensis	RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata	RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora	Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii	Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa	Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha	Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana	Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	54
AcyI	GRCGYC	1 cut(s)	87
AluBI	AGCT	2 cut(s)	35, 203
AluI	AGCT	2 cut(s)	35, 203
Alw21I	GWGCWC	1 cut(s)	143
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	2 cut(s)	182, 242
AspS9I	GGNCC	2 cut(s)	105, 229
AsuHPI	GGTGA	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	105
BarI	GAAGNNNNNNTAC	2 cut(s)	12, 44
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	169, 254
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	183
BisI	GCNGC	2 cut(s)	183, 243
BlsI	GCNGC	2 cut(s)	184, 244
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	2 cut(s)	105, 229
BmiI	GGNNCC	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	193
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	15
Bse8I	GATNNNNATC	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	15
BseJI	GATNNNNATC	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	128
BseXI	GCAGC	2 cut(s)	169, 254
BshFI	GGCC	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp19I	CCATGG	1 cut(s)	15
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	163
BspMAI	CTGCAG	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	15
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	115
BstACI	GRCGYC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	137
BstDSI	CCRYGG	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	249
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	169, 254
BstV2I	GAAGAC	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	15
BtsI	GCAGTG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	88
Cfr13I	GGNCC	2 cut(s)	105, 229
CspCI	CAANNNNNGTGG	2 cut(s)	109, 144
CviAII	CATG	2 cut(s)	16, 246
CviJI	RGCY	7 cut(s)	14, 28, 35, 171, 177, 203, 231
CviKI_1	RGCY	7 cut(s)	14, 28, 35, 171, 177, 203, 231
DdeI	CTNAG	1 cut(s)	137
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	2 cut(s)	19, 249
FaiI	YATR	6 cut(s)	8, 17, 92, 174, 247, 254
FatI	CATG	2 cut(s)	15, 245
Fnu4HI	GCNGC	2 cut(s)	183, 243
Fsp4HI	GCNGC	2 cut(s)	183, 243
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	2 cut(s)	183, 243
HaeIII	GGCC	1 cut(s)	231
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	19, 249
HinfI	GANTC	2 cut(s)	50, 206
HphI	GGTGA	1 cut(s)	86
Hpy188I	TCNGA	2 cut(s)	49, 138
Hpy188III	TCNNGA	1 cut(s)	210
HpyAV	CCTTC	1 cut(s)	17
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	3 cut(s)	81, 185, 242
HpyF3I	CTNAG	1 cut(s)	137
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	19, 249
LpnPI	CCDG	5 cut(s)	27, 57, 138, 171, 195
Lsp1109I	GCAGC	2 cut(s)	169, 254
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	83
MboII	GAAGA	3 cut(s)	32, 102, 233
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	1 cut(s)	213
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	2 cut(s)	118, 124
MspA1I	CMGCKG	1 cut(s)	203
NcoI	CCATGG	1 cut(s)	15
NlaIII	CATG	2 cut(s)	19, 249
NlaIV	GGNNCC	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	83
NspI	RCATGY	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	2 cut(s)	184, 244
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	2 cut(s)	105, 229
PstI	CTGCAG	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	203
SatI	GCNGC	2 cut(s)	183, 243
Sau96I	GGNCC	2 cut(s)	105, 229
SchI	GAGTC	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	4 cut(s)	37, 76, 90, 205
SfcI	CTRYAG	1 cut(s)	183
SinI	GGWCC	1 cut(s)	105
Sse9I	AATT	1 cut(s)	213
SspMI	CTAG	1 cut(s)	32
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	2 cut(s)	64, 97
TaqII	GACCGA	1 cut(s)	93
TasI	AATT	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	206
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	2 cut(s)	182, 242
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	105
XceI	RCATGY	1 cut(s)	249
XspI	CTAG	1 cut(s)	32
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.