RchiOBHm_Chr3g0453601
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000401
Physical Location & Seq
Forward (+)
4005627 .. 4008360
2734 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42068

Sequence Viewer

Length: 1053 bp
ATGCAGAATGCTTGGTGGCTTGATTTAGGACGGTTGTCAGTGGGATTCGGCGTTGGTCTAATTTGCTACGTGGTACCTGTATACATAGCAGAAATAACACCCAAGGATCTTAGAGGAAGATTTACTTCAGCTACTCAGTTGATGTGTAGTTGCGGCTTAGCACTAGCCTTTTTCCTTGGAAATGTCATAACCTGGCGGACCTTGGCGGTTATCGGTGCCATTCCATCTCTTGTACACATTATAGGCCTATTTTTTATTCCAGAGTCTCCAAGGTGGCTGGCCAAAATTGGTAGGCACAAGGAATTTGAAGCGGCTCTTCAGCGACTGAGAGGAAAGCATGCCGACATATCTCAAGAAGCAGCTGAAATAATGCATTATACAGAAATGTTTCAGCAGCAGTCAGAAAAAGTTCTAGACTTGTTCCAAAAGAGATATGCTTACTCACTCATTGTTGGAGTTGGGCTCTTGTCACTGCAACCATTTGTGGGTGCCAATGCAGTATCATATTATGCAAGTTCTATATTTGTAGATGCAGGTTTTTCAAGTACCATTGGGACTATATCATTGTCTCTCATTGGGATTCCTGGTGTTGCGTTGAGTGTGCTCTTAACAGACAAAGTTGGAAGACGACCACTTCTACTGATTTCTGCTGGCGGATTGTGCTTGAGTACCCTTCTTGTGGGTTTGGCATTCTTCTTTCAGGACATCAACTTCTGGAAGGAGCTCACTCCTATTTTGGTCTACATCGGCTTATTGGGTCAAAGTCTATCATACACAACAGGCATGGCAGGATTACCCTGGGTAATTATGTCAGAGATATTCCCCATAAACGTTAAAGGTACAGCTGGAAGCCTGTTGAGTTTGGTGAATTGGTCCTGTTCTTGGATAGTAACATACACCATCAATTTCATGATGGAATGGAGCTCAGAAGGAACATTTTTCTTCTTCTCAGCCATTTCCGGCTTCACAGTTCTGTTCGTAGCAAAGCTAGTGCCAGAGACCAGGGGGCGAACCCTAGAAGAAATACAAGCATCAATGGCCCATTTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

350

Amino Acids

38.53

Weight (kDa)

7.65

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 3 - 290 1.5e-17 Major Facilitator Superfamily
Sugar_tr PF00083 4 - 344 5.7e-73 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 524
Acc65I GGTACC 1 cut(s) 73
AccB1I GGYRCC 3 cut(s) 73, 215, 488
AccI GTMKAC 2 cut(s) 81, 741
AciI CCGC 5 cut(s) 153, 196, 206, 311, 654
AclI AACGTT 1 cut(s) 831
AclWI GGATC 1 cut(s) 114
AcoI YGGCCR 1 cut(s) 279
AcsI RAATTY 1 cut(s) 302
AcuI CTGAAG 2 cut(s) 111, 302
AfaI GTAC 5 cut(s) 75, 234, 547, 670, 841
AfiI CCNNNNNNNGG 3 cut(s) 485, 679, 882
AgsI TTSAA 2 cut(s) 308, 543
AjnI CCWGG 4 cut(s) 191, 583, 797, 1001
AluBI AGCT 6 cut(s) 131, 362, 724, 845, 924, 988
AluI AGCT 6 cut(s) 131, 362, 724, 845, 924, 988
Alw21I GWGCWC 3 cut(s) 606, 726, 926
Alw26I GTCTC 3 cut(s) 270, 573, 992
AlwI GGATC 1 cut(s) 114
AlwNI CAGNNNCTG 1 cut(s) 325
AoxI GGCC 3 cut(s) 244, 279, 1038
ApeKI GCWGC 2 cut(s) 359, 394
ApoI RAATTY 1 cut(s) 302
Asp700I GAANNNNTTC 2 cut(s) 387, 408
Asp718I GGTACC 1 cut(s) 73
AspS9I GGNCC 3 cut(s) 198, 873, 1039
AsuHPI GGTGA 1 cut(s) 877
AvaII GGWCC 2 cut(s) 198, 873
BalI TGGCCA 1 cut(s) 281
BanI GGYRCC 3 cut(s) 73, 215, 488
BanII GRGCYC 3 cut(s) 465, 726, 926
BbsI GAAGAC 1 cut(s) 631
Bbv12I GWGCWC 3 cut(s) 606, 726, 926
BbvI GCAGC 2 cut(s) 371, 406
BccI CCATC 3 cut(s) 232, 907, 908
BciT130I CCWGG 4 cut(s) 193, 585, 799, 1003
BcoDI GTCTC 3 cut(s) 270, 573, 992
BfaI CTAG 4 cut(s) 164, 413, 989, 1016
BfuAI ACCTGC 1 cut(s) 524
BisI GCNGC 4 cut(s) 154, 312, 360, 395
BlpI GCTNAGC 1 cut(s) 157
BlsI GCNGC 4 cut(s) 155, 313, 361, 396
Bme1390I CCNGG 4 cut(s) 193, 585, 799, 1003
Bme18I GGWCC 2 cut(s) 198, 873
BmgT120I GGNCC 3 cut(s) 198, 873, 1039
BmiI GGNNCC 3 cut(s) 75, 217, 490
BmrFI CCNGG 4 cut(s) 193, 585, 799, 1003
BmsI GCATC 2 cut(s) 520, 1040
BoxI GACNNNNGTC 1 cut(s) 34
BpiI GAAGAC 1 cut(s) 631
BplI GAGNNNNNCTC 2 cut(s) 447, 479
Bpu1102I GCTNAGC 1 cut(s) 157
BpuEI CTTGAG 2 cut(s) 336, 685
BsaAI YACGTR 1 cut(s) 70
BsaI GGTCTC 1 cut(s) 992
BsaJI CCNNGG 7 cut(s) 102, 175, 201, 269, 797, 798, 1002
Bsc4I CCNNNNNNNGG 3 cut(s) 485, 679, 882
BseBI CCWGG 4 cut(s) 193, 585, 799, 1003
BseDI CCNNGG 7 cut(s) 102, 175, 201, 269, 797, 798, 1002
BseLI CCNNNNNNNGG 3 cut(s) 485, 679, 882
BseMII CTCAG 4 cut(s) 149, 317, 939, 963
BseXI GCAGC 2 cut(s) 371, 406
BshFI GGCC 3 cut(s) 246, 281, 1040
BshNI GGYRCC 3 cut(s) 73, 215, 488
BsiHKAI GWGCWC 3 cut(s) 606, 726, 926
BsiSI CCGG 1 cut(s) 960
BslFI GGGAC 1 cut(s) 568
BslI CCNNNNNNNGG 3 cut(s) 485, 679, 882
BsmAI GTCTC 3 cut(s) 270, 573, 992
BsmFI GGGAC 1 cut(s) 568
BsmI GAATGC 2 cut(s) 13, 689
BsnI GGCC 3 cut(s) 246, 281, 1040
Bso31I GGTCTC 1 cut(s) 992
Bsp1286I GDGCHC 4 cut(s) 465, 606, 726, 926
Bsp1407I TGTACA 1 cut(s) 232
Bsp143I GATC 1 cut(s) 106
Bsp1720I GCTNAGC 1 cut(s) 157
BspACI CCGC 5 cut(s) 153, 196, 206, 311, 654
BspANI GGCC 3 cut(s) 246, 281, 1040
BspCNI CTCAG 4 cut(s) 148, 318, 938, 962
BspHI TCATGA 1 cut(s) 909
BspLI GGNNCC 3 cut(s) 75, 217, 490
BspMI ACCTGC 1 cut(s) 524
BspPI GGATC 1 cut(s) 114
BspQI GCTCTTC 1 cut(s) 321
BspT107I GGYRCC 3 cut(s) 73, 215, 488
BspTNI GGTCTC 1 cut(s) 992
BsrGI TGTACA 1 cut(s) 232
BssECI CCNNGG 7 cut(s) 102, 175, 201, 269, 797, 798, 1002
BssMI GATC 1 cut(s) 106
BssNAI GTATAC 1 cut(s) 82
BssT1I CCWWGG 4 cut(s) 102, 175, 201, 269
Bst1107I GTATAC 1 cut(s) 82
Bst2UI CCWGG 4 cut(s) 193, 585, 799, 1003
Bst4CI ACNGT 2 cut(s) 33, 970
Bst6I CTCTTC 1 cut(s) 321
BstAUI TGTACA 1 cut(s) 232
BstBAI YACGTR 1 cut(s) 70
BstC8I GCNNGC 3 cut(s) 279, 339, 652
BstDEI CTNAG 6 cut(s) 110, 135, 157, 326, 925, 949
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 3 cut(s) 270, 573, 992
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 2 cut(s) 660, 1037
BstNI CCWGG 4 cut(s) 193, 585, 799, 1003
BstNSI RCATGY 1 cut(s) 341
BstPAI GACNNNNGTC 1 cut(s) 34
BstSCI CCNGG 4 cut(s) 191, 583, 797, 1001
BstV1I GCAGC 2 cut(s) 371, 406
BstV2I GAAGAC 1 cut(s) 631
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BstZ17I GTATAC 1 cut(s) 82
BsuRI GGCC 3 cut(s) 246, 281, 1040
BtsI GCAGTG 1 cut(s) 470
BtsIMutI CAGTG 2 cut(s) 45, 470
BveI ACCTGC 1 cut(s) 524
Cac8I GCNNGC 3 cut(s) 279, 339, 652
CaiI CAGNNNCTG 1 cut(s) 325
CciI TCATGA 1 cut(s) 909
Cfr13I GGNCC 3 cut(s) 198, 873, 1039
Csp6I GTAC 5 cut(s) 74, 233, 546, 669, 840
CviAII CATG 3 cut(s) 338, 784, 910
CviQI GTAC 5 cut(s) 74, 233, 546, 669, 840
DdeI CTNAG 6 cut(s) 110, 135, 157, 326, 925, 949
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
EciI GGCGGA 2 cut(s) 211, 669
Ecl136II GAGCTC 2 cut(s) 724, 924
Eco130I CCWWGG 4 cut(s) 102, 175, 201, 269
Eco147I AGGCCT 1 cut(s) 246
Eco24I GRGCYC 3 cut(s) 465, 726, 926
Eco31I GGTCTC 1 cut(s) 992
Eco47I GGWCC 2 cut(s) 198, 873
Eco53kI GAGCTC 2 cut(s) 724, 924
Eco57I CTGAAG 2 cut(s) 111, 302
EcoICRI GAGCTC 2 cut(s) 724, 924
EcoRII CCWGG 4 cut(s) 191, 583, 797, 1001
EcoT14I CCWWGG 4 cut(s) 102, 175, 201, 269
EcoT22I ATGCAT 1 cut(s) 375
EcoT38I GRGCYC 3 cut(s) 465, 726, 926
ErhI CCWWGG 4 cut(s) 102, 175, 201, 269
FaeI CATG 3 cut(s) 341, 787, 913
FalI AAGNNNNNCTT 4 cut(s) 109, 141, 300, 332
FaqI GGGAC 1 cut(s) 568
FatI CATG 3 cut(s) 337, 783, 909
FblI GTMKAC 2 cut(s) 81, 741
Fnu4HI GCNGC 4 cut(s) 154, 312, 360, 395
FriOI GRGCYC 3 cut(s) 465, 726, 926
Fsp4HI GCNGC 4 cut(s) 154, 312, 360, 395
FspBI CTAG 4 cut(s) 164, 413, 989, 1016
GluI GCNGC 4 cut(s) 154, 312, 360, 395
HaeIII GGCC 3 cut(s) 246, 281, 1040
HapII CCGG 1 cut(s) 960
Hin1II CATG 3 cut(s) 341, 787, 913
HinfI GANTC 3 cut(s) 45, 263, 580
HpaII CCGG 1 cut(s) 960
HphI GGTGA 1 cut(s) 877
Hpy166II GTNNAC 3 cut(s) 82, 235, 742
Hpy188I TCNGA 4 cut(s) 403, 814, 928, 1052
Hpy188III TCNNGA 6 cut(s) 260, 353, 413, 701, 715, 910
Hpy8I GTNNAC 3 cut(s) 82, 235, 742
HpyAV CCTTC 3 cut(s) 683, 712, 923
HpyCH4III ACNGT 2 cut(s) 33, 970
HpyCH4IV ACGT 2 cut(s) 69, 831
HpyCH4V TGCA 6 cut(s) 4, 373, 475, 497, 512, 533
HpyF10VI GCNNNNNNNGC 2 cut(s) 660, 1037
HpyF3I CTNAG 6 cut(s) 110, 135, 157, 326, 925, 949
HpySE526I ACGT 2 cut(s) 69, 831
Hsp92II CATG 3 cut(s) 341, 787, 913
KpnI GGTACC 1 cut(s) 77
Kzo9I GATC 1 cut(s) 106
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 2 cut(s) 721, 921
Lsp1109I GCAGC 2 cut(s) 371, 406
LweI GCATC 2 cut(s) 520, 1040
MaeI CTAG 4 cut(s) 164, 413, 989, 1016
MaeII ACGT 2 cut(s) 69, 831
MaeIII GTNAC 2 cut(s) 468, 889
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 7 cut(s) 129, 308, 636, 685, 934, 937, 1031
MflI RGATCY 1 cut(s) 106
MhlI GDGCHC 4 cut(s) 465, 606, 726, 926
MlsI TGGCCA 1 cut(s) 281
MluCI AATT 6 cut(s) 60, 285, 302, 804, 868, 904
MluNI TGGCCA 1 cut(s) 281
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 2 cut(s) 433, 601
MnlI CCTC 2 cut(s) 107, 323
Mox20I TGGCCA 1 cut(s) 281
Mph1103I ATGCAT 1 cut(s) 375
MroXI GAANNNNTTC 2 cut(s) 387, 408
MscI TGGCCA 1 cut(s) 281
MseI TTAA 2 cut(s) 608, 834
Msp20I TGGCCA 1 cut(s) 281
MspA1I CMGCKG 2 cut(s) 362, 845
MspI CCGG 1 cut(s) 960
MspR9I CCNGG 4 cut(s) 193, 585, 799, 1003
Mva1269I GAATGC 2 cut(s) 13, 689
MvaI CCWGG 4 cut(s) 193, 585, 799, 1003
MwoI GCNNNNNNNGC 2 cut(s) 660, 1037
NdeII GATC 1 cut(s) 106
NlaIII CATG 3 cut(s) 341, 787, 913
NlaIV GGNNCC 3 cut(s) 75, 217, 490
NmuCI GTSAC 1 cut(s) 468
NsiI ATGCAT 1 cut(s) 375
NspI RCATGY 1 cut(s) 341
PaeI GCATGC 1 cut(s) 341
PagI TCATGA 1 cut(s) 909
PasI CCCWGGG 1 cut(s) 798
PceI AGGCCT 1 cut(s) 246
PciSI GCTCTTC 1 cut(s) 321
PctI GAATGC 2 cut(s) 13, 689
PdmI GAANNNNTTC 2 cut(s) 387, 408
PfeI GAWTC 2 cut(s) 45, 580
PkrI GCNGC 4 cut(s) 155, 313, 361, 396
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
Ppu21I YACGTR 1 cut(s) 70
PshAI GACNNNNGTC 1 cut(s) 34
Psp124BI GAGCTC 2 cut(s) 726, 926
Psp1406I AACGTT 1 cut(s) 831
Psp6I CCWGG 4 cut(s) 191, 583, 797, 1001
PspGI CCWGG 4 cut(s) 191, 583, 797, 1001
PspN4I GGNNCC 3 cut(s) 75, 217, 490
PspPI GGNCC 3 cut(s) 198, 873, 1039
PstNI CAGNNNCTG 1 cut(s) 325
PsuI RGATCY 1 cut(s) 106
PvuII CAGCTG 2 cut(s) 362, 845
RsaI GTAC 5 cut(s) 75, 234, 547, 670, 841
RsaNI GTAC 5 cut(s) 74, 233, 546, 669, 840
SacI GAGCTC 2 cut(s) 726, 926
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 2 cut(s) 608, 834
SatI GCNGC 4 cut(s) 154, 312, 360, 395
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 3 cut(s) 198, 873, 1039
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 4 cut(s) 193, 585, 799, 1003
SduI GDGCHC 4 cut(s) 465, 606, 726, 926
SfaNI GCATC 2 cut(s) 520, 1040
SinI GGWCC 2 cut(s) 198, 873
SmlI CTYRAG 2 cut(s) 351, 664
SmoI CTYRAG 2 cut(s) 351, 664
SphI GCATGC 1 cut(s) 341
Sse9I AATT 6 cut(s) 60, 285, 302, 804, 868, 904
SseBI AGGCCT 1 cut(s) 246
SsiI CCGC 5 cut(s) 153, 196, 206, 311, 654
SspMI CTAG 4 cut(s) 164, 413, 989, 1016
SstI GAGCTC 2 cut(s) 726, 926
StuI AGGCCT 1 cut(s) 246
StyD4I CCNGG 4 cut(s) 191, 583, 797, 1001
StyI CCWWGG 4 cut(s) 102, 175, 201, 269
TaaI ACNGT 2 cut(s) 33, 970
TaiI ACGT 2 cut(s) 72, 834
TasI AATT 6 cut(s) 60, 285, 302, 804, 868, 904
TatI WGTACW 1 cut(s) 232
TauI GCSGC 2 cut(s) 156, 314
TfiI GAWTC 2 cut(s) 45, 580
Tru1I TTAA 2 cut(s) 608, 834
Tru9I TTAA 2 cut(s) 608, 834
TscAI CASTG 2 cut(s) 45, 477
TseFI GTSAC 1 cut(s) 468
TseI GCWGC 2 cut(s) 359, 394
Tsp45I GTSAC 1 cut(s) 468
TspDTI ATGAA 1 cut(s) 898
TspRI CASTG 2 cut(s) 45, 477
VpaK11BI GGWCC 2 cut(s) 198, 873
XapI RAATTY 1 cut(s) 302
XbaI TCTAGA 1 cut(s) 412
XceI RCATGY 1 cut(s) 341
XmiI GTMKAC 2 cut(s) 81, 741
XmnI GAANNNNTTC 2 cut(s) 387, 408
XspI CTAG 4 cut(s) 164, 413, 989, 1016
Zsp2I ATGCAT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.