Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8451765.1

Orthogroup ID

OG0000401

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1132

Gene Structure 1132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8451765.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 484 bp

agaaaccatggaagaagggctactaactctgtcagggtcaaatggagcttcaagtgattgcagtgacgtcataactccaggagggttctcctcctcggccacccccgttgtcgttctgagcgcattggtggctctttgtggttcctttggctatggctgtgctgtaggatattcatcctctgctgaatcaggaattttggaagacttgggccttactattgcagcatactcactttttggttcaattttgacaattggaggaataattggtgcattagtaaatgggaagctaacggatctcattggtcgtagaggtacaatgtggttctcacaagtgttcagtgctgctgggtggctcaccatggcatttgcacaggtttcttctcttccccatcttcatgtacctctgatgatttcaagatgtactacatggtttaggaaaagatggatgttagttcaaggtcatagaagcagcttaggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

160

Amino Acids

16.67

Weight (kDa)

6.31

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca	FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica	MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis	pycom12g21050 pycom12g21080
rosa_chinensis	RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata	RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora	Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii	Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa	Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha	Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana	Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	70
AclWI	GGATC	1 cut(s)	304
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	193
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	3 cut(s)	317, 403, 425
AgsI	TTSAA	4 cut(s)	52, 244, 418, 459
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	3 cut(s)	48, 290, 475
AluI	AGCT	3 cut(s)	48, 290, 475
AlwI	GGATC	1 cut(s)	304
AoxI	GGCC	2 cut(s)	97, 209
ApeKI	GCWGC	3 cut(s)	222, 345, 472
ApoI	RAATTY	1 cut(s)	193
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	350
BarI	GAAGNNNNNNTAC	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	208
BbvI	GCAGC	2 cut(s)	234, 332
BccI	CCATC	2 cut(s)	400, 439
BciT130I	CCWGG	1 cut(s)	79
BfmI	CTRYAG	1 cut(s)	163
BisI	GCNGC	3 cut(s)	223, 346, 473
BlsI	GCNGC	3 cut(s)	224, 347, 474
Bme1390I	CCNGG	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	61
Bpu10I	CCTNAGC	1 cut(s)	476
BsaBI	GATNNNNATC	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	3 cut(s)	7, 94, 361
Bse8I	GATNNNNATC	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	3 cut(s)	7, 94, 361
BseGI	GGATG	2 cut(s)	174, 454
BseJI	GATNNNNATC	1 cut(s)	173
BseMII	CTCAG	1 cut(s)	108
BseRI	GAGGAG	2 cut(s)	80, 83
BseXI	GCAGC	2 cut(s)	234, 332
BseYI	CCCAGC	1 cut(s)	348
BshFI	GGCC	2 cut(s)	99, 211
BsnI	GGCC	2 cut(s)	99, 211
Bsp143I	GATC	1 cut(s)	296
Bsp19I	CCATGG	2 cut(s)	7, 361
BspANI	GGCC	2 cut(s)	99, 211
BspCNI	CTCAG	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	143
BspPI	GGATC	1 cut(s)	304
BssECI	CCNNGG	3 cut(s)	7, 94, 361
BssMI	GATC	1 cut(s)	296
BssNI	GRCGYC	1 cut(s)	67
BssT1I	CCWWGG	2 cut(s)	7, 361
Bst2UI	CCWGG	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	391
BstACI	GRCGYC	1 cut(s)	67
BstDEI	CTNAG	2 cut(s)	117, 476
BstDSI	CCRYGG	2 cut(s)	7, 361
BstF5I	GGATG	2 cut(s)	174, 454
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	1 cut(s)	299
BstMBI	GATC	1 cut(s)	296
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	77
BstSFI	CTRYAG	1 cut(s)	163
BstV1I	GCAGC	2 cut(s)	234, 332
BstV2I	GAAGAC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
BsuRI	GGCC	2 cut(s)	99, 211
BtgI	CCRYGG	2 cut(s)	7, 361
BtsCI	GGATG	2 cut(s)	174, 454
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	2 cut(s)	68, 347
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	209
Csp6I	GTAC	3 cut(s)	316, 402, 424
CspCI	CAANNNNNGTGG	2 cut(s)	89, 124
CviAII	CATG	4 cut(s)	8, 362, 399, 430
CviQI	GTAC	3 cut(s)	316, 402, 424
DdeI	CTNAG	2 cut(s)	117, 476
DpnI	GATC	1 cut(s)	298
DpnII	GATC	1 cut(s)	296
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
Eco130I	CCWWGG	2 cut(s)	7, 361
EcoRII	CCWGG	1 cut(s)	77
EcoT14I	CCWWGG	2 cut(s)	7, 361
ErhI	CCWWGG	2 cut(s)	7, 361
FaeI	CATG	4 cut(s)	11, 365, 402, 433
FaiI	YATR	8 cut(s)	9, 72, 154, 227, 363, 400, 431, 466
FatI	CATG	4 cut(s)	7, 361, 398, 429
Fnu4HI	GCNGC	3 cut(s)	223, 346, 473
FokI	GGATG	2 cut(s)	161, 461
Fsp4HI	GCNGC	3 cut(s)	223, 346, 473
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	3 cut(s)	223, 346, 473
GsaI	CCCAGC	1 cut(s)	352
GsuI	CTGGAG	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	99, 211
HhaI	GCGC	1 cut(s)	123
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	4 cut(s)	11, 365, 402, 433
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HinfI	GANTC	1 cut(s)	186
HphI	GGTGA	1 cut(s)	350
Hpy188I	TCNGA	2 cut(s)	118, 409
Hpy188III	TCNNGA	2 cut(s)	190, 418
HpyAV	CCTTC	1 cut(s)	9
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	4 cut(s)	61, 222, 273, 372
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	2 cut(s)	117, 476
HpySE526I	ACGT	1 cut(s)	67
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	4 cut(s)	11, 365, 402, 433
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	296
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	6 cut(s)	19, 64, 91, 175, 334, 360
Lsp1109I	GCAGC	2 cut(s)	234, 332
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	1 cut(s)	63
MalI	GATC	1 cut(s)	298
MboI	GATC	1 cut(s)	296
MboII	GAAGA	5 cut(s)	24, 213, 373, 378, 387
MfeI	CAATTG	1 cut(s)	253
MflI	RGATCY	1 cut(s)	296
MluCI	AATT	4 cut(s)	193, 244, 253, 265
MnlI	CCTC	7 cut(s)	75, 101, 104, 188, 252, 306, 415
MslI	CAYNNNNRTG	1 cut(s)	397
MspR9I	CCNGG	1 cut(s)	79
MunI	CAATTG	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	1 cut(s)	129
NcoI	CCATGG	2 cut(s)	7, 361
NdeII	GATC	1 cut(s)	296
NlaIII	CATG	4 cut(s)	11, 365, 402, 433
NlaIV	GGNNCC	1 cut(s)	143
NmeAIII	GCCGAG	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	186
PfoI	TCCNGGA	1 cut(s)	77
PkrI	GCNGC	3 cut(s)	224, 347, 474
Psp6I	CCWGG	1 cut(s)	77
PspFI	CCCAGC	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	296
RsaI	GTAC	3 cut(s)	317, 403, 425
RsaNI	GTAC	3 cut(s)	316, 402, 424
RseI	CAYNNNNRTG	1 cut(s)	397
SatI	GCNGC	3 cut(s)	223, 346, 473
Sau3AI	GATC	1 cut(s)	296
Sau96I	GGNCC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	79
SetI	ASST	8 cut(s)	50, 70, 292, 317, 379, 407, 464, 477
SfcI	CTRYAG	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	397
Sse9I	AATT	4 cut(s)	193, 244, 253, 265
StyD4I	CCNGG	1 cut(s)	77
StyI	CCWWGG	2 cut(s)	7, 361
TaiI	ACGT	1 cut(s)	70
TasI	AATT	4 cut(s)	193, 244, 253, 265
TatI	WGTACW	1 cut(s)	423
TfiI	GAWTC	1 cut(s)	186
TscAI	CASTG	2 cut(s)	68, 347
TseFI	GTSAC	1 cut(s)	63
TseI	GCWGC	3 cut(s)	222, 345, 472
Tsp45I	GTSAC	1 cut(s)	63
TspDTI	ATGAA	2 cut(s)	163, 387
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	2 cut(s)	68, 347
XapI	RAATTY	1 cut(s)	193
ZraI	GACGTC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.