Rroxscaffold_6G00430540
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000401
Physical Location & Seq
Forward (+)
50663794 .. 50667620
3827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00430540.1

Sequence Viewer

Length: 684 bp
ATGGATTATACAAAAACCTTTGAGCAGCACTCGGGAAAAGTCATAGACTTGTTCCAGAAGAGATATGCTCACTCACTAATTGTTGGAGTTGGGCTCATGTCCCTGCAACACTTTGGTGGTGCCAATGCAGTATCTGGTTATGCAAGTTCTATATTTGCAGAAGCAGGTTTTTCAACTAGTGTTGGGACTATATCAATTGCTCTTATTGGGATTCCTGGTGTTGCCTTGAGTGTGCTCTTAACAGACAAAGTTGGAAGACGACCACTTCTAATGGTTTCGGCTGGTGGATTGTGCTTGAGTTTGTTTCTTGTGGGATTGGCATTCTGCTTTCAGGACCTCAATCTGTGGAAGGAGGTCACCCCCAATTTGGTGTTCATCGGCTTGTTGGGTCAAAGTGTATCATACACAATAGGCGTAGCAGGATTACCCTGGGTTATTATGTCAGAGATATTCCCCATAAACGTTAAAGGTTCAGCTGGAAGCCTGTTGAGTTTGGTAAGTTGGTCCTCTGCTTGGATTGTAACATACACCTTCAATTTCATGATGGAATGGAGCTCAGCAAGCACATTTTTCTTCTTCTCAGCCTTTAGCGGGTTAACAGTTCTGTTCGTAGCAATGCTAGTGCCGGAAACTAAAGGGCGAACTCTAGAAGAAATGCAAGCATCAATTGCCCATTTTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

227

Amino Acids

24.45

Weight (kDa)

6.4

Isoelectric Point (pI)

26.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 11 - 220 5.2e-39 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 155
AccB1I GGYRCC 1 cut(s) 119
AciI CCGC 1 cut(s) 591
AclI AACGTT 1 cut(s) 462
AfiI CCNNNNNNNGG 3 cut(s) 367, 513, 591
AgsI TTSAA 2 cut(s) 174, 535
AhlI ACTAGT 1 cut(s) 176
AjnI CCWGG 2 cut(s) 214, 428
AjuI GAANNNNNNNTTGG 2 cut(s) 356, 388
AleI CACNNNNGTG 1 cut(s) 114
AluBI AGCT 2 cut(s) 476, 555
AluI AGCT 2 cut(s) 476, 555
Alw21I GWGCWC 2 cut(s) 237, 557
AlwNI CAGNNNCTG 1 cut(s) 134
Ama87I CYCGRG 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 25
AspS9I GGNCC 2 cut(s) 334, 504
AsuHPI GGTGA 1 cut(s) 349
AvaI CYCGRG 1 cut(s) 31
AvaII GGWCC 2 cut(s) 334, 504
BanI GGYRCC 1 cut(s) 119
BanII GRGCYC 2 cut(s) 96, 557
BbsI GAAGAC 1 cut(s) 262
Bbv12I GWGCWC 2 cut(s) 237, 557
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 538
BciT130I CCWGG 2 cut(s) 216, 430
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 3 cut(s) 177, 620, 647
BfuAI ACCTGC 1 cut(s) 155
BisI GCNGC 1 cut(s) 26
BlpI GCTNAGC 1 cut(s) 556
BlsI GCNGC 1 cut(s) 27
Bme1390I CCNGG 2 cut(s) 216, 430
Bme18I GGWCC 2 cut(s) 334, 504
BmeT110I CYCGRG 1 cut(s) 31
BmgT120I GGNCC 2 cut(s) 334, 504
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 2 cut(s) 216, 430
BmsI GCATC 1 cut(s) 671
BpiI GAAGAC 1 cut(s) 262
BplI GAGNNNNNCTC 6 cut(s) 14, 46, 52, 84, 78, 110
Bpu1102I GCTNAGC 1 cut(s) 556
BpuEI CTTGAG 2 cut(s) 247, 316
BsaJI CCNNGG 2 cut(s) 428, 429
Bsc4I CCNNNNNNNGG 3 cut(s) 367, 513, 591
Bse3DI GCAATG 1 cut(s) 621
BseBI CCWGG 2 cut(s) 216, 430
BseDI CCNNGG 2 cut(s) 428, 429
BseLI CCNNNNNNNGG 3 cut(s) 367, 513, 591
BseMI GCAATG 1 cut(s) 621
BseMII CTCAG 2 cut(s) 570, 594
BseXI GCAGC 1 cut(s) 37
BshNI GGYRCC 1 cut(s) 119
BsiHKAI GWGCWC 2 cut(s) 237, 557
BsiHKCI CYCGRG 1 cut(s) 31
BsiSI CCGG 1 cut(s) 626
BslFI GGGAC 2 cut(s) 85, 199
BslI CCNNNNNNNGG 3 cut(s) 367, 513, 591
BsmFI GGGAC 2 cut(s) 85, 199
BsmI GAATGC 1 cut(s) 320
BsoBI CYCGRG 1 cut(s) 31
Bsp1286I GDGCHC 3 cut(s) 96, 237, 557
Bsp1720I GCTNAGC 1 cut(s) 556
BspACI CCGC 1 cut(s) 591
BspCNI CTCAG 2 cut(s) 569, 593
BspHI TCATGA 1 cut(s) 540
BspLI GGNNCC 1 cut(s) 121
BspMI ACCTGC 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 621
BssECI CCNNGG 2 cut(s) 428, 429
Bst2UI CCWGG 2 cut(s) 216, 430
Bst4CI ACNGT 1 cut(s) 601
Bst6I CTCTTC 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 668
BstC8I GCNNGC 2 cut(s) 562, 660
BstDEI CTNAG 2 cut(s) 556, 580
BstEII GGTNACC 1 cut(s) 355
BstMWI GCNNNNNNNGC 2 cut(s) 561, 668
BstNI CCWGG 2 cut(s) 216, 430
BstPI GGTNACC 1 cut(s) 355
BstSCI CCNGG 2 cut(s) 214, 428
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 262
BveI ACCTGC 1 cut(s) 155
Cac8I GCNNGC 2 cut(s) 562, 660
CaiI CAGNNNCTG 1 cut(s) 134
CciI TCATGA 1 cut(s) 540
Cfr13I GGNCC 2 cut(s) 334, 504
CviAII CATG 2 cut(s) 97, 541
CviJI RGCY 7 cut(s) 94, 281, 381, 476, 483, 555, 584
CviKI_1 RGCY 7 cut(s) 94, 281, 381, 476, 483, 555, 584
DdeI CTNAG 2 cut(s) 556, 580
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Ecl136II GAGCTC 1 cut(s) 555
Eco24I GRGCYC 2 cut(s) 96, 557
Eco47I GGWCC 2 cut(s) 334, 504
Eco53kI GAGCTC 1 cut(s) 555
Eco88I CYCGRG 1 cut(s) 31
Eco91I GGTNACC 1 cut(s) 355
EcoICRI GAGCTC 1 cut(s) 555
EcoO109I RGGNCCY 1 cut(s) 334
EcoO65I GGTNACC 1 cut(s) 355
EcoRII CCWGG 2 cut(s) 214, 428
EcoT38I GRGCYC 2 cut(s) 96, 557
FaeI CATG 2 cut(s) 100, 544
FaqI GGGAC 2 cut(s) 85, 199
FatI CATG 2 cut(s) 96, 540
FauI CCCGC 1 cut(s) 584
Fnu4HI GCNGC 1 cut(s) 26
FriOI GRGCYC 2 cut(s) 96, 557
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 3 cut(s) 177, 620, 647
GluI GCNGC 1 cut(s) 26
HapII CCGG 1 cut(s) 626
Hin1II CATG 2 cut(s) 100, 544
HincII GTYRAC 1 cut(s) 597
HindII GTYRAC 1 cut(s) 597
HinfI GANTC 1 cut(s) 211
HpaI GTTAAC 1 cut(s) 597
HpaII CCGG 1 cut(s) 626
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 1 cut(s) 597
Hpy188I TCNGA 1 cut(s) 445
Hpy188III TCNNGA 5 cut(s) 33, 55, 332, 541, 647
Hpy8I GTNNAC 1 cut(s) 597
HpyAV CCTTC 2 cut(s) 343, 541
HpyCH4III ACNGT 1 cut(s) 601
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 5 cut(s) 106, 128, 143, 158, 658
HpyF10VI GCNNNNNNNGC 2 cut(s) 561, 668
HpyF3I CTNAG 2 cut(s) 556, 580
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 2 cut(s) 100, 544
KspAI GTTAAC 1 cut(s) 597
LmnI GCTCC 1 cut(s) 552
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 671
MaeI CTAG 3 cut(s) 177, 620, 647
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 2 cut(s) 355, 520
MboII GAAGA 5 cut(s) 70, 267, 565, 568, 662
MfeI CAATTG 2 cut(s) 195, 666
MhlI GDGCHC 3 cut(s) 96, 237, 557
MluCI AATT 5 cut(s) 78, 195, 364, 535, 666
MmeI TCCRAC 2 cut(s) 64, 232
MnlI CCTC 3 cut(s) 346, 347, 517
MseI TTAA 3 cut(s) 239, 465, 596
MslI CAYNNNNRTG 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 1 cut(s) 626
MspR9I CCNGG 2 cut(s) 216, 430
MunI CAATTG 2 cut(s) 195, 666
Mva1269I GAATGC 1 cut(s) 320
MvaI CCWGG 2 cut(s) 216, 430
MwoI GCNNNNNNNGC 2 cut(s) 561, 668
NlaIII CATG 2 cut(s) 100, 544
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 355
OliI CACNNNNGTG 1 cut(s) 114
PagI TCATGA 1 cut(s) 540
PasI CCCWGGG 1 cut(s) 429
PctI GAATGC 1 cut(s) 320
PfeI GAWTC 1 cut(s) 211
PkrI GCNGC 1 cut(s) 27
PpuMI RGGWCCY 1 cut(s) 334
Psp124BI GAGCTC 1 cut(s) 557
Psp1406I AACGTT 1 cut(s) 462
Psp5II RGGWCCY 1 cut(s) 334
Psp6I CCWGG 2 cut(s) 214, 428
PspEI GGTNACC 1 cut(s) 355
PspGI CCWGG 2 cut(s) 214, 428
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 2 cut(s) 334, 504
PspPPI RGGWCCY 1 cut(s) 334
PstNI CAGNNNCTG 1 cut(s) 134
PvuII CAGCTG 1 cut(s) 476
RseI CAYNNNNRTG 1 cut(s) 114
SacI GAGCTC 1 cut(s) 557
SaqAI TTAA 3 cut(s) 239, 465, 596
SatI GCNGC 1 cut(s) 26
Sau96I GGNCC 2 cut(s) 334, 504
ScrFI CCNGG 2 cut(s) 216, 430
SduI GDGCHC 3 cut(s) 96, 237, 557
SetI ASST 9 cut(s) 20, 169, 339, 357, 465, 472, 478, 533, 557
SfaNI GCATC 1 cut(s) 671
SinI GGWCC 2 cut(s) 334, 504
SmiMI CAYNNNNRTG 1 cut(s) 114
SmlI CTYRAG 2 cut(s) 226, 295
SmoI CTYRAG 2 cut(s) 226, 295
SpeI ACTAGT 1 cut(s) 176
Sse9I AATT 5 cut(s) 78, 195, 364, 535, 666
SsiI CCGC 1 cut(s) 591
SspMI CTAG 3 cut(s) 177, 620, 647
SstI GAGCTC 1 cut(s) 557
StyD4I CCNGG 2 cut(s) 214, 428
TaaI ACNGT 1 cut(s) 601
TaiI ACGT 1 cut(s) 465
TasI AATT 5 cut(s) 78, 195, 364, 535, 666
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 3 cut(s) 239, 465, 596
Tru9I TTAA 3 cut(s) 239, 465, 596
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 2 cut(s) 364, 529
VpaK11BI GGWCC 2 cut(s) 334, 504
XbaI TCTAGA 1 cut(s) 646
XspI CTAG 3 cut(s) 177, 620, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.