Rmu_sc0000510.1_g000021
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000510.1
OG0000401
Physical Location & Seq
Forward (+)
100424 .. 104277
3854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000510.1_g000021.1.cds

Sequence Viewer

Length: 1344 bp
atggcaacagaaaccatggaggaaggactactaagtatttccaaagccgatggggaatcctcctcctcctcctccgcagtcactagtgttattgttatgagcactttagtggccctttgtggttcactctccaccggctgtgctacagggtattcatcagctgctgaatctggaattgtggaagacttggaccttactcttgtagcatactcagtttttggttcaataatgacaattggaggtgtcattggttcattgatgaatggcagagtaactgatctcatcggtcgtagagctaatgctttgtggctggatattggaagactctcaatcggatttagcgtcgggataatttactacgtggtaccagtgtacatagcagaaataacgcccaaggaccacagaggaagattcacttcagctaatcagttgatgattagctgtggcttttccttattctatttcattggaaataacataacctggcgcaccatggcggcaatcggtgctattccaggtctactacaaattctaggcatatttttcattccagagtctccaagatggctggctaaaattggtagacaaaaggaccttgaagctgttctggaacgccttagaggaaagaacgctgacatatttcaagaagcagatgacatcatggagtgtacaaaaatctttcagcagaaatcagagacattgcttgacttgttccagaagatatatgctcactcactcattgttggagttgggctactgtcactgcagcaatttgggggtgcaaatgccgtagcttattacggaagctctatatttgaagatgccggtttttcaagtagcattgggactatttcactggctattatcgggatacctgttattgcattgagtgtgctcttaacggacaaattgggaagacgaccacttctactggtttctgctgctggaatgtgcttgagtttgtttcttgtgggcttggctttctgctttcaggacctacaccagtgggaggcgctcactcccattcttgtgtttatcggcatgttgggttatggtgcatcatacttgattggcatggcaggtttaccctgggttattatgtcagagatattcccagtaaacattaaaggttcggctggaagcctgttaagtttggtttattggtcttgttcctggataataacatacaccttcaattttattatggaatggagctcagaaggaacatttttcttcttctcggtgattaacggtttagcagttctgttcgtagcaaagcttgtgccagaaaccaaggggcgaactctagaagaaatacaagcatcaatctcccatcaaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

447

Amino Acids

48.27

Weight (kDa)

5.15

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1070
Acc65I GGTACC 1 cut(s) 364
AccB1I GGYRCC 1 cut(s) 364
AccI GTMKAC 2 cut(s) 520, 583
AciI CCGC 2 cut(s) 75, 497
AcsI RAATTY 1 cut(s) 528
AcuI CTGAAG 1 cut(s) 402
AfaI GTAC 3 cut(s) 366, 374, 670
AfiI CCNNNNNNNGG 1 cut(s) 1009
AgsI TTSAA 6 cut(s) 225, 599, 644, 818, 834, 1195
AhlI ACTAGT 1 cut(s) 83
AjnI CCWGG 4 cut(s) 482, 514, 1088, 1172
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 9 cut(s) 161, 296, 422, 441, 602, 794, 807, 1215, 1279
AluI AGCT 9 cut(s) 161, 296, 422, 441, 602, 794, 807, 1215, 1279
Alw21I GWGCWC 3 cut(s) 104, 897, 1217
Alw26I GTCTC 2 cut(s) 561, 689
AlwNI CAGNNNCTG 1 cut(s) 164
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 3 cut(s) 161, 766, 941
ApoI RAATTY 1 cut(s) 528
Asp700I GAANNNNTTC 1 cut(s) 603
Asp718I GGTACC 1 cut(s) 364
AspLEI GCGC 2 cut(s) 489, 1015
AspS9I GGNCC 5 cut(s) 112, 190, 397, 592, 994
AsuHPI GGTGA 1 cut(s) 1255
AvaII GGWCC 4 cut(s) 190, 397, 592, 994
BaeI ACNNNNGTAYC 2 cut(s) 356, 389
BanI GGYRCC 1 cut(s) 364
BanII GRGCYC 1 cut(s) 1217
BbsI GAAGAC 3 cut(s) 189, 328, 922
Bbv12I GWGCWC 3 cut(s) 104, 897, 1217
BbvI GCAGC 3 cut(s) 148, 778, 928
BccI CCATC 3 cut(s) 44, 558, 1341
BceAI ACGGC 1 cut(s) 773
BciT130I CCWGG 4 cut(s) 484, 516, 1090, 1174
BciVI GTATCC 1 cut(s) 864
BcoDI GTCTC 2 cut(s) 561, 689
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 3 cut(s) 84, 533, 1307
BfmI CTRYAG 2 cut(s) 144, 764
BfoI RGCGCY 1 cut(s) 1016
BfuAI ACCTGC 1 cut(s) 1070
BfuI GTATCC 1 cut(s) 864
BisI GCNGC 4 cut(s) 162, 498, 767, 942
BlsI GCNGC 4 cut(s) 163, 499, 768, 943
Bme1390I CCNGG 4 cut(s) 484, 516, 1090, 1174
Bme18I GGWCC 4 cut(s) 190, 397, 592, 994
BmgT120I GGNCC 5 cut(s) 112, 190, 397, 592, 994
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 4 cut(s) 484, 516, 1090, 1174
BmrI ACTGGG 1 cut(s) 1109
BmsI GCATC 3 cut(s) 811, 1067, 1331
BmuI ACTGGG 1 cut(s) 1109
BpiI GAAGAC 3 cut(s) 189, 328, 922
BpuEI CTTGAG 1 cut(s) 976
BsaAI YACGTR 1 cut(s) 361
BsaJI CCNNGG 6 cut(s) 15, 393, 492, 1088, 1089, 1293
Bsc4I CCNNNNNNNGG 1 cut(s) 1009
Bse118I RCCGGY 2 cut(s) 134, 824
Bse1I ACTGG 5 cut(s) 368, 861, 936, 1003, 1115
Bse3DI GCAATG 1 cut(s) 698
BseBI CCWGG 4 cut(s) 484, 516, 1090, 1174
BseDI CCNNGG 6 cut(s) 15, 393, 492, 1088, 1089, 1293
BseLI CCNNNNNNNGG 1 cut(s) 1009
BseMI GCAATG 1 cut(s) 698
BseMII CTCAG 2 cut(s) 225, 1230
BseNI ACTGG 5 cut(s) 368, 861, 936, 1003, 1115
BseRI GAGGAG 4 cut(s) 52, 55, 58, 61
BseXI GCAGC 3 cut(s) 148, 778, 928
Bsh1285I CGRYCG 1 cut(s) 289
BshFI GGCC 1 cut(s) 113
BshNI GGYRCC 1 cut(s) 364
BsiEI CGRYCG 1 cut(s) 289
BsiHKAI GWGCWC 3 cut(s) 104, 897, 1217
BsiSI CCGG 2 cut(s) 135, 825
BslFI GGGAC 1 cut(s) 859
BslI CCNNNNNNNGG 1 cut(s) 1009
BsmAI GTCTC 2 cut(s) 561, 689
BsmFI GGGAC 1 cut(s) 859
BsnI GGCC 1 cut(s) 113
Bsp1286I GDGCHC 3 cut(s) 104, 897, 1217
Bsp1407I TGTACA 2 cut(s) 372, 668
Bsp143I GATC 1 cut(s) 277
Bsp19I CCATGG 2 cut(s) 15, 492
BspACI CCGC 2 cut(s) 75, 497
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 2 cut(s) 224, 1229
BspLI GGNNCC 1 cut(s) 366
BspMAI CTGCAG 1 cut(s) 768
BspMI ACCTGC 1 cut(s) 1070
BspT107I GGYRCC 1 cut(s) 364
BsrDI GCAATG 1 cut(s) 698
BsrFI RCCGGY 2 cut(s) 134, 824
BsrGI TGTACA 2 cut(s) 372, 668
BsrI ACTGG 5 cut(s) 368, 861, 936, 1003, 1115
BssAI RCCGGY 2 cut(s) 134, 824
BssECI CCNNGG 6 cut(s) 15, 393, 492, 1088, 1089, 1293
BssMI GATC 1 cut(s) 277
BssT1I CCWWGG 4 cut(s) 15, 393, 492, 1293
Bst2UI CCWGG 4 cut(s) 484, 516, 1090, 1174
Bst4CI ACNGT 2 cut(s) 759, 1253
BstAPI GCANNNNNTGC 1 cut(s) 506
BstAUI TGTACA 2 cut(s) 372, 668
BstBAI YACGTR 1 cut(s) 361
BstC8I GCNNGC 1 cut(s) 570
BstDEI CTNAG 4 cut(s) 32, 211, 617, 1216
BstDSI CCRYGG 2 cut(s) 15, 492
BstH2I RGCGCY 1 cut(s) 1016
BstHHI GCGC 2 cut(s) 489, 1015
BstKTI GATC 1 cut(s) 280
BstMAI GTCTC 2 cut(s) 561, 689
BstMBI GATC 1 cut(s) 277
BstMCI CGRYCG 1 cut(s) 289
BstMWI GCNNNNNNNGC 1 cut(s) 506
BstNI CCWGG 4 cut(s) 484, 516, 1090, 1174
BstNSI RCATGY 1 cut(s) 1045
BstSCI CCNGG 4 cut(s) 482, 514, 1088, 1172
BstSFI CTRYAG 2 cut(s) 144, 764
BstV1I GCAGC 3 cut(s) 148, 778, 928
BstV2I GAAGAC 3 cut(s) 189, 328, 922
BsuI GTATCC 1 cut(s) 864
BsuRI GGCC 1 cut(s) 113
BtgI CCRYGG 2 cut(s) 15, 492
BtsI GCAGTG 1 cut(s) 761
BtsIMutI CAGTG 4 cut(s) 375, 761, 854, 1010
BveI ACCTGC 1 cut(s) 1070
Cac8I GCNNGC 1 cut(s) 570
CaiI CAGNNNCTG 1 cut(s) 164
CfoI GCGC 2 cut(s) 489, 1015
Cfr10I RCCGGY 2 cut(s) 134, 824
Cfr13I GGNCC 5 cut(s) 112, 190, 397, 592, 994
CseI GACGC 1 cut(s) 331
Csp6I GTAC 3 cut(s) 365, 373, 669
CviAII CATG 5 cut(s) 16, 493, 661, 1042, 1075
CviQI GTAC 3 cut(s) 365, 373, 669
DdeI CTNAG 4 cut(s) 32, 211, 617, 1216
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
Ecl136II GAGCTC 1 cut(s) 1215
Eco130I CCWWGG 4 cut(s) 15, 393, 492, 1293
Eco24I GRGCYC 1 cut(s) 1217
Eco47I GGWCC 4 cut(s) 190, 397, 592, 994
Eco53kI GAGCTC 1 cut(s) 1215
Eco57I CTGAAG 1 cut(s) 402
EcoICRI GAGCTC 1 cut(s) 1215
EcoO109I RGGNCCY 2 cut(s) 592, 994
EcoRII CCWGG 4 cut(s) 482, 514, 1088, 1172
EcoT14I CCWWGG 4 cut(s) 15, 393, 492, 1293
EcoT38I GRGCYC 1 cut(s) 1217
ErhI CCWWGG 4 cut(s) 15, 393, 492, 1293
FaeI CATG 5 cut(s) 19, 496, 664, 1045, 1078
FalI AAGNNNNNCTT 2 cut(s) 400, 432
FaqI GGGAC 1 cut(s) 859
FatI CATG 5 cut(s) 15, 492, 660, 1041, 1074
FblI GTMKAC 2 cut(s) 520, 583
Fnu4HI GCNGC 4 cut(s) 162, 498, 767, 942
FriOI GRGCYC 1 cut(s) 1217
Fsp4HI GCNGC 4 cut(s) 162, 498, 767, 942
FspBI CTAG 3 cut(s) 84, 533, 1307
GlaI GCGC 2 cut(s) 488, 1014
GluI GCNGC 4 cut(s) 162, 498, 767, 942
HaeII RGCGCY 1 cut(s) 1016
HaeIII GGCC 1 cut(s) 113
HapII CCGG 2 cut(s) 135, 825
HgaI GACGC 1 cut(s) 331
HhaI GCGC 2 cut(s) 489, 1015
Hin1II CATG 5 cut(s) 19, 496, 664, 1045, 1078
Hin6I GCGC 2 cut(s) 487, 1013
HinP1I GCGC 2 cut(s) 487, 1013
HindIII AAGCTT 1 cut(s) 1277
HinfI GANTC 5 cut(s) 56, 167, 324, 411, 554
HpaII CCGG 2 cut(s) 135, 825
HphI GGTGA 1 cut(s) 1255
Hpy166II GTNNAC 7 cut(s) 125, 373, 521, 584, 669, 1085, 1120
Hpy188I TCNGA 4 cut(s) 335, 694, 1105, 1219
Hpy188III TCNNGA 9 cut(s) 171, 346, 551, 608, 644, 715, 868, 992, 1307
Hpy8I GTNNAC 7 cut(s) 125, 373, 521, 584, 669, 1085, 1120
Hpy99I CGWCG 1 cut(s) 347
HpyAV CCTTC 3 cut(s) 17, 1201, 1214
HpyCH4III ACNGT 2 cut(s) 759, 1253
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 4 cut(s) 766, 782, 884, 1058
HpyF10VI GCNNNNNNNGC 1 cut(s) 506
HpyF3I CTNAG 4 cut(s) 32, 211, 617, 1216
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 5 cut(s) 19, 496, 664, 1045, 1078
HspAI GCGC 2 cut(s) 487, 1013
KpnI GGTACC 1 cut(s) 368
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 1212
Lsp1109I GCAGC 3 cut(s) 148, 778, 928
LweI GCATC 3 cut(s) 811, 1067, 1331
MaeI CTAG 3 cut(s) 84, 533, 1307
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 3 cut(s) 79, 271, 759
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 9 cut(s) 194, 333, 420, 730, 830, 927, 1225, 1228, 1322
MfeI CAATTG 1 cut(s) 234
MhlI GDGCHC 3 cut(s) 104, 897, 1217
MluCI AATT 8 cut(s) 174, 234, 351, 528, 576, 770, 908, 1195
MlyI GAGTC 2 cut(s) 318, 563
MmeI TCCRAC 1 cut(s) 724
MroXI GAANNNNTTC 1 cut(s) 603
MseI TTAA 4 cut(s) 899, 1125, 1148, 1248
MslI CAYNNNNRTG 2 cut(s) 107, 1028
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 2 cut(s) 135, 825
MspR9I CCNGG 4 cut(s) 484, 516, 1090, 1174
MunI CAATTG 1 cut(s) 234
MvaI CCWGG 4 cut(s) 484, 516, 1090, 1174
MwoI GCNNNNNNNGC 1 cut(s) 506
NcoI CCATGG 2 cut(s) 15, 492
NdeII GATC 1 cut(s) 277
NlaIII CATG 5 cut(s) 19, 496, 664, 1045, 1078
NlaIV GGNNCC 1 cut(s) 366
NmuCI GTSAC 2 cut(s) 79, 759
NspI RCATGY 1 cut(s) 1045
OliI CACNNNNGTG 1 cut(s) 107
PasI CCCWGGG 1 cut(s) 1089
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PdmI GAANNNNTTC 1 cut(s) 603
PfeI GAWTC 3 cut(s) 56, 167, 411
PfoI TCCNGGA 1 cut(s) 1172
PkrI GCNGC 4 cut(s) 163, 499, 768, 943
PleI GAGTC 2 cut(s) 318, 562
PpsI GAGTC 2 cut(s) 318, 562
Ppu21I YACGTR 1 cut(s) 361
PpuMI RGGWCCY 2 cut(s) 592, 994
Psp124BI GAGCTC 1 cut(s) 1217
Psp5II RGGWCCY 2 cut(s) 592, 994
Psp6I CCWGG 4 cut(s) 482, 514, 1088, 1172
PspGI CCWGG 4 cut(s) 482, 514, 1088, 1172
PspN4I GGNNCC 1 cut(s) 366
PspPI GGNCC 5 cut(s) 112, 190, 397, 592, 994
PspPPI RGGWCCY 2 cut(s) 592, 994
PstI CTGCAG 1 cut(s) 768
PstNI CAGNNNCTG 1 cut(s) 164
PvuII CAGCTG 1 cut(s) 161
RsaI GTAC 3 cut(s) 366, 374, 670
RsaNI GTAC 3 cut(s) 365, 373, 669
RseI CAYNNNNRTG 2 cut(s) 107, 1028
SacI GAGCTC 1 cut(s) 1217
SaqAI TTAA 4 cut(s) 899, 1125, 1148, 1248
SatI GCNGC 4 cut(s) 162, 498, 767, 942
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 5 cut(s) 112, 190, 397, 592, 994
SchI GAGTC 2 cut(s) 318, 563
ScrFI CCNGG 4 cut(s) 484, 516, 1090, 1174
SduI GDGCHC 3 cut(s) 104, 897, 1217
SfaNI GCATC 3 cut(s) 811, 1067, 1331
SfcI CTRYAG 2 cut(s) 144, 764
SinI GGWCC 4 cut(s) 190, 397, 592, 994
SmiMI CAYNNNNRTG 2 cut(s) 107, 1028
SmlI CTYRAG 1 cut(s) 955
SmoI CTYRAG 1 cut(s) 955
SpeI ACTAGT 1 cut(s) 83
Sse9I AATT 8 cut(s) 174, 234, 351, 528, 576, 770, 908, 1195
SsiI CCGC 2 cut(s) 75, 497
SspMI CTAG 3 cut(s) 84, 533, 1307
SstI GAGCTC 1 cut(s) 1217
StyD4I CCNGG 4 cut(s) 482, 514, 1088, 1172
StyI CCWWGG 4 cut(s) 15, 393, 492, 1293
TaaI ACNGT 2 cut(s) 759, 1253
TaiI ACGT 1 cut(s) 363
TaqII GACCGA 1 cut(s) 275
TasI AATT 8 cut(s) 174, 234, 351, 528, 576, 770, 908, 1195
TatI WGTACW 2 cut(s) 372, 668
TauI GCSGC 1 cut(s) 500
TfiI GAWTC 3 cut(s) 56, 167, 411
Tru1I TTAA 4 cut(s) 899, 1125, 1148, 1248
Tru9I TTAA 4 cut(s) 899, 1125, 1148, 1248
TscAI CASTG 4 cut(s) 375, 768, 861, 1010
TseFI GTSAC 2 cut(s) 79, 759
TseI GCWGC 3 cut(s) 161, 766, 941
Tsp45I GTSAC 2 cut(s) 79, 759
TspDTI ATGAA 5 cut(s) 144, 243, 275, 454, 535
TspGWI ACGGA 2 cut(s) 816, 917
TspRI CASTG 4 cut(s) 375, 768, 861, 1010
VpaK11BI GGWCC 4 cut(s) 190, 397, 592, 994
XapI RAATTY 1 cut(s) 528
XbaI TCTAGA 1 cut(s) 1306
XceI RCATGY 1 cut(s) 1045
XmiI GTMKAC 2 cut(s) 520, 583
XmnI GAANNNNTTC 1 cut(s) 603
XspI CTAG 3 cut(s) 84, 533, 1307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.