Rh3DG054700
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000401
Physical Location & Seq
Forward (+)
3719519 .. 3721238
1720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG054700.1

Sequence Viewer

Length: 624 bp
ATGGAAGAAGGGCTACTAACTCTGTCAGGGTCAATGTCCAATATCAATGGAGCTTCAAGTGATTGCAGTGACGTCATAACTCCAGGAGGGTTCTCCTCCTCGGCCACCCCCGTTGTCGTTCTGAGCGCATTGGTGGCTCTTTGTGGTTCCTTTGGCTATGGCTGTGCTGTAGGATATTCATCCTCTGCTGAATCAGGAATTTTGGAAGACTTGGGCCTTACTATTGCAGCATACTCACTTTTTGGTTCAATTTTGACAATTGGAGGAATAATTGGTGCATTAGTAAATGGGAAGCTAACGGATCTCATTGGTCGTAGAGGTACAATGTGGTTCTCTCAAGTGTTCAGTGCTGCTGGGTGGTTCACCATGGCATTTGCACAGAGTGCTTGGTGGCTGGATATTGGAAGGTTTTCATTGGGAGTTGGCATCGCGATAATTTGCTATGTGGTACCTGTATACATAGCAGAAATAACACCCAAGGATCTGAGAGGAAGGTTTACTTCAGCTCATCAGTTGATGATGAGTTGTGGCGTAGCACTGGCATTTTTCCTTGGAACTGTCATAACCTGGCGAACCTTGGCCGTGATAAGTAAATCATCTGTTGGTCATTCAGTCCATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

207

Amino Acids

21.53

Weight (kDa)

5.83

Isoelectric Point (pI)

31.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 47 - 196 9.9e-18 Major Facilitator Superfamily
Sugar_tr PF00083 74 - 187 2.2e-23 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 75
Acc65I GGTACC 1 cut(s) 448
AccB1I GGYRCC 1 cut(s) 448
AccI GTMKAC 1 cut(s) 456
AccII CGCG 1 cut(s) 431
AclWI GGATC 2 cut(s) 309, 489
AcoI YGGCCR 2 cut(s) 102, 579
AcsI RAATTY 1 cut(s) 198
AcuI CTGAAG 1 cut(s) 486
AcyI GRCGYC 1 cut(s) 72
AdeI CACNNNGTG 1 cut(s) 383
AfaI GTAC 2 cut(s) 322, 450
AgsI TTSAA 2 cut(s) 57, 249
AjnI CCWGG 2 cut(s) 82, 566
AluBI AGCT 3 cut(s) 53, 295, 506
AluI AGCT 3 cut(s) 53, 295, 506
AlwI GGATC 2 cut(s) 309, 489
AoxI GGCC 3 cut(s) 102, 214, 579
ApeKI GCWGC 2 cut(s) 227, 350
ApoI RAATTY 1 cut(s) 198
Asp700I GAANNNNTTC 1 cut(s) 409
Asp718I GGTACC 1 cut(s) 448
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 355
BanI GGYRCC 1 cut(s) 448
BarI GAAGNNNNNNTAC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 239, 337
BceAI ACGGC 1 cut(s) 566
BciT130I CCWGG 2 cut(s) 84, 568
BfmI CTRYAG 1 cut(s) 168
BisI GCNGC 2 cut(s) 228, 351
BlsI GCNGC 2 cut(s) 229, 352
Bme1390I CCNGG 2 cut(s) 84, 568
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 2 cut(s) 148, 450
BmrFI CCNGG 2 cut(s) 84, 568
BmsI GCATC 1 cut(s) 435
BpiI GAAGAC 1 cut(s) 213
BpmI CTGGAG 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 321
BsaBI GATNNNNATC 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 5 cut(s) 99, 366, 477, 550, 576
Bse1I ACTGG 1 cut(s) 543
Bse8I GATNNNNATC 1 cut(s) 178
BseBI CCWGG 2 cut(s) 84, 568
BseDI CCNNGG 5 cut(s) 99, 366, 477, 550, 576
BseGI GGATG 1 cut(s) 179
BseJI GATNNNNATC 1 cut(s) 178
BseMII CTCAG 2 cut(s) 113, 476
BseNI ACTGG 1 cut(s) 543
BseRI GAGGAG 2 cut(s) 85, 88
BseXI GCAGC 2 cut(s) 239, 337
BseYI CCCAGC 1 cut(s) 353
Bsh1236I CGCG 1 cut(s) 431
BshFI GGCC 3 cut(s) 104, 216, 581
BshNI GGYRCC 1 cut(s) 448
BsnI GGCC 3 cut(s) 104, 216, 581
Bsp143I GATC 2 cut(s) 301, 481
Bsp19I CCATGG 1 cut(s) 366
Bsp68I TCGCGA 1 cut(s) 431
BspANI GGCC 3 cut(s) 104, 216, 581
BspCNI CTCAG 2 cut(s) 114, 477
BspFNI CGCG 1 cut(s) 431
BspLI GGNNCC 2 cut(s) 148, 450
BspPI GGATC 2 cut(s) 309, 489
BspT107I GGYRCC 1 cut(s) 448
BsrI ACTGG 1 cut(s) 543
BssECI CCNNGG 5 cut(s) 99, 366, 477, 550, 576
BssMI GATC 2 cut(s) 301, 481
BssNAI GTATAC 1 cut(s) 457
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 4 cut(s) 366, 477, 550, 576
Bst1107I GTATAC 1 cut(s) 457
Bst2UI CCWGG 2 cut(s) 84, 568
Bst4CI ACNGT 1 cut(s) 559
BstACI GRCGYC 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 383
BstDEI CTNAG 2 cut(s) 122, 485
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 1 cut(s) 179
BstFNI CGCG 1 cut(s) 431
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 2 cut(s) 304, 484
BstMBI GATC 2 cut(s) 301, 481
BstMWI GCNNNNNNNGC 2 cut(s) 134, 383
BstNI CCWGG 2 cut(s) 84, 568
BstSCI CCNGG 2 cut(s) 82, 566
BstSFI CTRYAG 1 cut(s) 168
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 2 cut(s) 239, 337
BstV2I GAAGAC 1 cut(s) 213
BstX2I RGATCY 2 cut(s) 301, 481
BstYI RGATCY 2 cut(s) 301, 481
BstZ17I GTATAC 1 cut(s) 457
BsuRI GGCC 3 cut(s) 104, 216, 581
BtgI CCRYGG 1 cut(s) 366
BtgZI GCGATG 1 cut(s) 412
BtsCI GGATG 1 cut(s) 179
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 3 cut(s) 73, 352, 536
BtuMI TCGCGA 1 cut(s) 431
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 2 cut(s) 321, 449
CspCI CAANNNNNGTGG 2 cut(s) 94, 129
CviAII CATG 2 cut(s) 367, 617
CviQI GTAC 2 cut(s) 321, 449
DdeI CTNAG 2 cut(s) 122, 485
DpnI GATC 2 cut(s) 303, 483
DpnII GATC 2 cut(s) 301, 481
DraIII CACNNNGTG 1 cut(s) 383
EaeI YGGCCR 2 cut(s) 102, 579
Eco130I CCWWGG 4 cut(s) 366, 477, 550, 576
Eco57I CTGAAG 1 cut(s) 486
EcoRII CCWGG 2 cut(s) 82, 566
EcoT14I CCWWGG 4 cut(s) 366, 477, 550, 576
ErhI CCWWGG 4 cut(s) 366, 477, 550, 576
FaeI CATG 2 cut(s) 370, 620
FalI AAGNNNNNCTT 2 cut(s) 484, 516
FatI CATG 2 cut(s) 366, 616
FblI GTMKAC 1 cut(s) 456
Fnu4HI GCNGC 2 cut(s) 228, 351
FokI GGATG 1 cut(s) 166
Fsp4HI GCNGC 2 cut(s) 228, 351
GlaI GCGC 1 cut(s) 127
GluI GCNGC 2 cut(s) 228, 351
GsaI CCCAGC 1 cut(s) 357
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 3 cut(s) 104, 216, 581
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 2 cut(s) 370, 620
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HinfI GANTC 1 cut(s) 191
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 3 cut(s) 363, 457, 498
Hpy188I TCNGA 2 cut(s) 123, 486
Hpy188III TCNNGA 2 cut(s) 195, 430
Hpy8I GTNNAC 3 cut(s) 363, 457, 498
HpyAV CCTTC 2 cut(s) 399, 486
HpyCH4III ACNGT 1 cut(s) 559
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 4 cut(s) 66, 227, 278, 377
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 383
HpyF3I CTNAG 2 cut(s) 122, 485
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 2 cut(s) 370, 620
HspAI GCGC 1 cut(s) 126
KpnI GGTACC 1 cut(s) 452
Kzo9I GATC 2 cut(s) 301, 481
LmnI GCTCC 1 cut(s) 50
Lsp1109I GCAGC 2 cut(s) 239, 337
LweI GCATC 1 cut(s) 435
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 68
MalI GATC 2 cut(s) 303, 483
MboI GATC 2 cut(s) 301, 481
MboII GAAGA 2 cut(s) 17, 218
MfeI CAATTG 1 cut(s) 258
MflI RGATCY 2 cut(s) 301, 481
MluCI AATT 5 cut(s) 198, 249, 258, 270, 435
MnlI CCTC 7 cut(s) 80, 106, 109, 193, 257, 311, 482
MroXI GAANNNNTTC 1 cut(s) 409
MspR9I CCNGG 2 cut(s) 84, 568
MunI CAATTG 1 cut(s) 258
MvaI CCWGG 2 cut(s) 84, 568
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 2 cut(s) 134, 383
NcoI CCATGG 1 cut(s) 366
NdeII GATC 2 cut(s) 301, 481
NlaIII CATG 2 cut(s) 370, 620
NlaIV GGNNCC 2 cut(s) 148, 450
NmeAIII GCCGAG 1 cut(s) 80
NmuCI GTSAC 1 cut(s) 68
NruI TCGCGA 1 cut(s) 431
PdmI GAANNNNTTC 1 cut(s) 409
PfeI GAWTC 1 cut(s) 191
PfoI TCCNGGA 1 cut(s) 82
PkrI GCNGC 2 cut(s) 229, 352
Psp6I CCWGG 2 cut(s) 82, 566
PspFI CCCAGC 1 cut(s) 353
PspGI CCWGG 2 cut(s) 82, 566
PspN4I GGNNCC 2 cut(s) 148, 450
PspPI GGNCC 1 cut(s) 214
PsuI RGATCY 2 cut(s) 301, 481
RruI TCGCGA 1 cut(s) 431
RsaI GTAC 2 cut(s) 322, 450
RsaNI GTAC 2 cut(s) 321, 449
SatI GCNGC 2 cut(s) 228, 351
Sau3AI GATC 2 cut(s) 301, 481
Sau96I GGNCC 1 cut(s) 214
ScrFI CCNGG 2 cut(s) 84, 568
SfaNI GCATC 1 cut(s) 435
SfcI CTRYAG 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 336
SmoI CTYRAG 1 cut(s) 336
Sse9I AATT 5 cut(s) 198, 249, 258, 270, 435
StyD4I CCNGG 2 cut(s) 82, 566
StyI CCWWGG 4 cut(s) 366, 477, 550, 576
TaaI ACNGT 1 cut(s) 559
TaiI ACGT 1 cut(s) 75
TasI AATT 5 cut(s) 198, 249, 258, 270, 435
TfiI GAWTC 1 cut(s) 191
TscAI CASTG 3 cut(s) 73, 352, 543
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 2 cut(s) 227, 350
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 168, 402
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 3 cut(s) 73, 352, 543
XapI RAATTY 1 cut(s) 198
XmiI GTMKAC 1 cut(s) 456
XmnI GAANNNNTTC 1 cut(s) 409
ZraI GACGTC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.