Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000401

Physical Location & Seq

Genomic Coordinates Forward (+)

38609240 .. 38610081

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG197900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGAAGAAGGGCTACTAACTCTGTCAGGGTCAAAGGCCAACATCAATGGAGCTTCAGGTGATTGCGGTGACGTCATAAACCCAAGTGGGTCCTCCTCCTCAGCCACCCTTGTTGTGGTTCTGAGCACATTGGTGGCTCTCTCTGGTTCCTTCGGCTATGGCTGTGCTATAGGATATTCATCCTCTGCTGAATCAGGAATTCTGGAAGACTTCGGCGTTACTGTTGCGGCATTTTTGGTTCAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

82

Amino Acids

8.04

Weight (kDa)

4.05

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca	FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica	MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis	pycom12g21050 pycom12g21080
rosa_chinensis	RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata	RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora	Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii	Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa	Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha	Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana	Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	75
AciI	CCGC	2 cut(s)	66, 227
AcsI	RAATTY	1 cut(s)	198
AcuI	CTGAAG	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	242
AleI	CACNNNNGTG	1 cut(s)	131
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Alw21I	GWGCWC	1 cut(s)	128
AoxI	GGCC	1 cut(s)	36
ApoI	RAATTY	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	90
AsuHPI	GGTGA	2 cut(s)	71, 80
AvaII	GGWCC	1 cut(s)	90
BarI	GAAGNNNNNNTAC	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	128
BbvCI	CCTCAGC	1 cut(s)	100
BfmI	CTRYAG	1 cut(s)	168
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	90
BmiI	GGNNCC	2 cut(s)	91, 148
BpiI	GAAGAC	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	100
BsaBI	GATNNNNATC	1 cut(s)	178
BsaHI	GRCGYC	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse8I	GATNNNNATC	1 cut(s)	178
BseGI	GGATG	1 cut(s)	179
BseJI	GATNNNNATC	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	2 cut(s)	113, 114
BseRI	GAGGAG	2 cut(s)	85, 88
BshFI	GGCC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	115
BsnI	GGCC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	128
BspACI	CCGC	2 cut(s)	66, 227
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	2 cut(s)	113, 114
BspLI	GGNNCC	2 cut(s)	91, 148
BssNI	GRCGYC	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	223
BstACI	GRCGYC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	100, 122
BstF5I	GGATG	1 cut(s)	179
BstSFI	CTRYAG	1 cut(s)	168
BstV2I	GAAGAC	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	90
CspCI	CAANNNNNGTGG	2 cut(s)	94, 129
CviJI	RGCY	7 cut(s)	13, 38, 53, 104, 137, 156, 162
CviKI_1	RGCY	7 cut(s)	13, 38, 53, 104, 137, 156, 162
DdeI	CTNAG	2 cut(s)	100, 122
Eco47I	GGWCC	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	90
EcoRI	GAATTC	1 cut(s)	198
FaiI	YATR	3 cut(s)	77, 159, 170
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	228
GluI	GCNGC	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	72
HinfI	GANTC	1 cut(s)	191
HphI	GGTGA	2 cut(s)	71, 80
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	2 cut(s)	195, 203
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	72
HpyF3I	CTNAG	2 cut(s)	100, 122
HpySE526I	ACGT	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	72
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	5 cut(s)	12, 42, 129, 180, 188
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	2 cut(s)	68, 217
MboII	GAAGA	2 cut(s)	17, 218
MhlI	GDGCHC	1 cut(s)	128
MluCI	AATT	1 cut(s)	198
MnlI	CCTC	4 cut(s)	103, 106, 109, 193
MslI	CAYNNNNRTG	1 cut(s)	131
NlaIV	GGNNCC	2 cut(s)	91, 148
NmuCI	GTSAC	1 cut(s)	68
OliI	CACNNNNGTG	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	229
PpuMI	RGGWCCY	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	91, 148
PspPI	GGNCC	1 cut(s)	90
PspPPI	RGGWCCY	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	131
SatI	GCNGC	1 cut(s)	228
Sau96I	GGNCC	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	3 cut(s)	55, 61, 75
SfcI	CTRYAG	1 cut(s)	168
SgeI	CNNG	7 cut(s)	39, 69, 96, 122, 156, 207, 215
SinI	GGWCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	198
SsiI	CCGC	2 cut(s)	66, 227
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	1 cut(s)	75
TasI	AATT	1 cut(s)	198
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	90
XapI	RAATTY	1 cut(s)	198
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
ZraI	GACGTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.