RchiOBHm_Chr3g0453621
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
4010604 .. 4012984
2381 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42070

Sequence Viewer

Length: 891 bp
ATGAAGATTAATGCTTGGTGCCTGGATTTAGGACGGTTGTCAGTGGGATTTGGCGTTGGTATAACTTGCTACGTGGTACCTGTGTACATAGCAGAAATAACACCTAATGATCTTAGAGGAAGGTTTACTTCAGCTACTCAGTTGATGCTTTGTTGCGGTGTAGCACTAATATATTTCCTTGGAAATGTCATAACCTGGCGGACCTTGGCATTAGTCGGTGCTATTCCATCTCTTGTACACATAATAGGTCTATTTTTCATTCCAGAGTCTCCAAGGTGGCTGGCCAAGGTAGGTAGGCAAAAAGACTTTGAAGCGACTCTTCAGCGTCTTAGAGGAAAGAACACTGACACATCTCAAGAAGCAGCTGAAATCATGGATTATACAGAAATGTTTCAGCAGCACTCGGACAGAGTCCTGGACTTGTTCCAAAAGAGATATGCTCACTCACTCGCTATTGGAGTTGGGCTCATGTCACTGCAACAATTCGGGGGTACCAATGCAGTGGCATATTATGCAAGTTCTATATTTGTAGATGCAGGTTTTTCAAGTAGCATTGGGACTATATCATTGGCTATCATTGGGATACCTGGTGTTACATCGAGTGTGCTCTTAACAGACAAAGTCGGAAGACGACCACTTCTAATGGTTTCTGCTGGCGGATTGTGCTCGAGTGCCTTTCTTGTGGGTTTGGCATTCAGCTTTCAGGAACTCAACCTGTGGAAGGAGGTCACTCCCATTTTGGTGTACATTGGCTTGTTGGCTCAAAGTGTATCATACACAACAGGCATGGCAGGATTACCCTGGGTTATTATGTCAGAGATATTCCCTATAAACGTTAAAGGTTCAGCTGGAAGCCTGCTGAGTTTGGTGAACTGGTCTTGTGCTTGCTGA

Protein Analysis

296

Amino Acids

32.03

Weight (kDa)

8.14

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 5 - 294 2.2e-59 Sugar (and other) transporter
MFS_1 PF07690 10 - 291 2.8e-15 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 527
Acc65I GGTACC 2 cut(s) 76, 491
AccB1I GGYRCC 3 cut(s) 18, 76, 491
AciI CCGC 3 cut(s) 156, 199, 657
AclI AACGTT 1 cut(s) 834
AcoI YGGCCR 1 cut(s) 282
AcuI CTGAAG 2 cut(s) 114, 305
AfaI GTAC 5 cut(s) 78, 86, 237, 493, 746
AfiI CCNNNNNNNGG 1 cut(s) 721
AgsI TTSAA 2 cut(s) 311, 546
AjnI CCWGG 5 cut(s) 21, 194, 414, 586, 800
AluBI AGCT 4 cut(s) 134, 365, 699, 848
AluI AGCT 4 cut(s) 134, 365, 699, 848
Alw21I GWGCWC 2 cut(s) 609, 668
Alw26I GTCTC 1 cut(s) 273
Ama87I CYCGRG 1 cut(s) 667
AoxI GGCC 1 cut(s) 282
ApeKI GCWGC 2 cut(s) 362, 397
AseI ATTAAT 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 390
Asp718I GGTACC 2 cut(s) 76, 491
AspS9I GGNCC 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 880
AvaI CYCGRG 1 cut(s) 667
AvaII GGWCC 1 cut(s) 201
BaeI ACNNNNGTAYC 2 cut(s) 68, 101
BalI TGGCCA 1 cut(s) 284
BanI GGYRCC 3 cut(s) 18, 76, 491
BanII GRGCYC 1 cut(s) 468
BbsI GAAGAC 1 cut(s) 634
Bbv12I GWGCWC 2 cut(s) 609, 668
BbvI GCAGC 2 cut(s) 374, 409
BccI CCATC 1 cut(s) 235
BciT130I CCWGG 5 cut(s) 23, 196, 416, 588, 802
BciVI GTATCC 1 cut(s) 576
BcoDI GTCTC 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 527
BfuI GTATCC 1 cut(s) 576
BisI GCNGC 2 cut(s) 363, 398
BlsI GCNGC 2 cut(s) 364, 399
Bme1390I CCNGG 5 cut(s) 23, 196, 416, 588, 802
Bme18I GGWCC 1 cut(s) 201
BmeT110I CYCGRG 1 cut(s) 667
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 3 cut(s) 20, 78, 493
BmrFI CCNGG 5 cut(s) 23, 196, 416, 588, 802
BmsI GCATC 2 cut(s) 135, 523
BoxI GACNNNNGTC 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 634
BplI GAGNNNNNCTC 4 cut(s) 424, 456, 450, 482
BpuEI CTTGAG 1 cut(s) 339
BsaAI YACGTR 1 cut(s) 73
BsaJI CCNNGG 6 cut(s) 178, 204, 272, 285, 800, 801
Bsc4I CCNNNNNNNGG 1 cut(s) 721
Bse1I ACTGG 1 cut(s) 878
BseBI CCWGG 5 cut(s) 23, 196, 416, 588, 802
BseDI CCNNGG 6 cut(s) 178, 204, 272, 285, 800, 801
BseLI CCNNNNNNNGG 1 cut(s) 721
BseMII CTCAG 2 cut(s) 152, 851
BseNI ACTGG 1 cut(s) 878
BseXI GCAGC 2 cut(s) 374, 409
BshFI GGCC 1 cut(s) 284
BshNI GGYRCC 3 cut(s) 18, 76, 491
BsiHKAI GWGCWC 2 cut(s) 609, 668
BsiHKCI CYCGRG 1 cut(s) 667
BslFI GGGAC 1 cut(s) 571
BslI CCNNNNNNNGG 1 cut(s) 721
BsmAI GTCTC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 571
BsmI GAATGC 1 cut(s) 692
BsnI GGCC 1 cut(s) 284
BsoBI CYCGRG 1 cut(s) 667
Bsp1286I GDGCHC 3 cut(s) 468, 609, 668
Bsp1407I TGTACA 3 cut(s) 84, 235, 744
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 3 cut(s) 156, 199, 657
BspANI GGCC 1 cut(s) 284
BspCNI CTCAG 2 cut(s) 151, 852
BspLI GGNNCC 3 cut(s) 20, 78, 493
BspMI ACCTGC 1 cut(s) 527
BspT107I GGYRCC 3 cut(s) 18, 76, 491
BsrGI TGTACA 3 cut(s) 84, 235, 744
BsrI ACTGG 1 cut(s) 878
BssECI CCNNGG 6 cut(s) 178, 204, 272, 285, 800, 801
BssMI GATC 1 cut(s) 109
BssT1I CCWWGG 4 cut(s) 178, 204, 272, 285
Bst2UI CCWGG 5 cut(s) 23, 196, 416, 588, 802
Bst4CI ACNGT 1 cut(s) 36
Bst6I CTCTTC 1 cut(s) 324
BstAPI GCANNNNNTGC 1 cut(s) 512
BstAUI TGTACA 3 cut(s) 84, 235, 744
BstBAI YACGTR 1 cut(s) 73
BstC8I GCNNGC 4 cut(s) 282, 655, 857, 886
BstDEI CTNAG 4 cut(s) 113, 138, 329, 860
BstENI CCTNNNNNAGG 1 cut(s) 719
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 2 cut(s) 512, 663
BstNI CCWGG 5 cut(s) 23, 196, 416, 588, 802
BstPAI GACNNNNGTC 1 cut(s) 37
BstSCI CCNGG 5 cut(s) 21, 194, 414, 586, 800
BstV1I GCAGC 2 cut(s) 374, 409
BstV2I GAAGAC 1 cut(s) 634
BstXI CCANNNNNNTGG 1 cut(s) 502
BsuI GTATCC 1 cut(s) 576
BsuRI GGCC 1 cut(s) 284
BtsI GCAGTG 2 cut(s) 473, 507
BtsIMutI CAGTG 4 cut(s) 48, 342, 473, 507
BveI ACCTGC 1 cut(s) 527
Cac8I GCNNGC 4 cut(s) 282, 655, 857, 886
Cfr13I GGNCC 1 cut(s) 201
CseI GACGC 1 cut(s) 314
CsiI ACCWGGT 1 cut(s) 586
Csp6I GTAC 5 cut(s) 77, 85, 236, 492, 745
CviAII CATG 3 cut(s) 373, 469, 787
CviQI GTAC 5 cut(s) 77, 85, 236, 492, 745
DdeI CTNAG 4 cut(s) 113, 138, 329, 860
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
EciI GGCGGA 2 cut(s) 214, 672
Eco130I CCWWGG 4 cut(s) 178, 204, 272, 285
Eco24I GRGCYC 1 cut(s) 468
Eco47I GGWCC 1 cut(s) 201
Eco57I CTGAAG 2 cut(s) 114, 305
Eco88I CYCGRG 1 cut(s) 667
EcoNI CCTNNNNNAGG 1 cut(s) 719
EcoRII CCWGG 5 cut(s) 21, 194, 414, 586, 800
EcoT14I CCWWGG 4 cut(s) 178, 204, 272, 285
EcoT38I GRGCYC 1 cut(s) 468
ErhI CCWWGG 4 cut(s) 178, 204, 272, 285
FaeI CATG 3 cut(s) 376, 472, 790
FalI AAGNNNNNCTT 4 cut(s) 112, 144, 303, 335
FaqI GGGAC 1 cut(s) 571
FatI CATG 3 cut(s) 372, 468, 786
Fnu4HI GCNGC 2 cut(s) 363, 398
FriOI GRGCYC 1 cut(s) 468
Fsp4HI GCNGC 2 cut(s) 363, 398
GluI GCNGC 2 cut(s) 363, 398
HaeIII GGCC 1 cut(s) 284
HgaI GACGC 1 cut(s) 314
Hin1II CATG 3 cut(s) 376, 472, 790
HinfI GANTC 3 cut(s) 266, 316, 411
HphI GGTGA 1 cut(s) 880
Hpy166II GTNNAC 5 cut(s) 85, 126, 238, 745, 871
Hpy188I TCNGA 3 cut(s) 406, 626, 817
Hpy188III TCNNGA 3 cut(s) 263, 356, 704
Hpy8I GTNNAC 5 cut(s) 85, 126, 238, 745, 871
HpyAV CCTTC 2 cut(s) 114, 715
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4IV ACGT 2 cut(s) 72, 834
HpyCH4V TGCA 4 cut(s) 478, 500, 515, 536
HpyF10VI GCNNNNNNNGC 2 cut(s) 512, 663
HpyF3I CTNAG 4 cut(s) 113, 138, 329, 860
HpySE526I ACGT 2 cut(s) 72, 834
Hsp92II CATG 3 cut(s) 376, 472, 790
KpnI GGTACC 2 cut(s) 80, 495
Kzo9I GATC 1 cut(s) 109
Lsp1109I GCAGC 2 cut(s) 374, 409
LweI GCATC 2 cut(s) 135, 523
MabI ACCWGGT 1 cut(s) 586
MaeII ACGT 2 cut(s) 72, 834
MaeIII GTNAC 3 cut(s) 471, 592, 727
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 3 cut(s) 16, 311, 639
MhlI GDGCHC 3 cut(s) 468, 609, 668
MlsI TGGCCA 1 cut(s) 284
MluCI AATT 1 cut(s) 482
MluNI TGGCCA 1 cut(s) 284
MlyI GAGTC 3 cut(s) 275, 310, 420
MmeI TCCRAC 1 cut(s) 604
MnlI CCTC 3 cut(s) 110, 326, 718
Mox20I TGGCCA 1 cut(s) 284
MroXI GAANNNNTTC 1 cut(s) 390
MscI TGGCCA 1 cut(s) 284
MseI TTAA 3 cut(s) 9, 611, 837
MslI CAYNNNNRTG 1 cut(s) 740
Msp20I TGGCCA 1 cut(s) 284
MspA1I CMGCKG 2 cut(s) 365, 848
MspR9I CCNGG 5 cut(s) 23, 196, 416, 588, 802
Mva1269I GAATGC 1 cut(s) 692
MvaI CCWGG 5 cut(s) 23, 196, 416, 588, 802
MwoI GCNNNNNNNGC 2 cut(s) 512, 663
NdeII GATC 1 cut(s) 109
NlaIII CATG 3 cut(s) 376, 472, 790
NlaIV GGNNCC 3 cut(s) 20, 78, 493
NmuCI GTSAC 2 cut(s) 471, 727
PaeR7I CTCGAG 1 cut(s) 667
PasI CCCWGGG 1 cut(s) 801
PctI GAATGC 1 cut(s) 692
PdmI GAANNNNTTC 1 cut(s) 390
PflFI GACNNNGTC 2 cut(s) 410, 620
PfoI TCCNGGA 1 cut(s) 414
PkrI GCNGC 2 cut(s) 364, 399
PleI GAGTC 3 cut(s) 274, 310, 419
PpsI GAGTC 3 cut(s) 274, 310, 419
Ppu21I YACGTR 1 cut(s) 73
PshAI GACNNNNGTC 1 cut(s) 37
PshBI ATTAAT 1 cut(s) 9
Psp1406I AACGTT 1 cut(s) 834
Psp6I CCWGG 5 cut(s) 21, 194, 414, 586, 800
PspGI CCWGG 5 cut(s) 21, 194, 414, 586, 800
PspN4I GGNNCC 3 cut(s) 20, 78, 493
PspPI GGNCC 1 cut(s) 201
PspXI VCTCGAGB 1 cut(s) 667
PsyI GACNNNGTC 2 cut(s) 410, 620
PvuII CAGCTG 2 cut(s) 365, 848
RsaI GTAC 5 cut(s) 78, 86, 237, 493, 746
RsaNI GTAC 5 cut(s) 77, 85, 236, 492, 745
RseI CAYNNNNRTG 1 cut(s) 740
SaqAI TTAA 3 cut(s) 9, 611, 837
SatI GCNGC 2 cut(s) 363, 398
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 201
SchI GAGTC 3 cut(s) 275, 310, 420
ScrFI CCNGG 5 cut(s) 23, 196, 416, 588, 802
SduI GDGCHC 3 cut(s) 468, 609, 668
SexAI ACCWGGT 1 cut(s) 586
SfaNI GCATC 2 cut(s) 135, 523
Sfr274I CTCGAG 1 cut(s) 667
SinI GGWCC 1 cut(s) 201
SlaI CTCGAG 1 cut(s) 667
SmiMI CAYNNNNRTG 1 cut(s) 740
SmlI CTYRAG 2 cut(s) 354, 667
SmoI CTYRAG 2 cut(s) 354, 667
Sse9I AATT 1 cut(s) 482
SsiI CCGC 3 cut(s) 156, 199, 657
StyD4I CCNGG 5 cut(s) 21, 194, 414, 586, 800
StyI CCWWGG 4 cut(s) 178, 204, 272, 285
TaaI ACNGT 1 cut(s) 36
TaiI ACGT 2 cut(s) 75, 837
TaqI TCGA 2 cut(s) 599, 668
TasI AATT 1 cut(s) 482
TatI WGTACW 3 cut(s) 84, 235, 744
Tru1I TTAA 3 cut(s) 9, 611, 837
Tru9I TTAA 3 cut(s) 9, 611, 837
TscAI CASTG 4 cut(s) 48, 349, 480, 507
TseFI GTSAC 2 cut(s) 471, 727
TseI GCWGC 2 cut(s) 362, 397
Tsp45I GTSAC 2 cut(s) 471, 727
TspDTI ATGAA 2 cut(s) 17, 247
TspRI CASTG 4 cut(s) 48, 349, 480, 507
Tth111I GACNNNGTC 2 cut(s) 410, 620
VpaK11BI GGWCC 1 cut(s) 201
VspI ATTAAT 1 cut(s) 9
XagI CCTNNNNNAGG 1 cut(s) 719
XhoI CTCGAG 1 cut(s) 667
XmnI GAANNNNTTC 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.