Rorug02G0650100
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000401
Physical Location & Seq
Forward (+)
75874785 .. 75877038
2254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0650100.1

Sequence Viewer

Length: 585 bp
ATGGCGAAACCAATCGTGAAGCCTCTGATCCTGACGCTGCTTTCTCTGCTGCTCTTCTCGTCGTCGGCGCTCGCCAGCTCGGACTCGCCCTTCATCTTCGCGCACAAGAAGGCCTCCCTCAACAGGCTCAAGTCCGGCGCCGAGCGCGTTTCCGTCTCTATTGATATCTACAACCAAGGATCCTCAACTGCATATGATGTAAGTTTGAGTGATGAGAGCTGGCCTCAAGATCTCTTTGATTTTGTCAGCGGCAACGCTTCCAAGTCATGGGAAAGGCTTGATGCAGGTGGCATTGTATCCCACTCTTTTGAATTGGAGGCCAAGACGAAAGGACTGTTTAGCGGTGCACCAGCTGTTATTACATTTCGCATTCCCACAAAGGCTGCTCTGCAGGAGGCATATTCAACCCCCATACTGCCTTTAGATGTTCTTGCTGACAGGCCTCCTGAGAAGAAATTTGAGTGGAGGCTGCTGGCAAAGTATGGGTCTCTGATCTCTGTGTTATCCATTGTGGTTCTGTTCGTGTACCTGGTTGCCACTCCTGGTAAATCTGGTGGTGCAAAAGGAAGCAAGAAGAAGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

194

Amino Acids

20.95

Weight (kDa)

9.57

Isoelectric Point (pI)

29.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAP_beta PF05753 16 - 188 1.2e-55 Translocon-associated protein beta (TRAPB)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 275
Acc36I ACCTGC 1 cut(s) 275
AccB1I GGYRCC 1 cut(s) 137
AccB7I CCANNNNNTGG 1 cut(s) 267
AccII CGCG 2 cut(s) 101, 147
AciI CCGC 2 cut(s) 249, 342
AclWI GGATC 3 cut(s) 22, 174, 187
AcsI RAATTY 1 cut(s) 455
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 527
AfiI CCNNNNNNNGG 2 cut(s) 123, 267
AgsI TTSAA 2 cut(s) 311, 405
AjnI CCWGG 2 cut(s) 528, 541
AluBI AGCT 3 cut(s) 78, 219, 353
AluI AGCT 3 cut(s) 78, 219, 353
Alw21I GWGCWC 1 cut(s) 349
Alw26I GTCTC 2 cut(s) 160, 492
Alw44I GTGCAC 1 cut(s) 345
AlwI GGATC 3 cut(s) 22, 174, 187
AoxI GGCC 4 cut(s) 111, 221, 318, 440
ApaLI GTGCAC 1 cut(s) 345
ApeKI GCWGC 4 cut(s) 37, 49, 383, 469
ApoI RAATTY 1 cut(s) 455
ArsI GACNNNNNNTTYG 2 cut(s) 470, 502
AspLEI GCGC 4 cut(s) 70, 103, 140, 147
BaeGI GKGCMC 1 cut(s) 349
BamHI GGATCC 1 cut(s) 179
BanI GGYRCC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 349
BbvI GCAGC 4 cut(s) 24, 36, 370, 456
BciT130I CCWGG 2 cut(s) 530, 543
BciVI GTATCC 1 cut(s) 307
BcoDI GTCTC 2 cut(s) 160, 492
BfmI CTRYAG 1 cut(s) 389
BfoI RGCGCY 2 cut(s) 71, 141
BfuAI ACCTGC 1 cut(s) 275
BfuI GTATCC 1 cut(s) 307
BglII AGATCT 1 cut(s) 229
BisI GCNGC 5 cut(s) 38, 50, 250, 384, 470
BlsI GCNGC 5 cut(s) 39, 51, 251, 385, 471
Bme1390I CCNGG 2 cut(s) 530, 543
BmiI GGNNCC 2 cut(s) 139, 181
BmrFI CCNGG 2 cut(s) 530, 543
BmsI GCATC 1 cut(s) 271
BplI GAGNNNNNCTC 2 cut(s) 208, 240
BpuEI CTTGAG 2 cut(s) 113, 210
BsaHI GRCGYC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 492
BsaJI CCNNGG 1 cut(s) 175
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 267
BseBI CCWGG 2 cut(s) 530, 543
BseDI CCNNGG 1 cut(s) 175
BseLI CCNNNNNNNGG 2 cut(s) 123, 267
BseMII CTCAG 1 cut(s) 438
BseSI GKGCMC 1 cut(s) 349
BseXI GCAGC 4 cut(s) 24, 36, 370, 456
Bsh1236I CGCG 2 cut(s) 101, 147
BshFI GGCC 4 cut(s) 113, 223, 320, 442
BshNI GGYRCC 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 349
BsiSI CCGG 1 cut(s) 135
BslI CCNNNNNNNGG 2 cut(s) 123, 267
BsmAI GTCTC 2 cut(s) 160, 492
BsmBI CGTCTC 1 cut(s) 160
BsmI GAATGC 1 cut(s) 369
BsnI GGCC 4 cut(s) 113, 223, 320, 442
Bso31I GGTCTC 1 cut(s) 492
Bsp1286I GDGCHC 1 cut(s) 349
Bsp143I GATC 4 cut(s) 27, 179, 229, 492
BspACI CCGC 2 cut(s) 249, 342
BspANI GGCC 4 cut(s) 113, 223, 320, 442
BspCNI CTCAG 1 cut(s) 439
BspFNI CGCG 2 cut(s) 101, 147
BspLI GGNNCC 2 cut(s) 139, 181
BspMAI CTGCAG 1 cut(s) 393
BspMI ACCTGC 1 cut(s) 275
BspPI GGATC 3 cut(s) 22, 174, 187
BspQI GCTCTTC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 137
BspTNI GGTCTC 1 cut(s) 492
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 4 cut(s) 27, 179, 229, 492
BssNI GRCGYC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 175
Bst2UI CCWGG 2 cut(s) 530, 543
Bst4CI ACNGT 1 cut(s) 336
Bst6I CTCTTC 1 cut(s) 59
BstACI GRCGYC 1 cut(s) 138
BstC8I GCNNGC 4 cut(s) 72, 76, 221, 474
BstDEI CTNAG 1 cut(s) 447
BstFNI CGCG 2 cut(s) 101, 147
BstH2I RGCGCY 2 cut(s) 71, 141
BstHHI GCGC 4 cut(s) 70, 103, 140, 147
BstKTI GATC 4 cut(s) 30, 182, 232, 495
BstMAI GTCTC 2 cut(s) 160, 492
BstMBI GATC 4 cut(s) 27, 179, 229, 492
BstMWI GCNNNNNNNGC 2 cut(s) 46, 144
BstNI CCWGG 2 cut(s) 530, 543
BstSCI CCNGG 2 cut(s) 528, 541
BstSFI CTRYAG 1 cut(s) 389
BstSLI GKGCMC 1 cut(s) 349
BstUI CGCG 2 cut(s) 101, 147
BstV1I GCAGC 4 cut(s) 24, 36, 370, 456
BstX2I RGATCY 2 cut(s) 179, 229
BstYI RGATCY 2 cut(s) 179, 229
BsuI GTATCC 1 cut(s) 307
BsuRI GGCC 4 cut(s) 113, 223, 320, 442
BveI ACCTGC 1 cut(s) 275
Cac8I GCNNGC 4 cut(s) 72, 76, 221, 474
CfoI GCGC 4 cut(s) 70, 103, 140, 147
CseI GACGC 1 cut(s) 43
CsiI ACCWGGT 1 cut(s) 528
Csp6I GTAC 1 cut(s) 526
CviAII CATG 1 cut(s) 267
CviQI GTAC 1 cut(s) 526
DdeI CTNAG 1 cut(s) 447
DinI GGCGCC 1 cut(s) 139
DpnI GATC 4 cut(s) 29, 181, 231, 494
DpnII GATC 4 cut(s) 27, 179, 229, 492
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 175
Eco147I AGGCCT 2 cut(s) 113, 442
Eco31I GGTCTC 1 cut(s) 492
Eco32I GATATC 1 cut(s) 166
EcoRII CCWGG 2 cut(s) 528, 541
EcoRV GATATC 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 175
EgeI GGCGCC 1 cut(s) 139
EheI GGCGCC 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 175
Esp3I CGTCTC 1 cut(s) 160
FaeI CATG 1 cut(s) 270
FaiI YATR 6 cut(s) 193, 195, 268, 400, 413, 483
FatI CATG 1 cut(s) 266
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 5 cut(s) 38, 50, 250, 384, 470
Fsp4HI GCNGC 5 cut(s) 38, 50, 250, 384, 470
GlaI GCGC 4 cut(s) 69, 102, 139, 146
GluI GCNGC 5 cut(s) 38, 50, 250, 384, 470
HaeII RGCGCY 2 cut(s) 71, 141
HaeIII GGCC 4 cut(s) 113, 223, 320, 442
HapII CCGG 1 cut(s) 135
HgaI GACGC 1 cut(s) 43
HhaI GCGC 4 cut(s) 70, 103, 140, 147
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 1 cut(s) 270
Hin6I GCGC 4 cut(s) 68, 101, 138, 145
HinP1I GCGC 4 cut(s) 68, 101, 138, 145
HinfI GANTC 1 cut(s) 83
HpaII CCGG 1 cut(s) 135
Hpy166II GTNNAC 2 cut(s) 347, 526
Hpy188I TCNGA 3 cut(s) 27, 82, 492
Hpy188III TCNNGA 4 cut(s) 16, 31, 227, 446
Hpy8I GTNNAC 2 cut(s) 347, 526
Hpy99I CGWCG 2 cut(s) 64, 67
HpyAV CCTTC 2 cut(s) 100, 103
HpyCH4III ACNGT 1 cut(s) 336
HpyCH4V TGCA 5 cut(s) 191, 284, 347, 391, 560
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 144
HpyF3I CTNAG 1 cut(s) 447
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 1 cut(s) 270
HspAI GCGC 4 cut(s) 68, 101, 138, 145
KasI GGCGCC 1 cut(s) 137
Kzo9I GATC 4 cut(s) 27, 179, 229, 492
LguI GCTCTTC 1 cut(s) 59
Lsp1109I GCAGC 4 cut(s) 24, 36, 370, 456
LweI GCATC 1 cut(s) 271
MabI ACCWGGT 1 cut(s) 528
MalI GATC 4 cut(s) 29, 181, 231, 494
MboI GATC 4 cut(s) 27, 179, 229, 492
MboII GAAGA 3 cut(s) 46, 88, 463
MflI RGATCY 2 cut(s) 179, 229
MhlI GDGCHC 1 cut(s) 349
MluCI AATT 2 cut(s) 311, 455
Mly113I GGCGCC 1 cut(s) 138
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 9 cut(s) 33, 124, 128, 193, 234, 310, 388, 453, 459
MseI TTAA 1 cut(s) 583
MspA1I CMGCKG 2 cut(s) 249, 353
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 2 cut(s) 530, 543
Mva1269I GAATGC 1 cut(s) 369
MvaI CCWGG 2 cut(s) 530, 543
MvnI CGCG 2 cut(s) 101, 147
MwoI GCNNNNNNNGC 2 cut(s) 46, 144
NarI GGCGCC 1 cut(s) 138
NdeI CATATG 1 cut(s) 193
NdeII GATC 4 cut(s) 27, 179, 229, 492
NlaIII CATG 1 cut(s) 270
NlaIV GGNNCC 2 cut(s) 139, 181
NmeAIII GCCGAG 1 cut(s) 166
PaqCI CACCTGC 1 cut(s) 275
PceI AGGCCT 2 cut(s) 113, 442
PciSI GCTCTTC 1 cut(s) 59
PctI GAATGC 1 cut(s) 369
PflMI CCANNNNNTGG 1 cut(s) 267
PkrI GCNGC 5 cut(s) 39, 51, 251, 385, 471
PleI GAGTC 1 cut(s) 77
PluTI GGCGCC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 528, 541
PspGI CCWGG 2 cut(s) 528, 541
PspN4I GGNNCC 2 cut(s) 139, 181
PstI CTGCAG 1 cut(s) 393
PsuI RGATCY 2 cut(s) 179, 229
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 527
RsaNI GTAC 1 cut(s) 526
SapI GCTCTTC 1 cut(s) 59
SaqAI TTAA 1 cut(s) 583
SatI GCNGC 5 cut(s) 38, 50, 250, 384, 470
Sau3AI GATC 4 cut(s) 27, 179, 229, 492
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 530, 543
SduI GDGCHC 1 cut(s) 349
SetI ASST 5 cut(s) 80, 221, 289, 355, 531
SexAI ACCWGGT 1 cut(s) 528
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 389
SfoI GGCGCC 1 cut(s) 139
SmlI CTYRAG 2 cut(s) 128, 225
SmoI CTYRAG 2 cut(s) 128, 225
Sse9I AATT 2 cut(s) 311, 455
SseBI AGGCCT 2 cut(s) 113, 442
SsiI CCGC 2 cut(s) 249, 342
SspDI GGCGCC 1 cut(s) 137
StuI AGGCCT 2 cut(s) 113, 442
StyD4I CCNGG 2 cut(s) 528, 541
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 1 cut(s) 336
TasI AATT 2 cut(s) 311, 455
TauI GCSGC 1 cut(s) 252
Tru1I TTAA 1 cut(s) 583
Tru9I TTAA 1 cut(s) 583
TseI GCWGC 4 cut(s) 37, 49, 383, 469
TspDTI ATGAA 1 cut(s) 82
TspGWI ACGGA 1 cut(s) 142
Van91I CCANNNNNTGG 1 cut(s) 267
VneI GTGCAC 1 cut(s) 345
XapI RAATTY 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.