RchiOBHm_Chr3g0453551
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
3967406 .. 3971457
4052 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42063

Sequence Viewer

Length: 1407 bp
ATGGAAGGAGTTTCCTTGGAAGGAGAAACCATGGAAGCAGGACTACTGACTATGTCCAATGCCAATGGAGAGTCCTCCTCGGTCACCAGCGTTGTTCTTCTGGGCACTTTGGTCGCCCTCTGTGCTTCGCTCTCTACTGGCTGTGCTATAGGGTATTCATCAGCTGCAGAATCTGGAATTCTGGAAGACTTGGACCTTACGGTTGAAGCATACACTGTATTTGGTTCAATAATGACAGTTGGAGGAGTGATTGGTTCATTGGTAAATGGGAAGATAACAGATCTCATCGGTCGTAGAGGTACGATGTGGTTCTCTGCAATATTCAGTTCTGCAGGGTGGTTTAGTATAGCTTTTGCAAAGAATGCTTGGTGGCTGGACATTGGAAGATTGTCATTGGGATTCAGTGTTGGTATCATTTACTATGTGGTGCCTGTCTACATAGCAGAAATAACACCCAAGGATCTTCGAGGAAGGTTCACTTCAGCTAACCAGCTGCTGATTAGCTGTGGCTTTTCATTGTTCTTTTTGATTGGAAATGCTATACATTGGCGCACCATGGCTGTACTCGGTGTTATTCCATCCCTACTGCAAATTGTAGGTTTATTCTTCATTCCAGAGTCTCCAAGGTGGCTGGCTAAAGTTGGTAGACAAACAGACCTTGAAGCTGTGCTGCAGCGTCTTAGAGGAAGGAATGCTTCTGTTTCTCAAGAAGCAGCTGATATCATGGAGTATACAGAAATGTTTCAGAAAAACTCAGGAAGAATACTAGACTTGTTCCAGCGTAGATATACTCACTCACTGATTGTTGGAGTTGGGCTAATGTTACTACAGCAATTTTCTGGGGTCAATGCAGTAGCTTATTATGCAAGCAGTATATTTATAGATGCTGATTTTTCAAGTACCATTGGGACAGTATCATTGGCTATTATTGGGGTTCCAGCAATTGCATTGAGTGTGCTCTTAACAGATAAATGTGGAAGGCGACCACTTTTAAATGTTTCTGCTGCTGGAATGTGCTTGAGTTCATTTCTTATTGGCTTGGCTTTCTACTTCCAGGATCACAACTTGTGTGAGGAGCTCACTCCCATTTTTGTGTTTATCGGCATGATGGTTTATGGTGCATCGTACTCAATTGGTATAGCTGGATTGCCTTGGGTTATTATGTCAGAGACATTCCCAGTAAACATCAAAGGTTCAGCTGGGAGCCTGTTGAGTTTGGTATATTGGTCATGTTCTTGGATTATAACATATACCTTCAACTATGTGATGGAATGGAGCTCAGCAGGAACATTTTTCTTCTTCTCAGCCATTAGCATTTTGACAATTCTGTTCGTTACAAAGATAGTGCCGGAAACTAAGGGGAGAAATCTAGAAGAATTACAAGCATCAATCTCCCATTTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

468

Amino Acids

50.81

Weight (kDa)

5.35

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 40 - 413 9e-27 Major Facilitator Superfamily
Sugar_tr PF00083 68 - 461 9.4e-91 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1244
AccB1I GGYRCC 1 cut(s) 427
AccI GTMKAC 3 cut(s) 435, 646, 731
AclWI GGATC 2 cut(s) 468, 1065
AcsI RAATTY 1 cut(s) 177
AcuI CTGAAG 1 cut(s) 465
AfaI GTAC 4 cut(s) 301, 564, 901, 1127
AgsI TTSAA 5 cut(s) 206, 228, 662, 897, 1258
AjnI CCWGG 1 cut(s) 1053
Alw21I GWGCWC 3 cut(s) 960, 1080, 1280
Alw26I GTCTC 2 cut(s) 624, 1163
AlwI GGATC 2 cut(s) 468, 1065
AlwNI CAGNNNCTG 2 cut(s) 173, 496
ApeKI GCWGC 6 cut(s) 164, 493, 670, 673, 713, 1004
ApoI RAATTY 1 cut(s) 177
Asp700I GAANNNNTTC 1 cut(s) 741
AspLEI GCGC 1 cut(s) 552
AspS9I GGNCC 1 cut(s) 193
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 1 cut(s) 193
BaeGI GKGCMC 1 cut(s) 107
BanI GGYRCC 1 cut(s) 427
BanII GRGCYC 2 cut(s) 1080, 1280
BarI GAAGNNNNNNTAC 2 cut(s) 27, 59
BbsI GAAGAC 1 cut(s) 192
Bbv12I GWGCWC 3 cut(s) 960, 1080, 1280
BbvI GCAGC 6 cut(s) 151, 480, 657, 685, 725, 991
BccI CCATC 3 cut(s) 586, 1102, 1261
BcgI CGANNNNNNTGC 2 cut(s) 94, 128
BciT130I CCWGG 1 cut(s) 1055
BcoDI GTCTC 2 cut(s) 624, 1163
BfaI CTAG 2 cut(s) 767, 1370
BfmI CTRYAG 5 cut(s) 147, 165, 330, 671, 827
BglII AGATCT 1 cut(s) 280
BisI GCNGC 6 cut(s) 165, 494, 671, 674, 714, 1005
BlpI GCTNAGC 1 cut(s) 1279
BlsI GCNGC 6 cut(s) 166, 495, 672, 675, 715, 1006
Bme1390I CCNGG 1 cut(s) 1055
Bme18I GGWCC 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 3 cut(s) 429, 936, 1205
BmrFI CCNGG 1 cut(s) 1055
BmrI ACTGGG 1 cut(s) 1172
BmsI GCATC 3 cut(s) 874, 1130, 1394
BmuI ACTGGG 1 cut(s) 1172
BpiI GAAGAC 1 cut(s) 192
BplI GAGNNNNNCTC 2 cut(s) 62, 94
Bpu1102I GCTNAGC 1 cut(s) 1279
BpuEI CTTGAG 2 cut(s) 690, 1039
BsaJI CCNNGG 7 cut(s) 15, 30, 78, 456, 555, 623, 1151
Bse1I ACTGG 2 cut(s) 142, 1178
BseBI CCWGG 1 cut(s) 1055
BseDI CCNNGG 7 cut(s) 15, 30, 78, 456, 555, 623, 1151
BseGI GGATG 1 cut(s) 578
BseMII CTCAG 3 cut(s) 768, 1293, 1317
BseNI ACTGG 2 cut(s) 142, 1178
BseRI GAGGAG 3 cut(s) 67, 258, 1088
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 6 cut(s) 151, 480, 657, 685, 725, 991
BseYI CCCAGC 1 cut(s) 1199
Bsh1285I CGRYCG 1 cut(s) 292
BshNI GGYRCC 1 cut(s) 427
BsiEI CGRYCG 1 cut(s) 292
BsiHKAI GWGCWC 3 cut(s) 960, 1080, 1280
BsiSI CCGG 1 cut(s) 1349
BslFI GGGAC 1 cut(s) 922
BsmAI GTCTC 2 cut(s) 624, 1163
BsmFI GGGAC 1 cut(s) 922
BsmI GAATGC 2 cut(s) 367, 697
Bsp1286I GDGCHC 4 cut(s) 107, 960, 1080, 1280
Bsp143I GATC 3 cut(s) 280, 460, 1057
Bsp1720I GCTNAGC 1 cut(s) 1279
Bsp19I CCATGG 2 cut(s) 30, 555
BspCNI CTCAG 3 cut(s) 767, 1292, 1316
BspLI GGNNCC 3 cut(s) 429, 936, 1205
BspMAI CTGCAG 3 cut(s) 169, 334, 675
BspPI GGATC 2 cut(s) 468, 1065
BspT107I GGYRCC 1 cut(s) 427
BsrI ACTGG 2 cut(s) 142, 1178
BssECI CCNNGG 7 cut(s) 15, 30, 78, 456, 555, 623, 1151
BssMI GATC 3 cut(s) 280, 460, 1057
BssNAI GTATAC 1 cut(s) 732
BssT1I CCWWGG 6 cut(s) 15, 30, 456, 555, 623, 1151
Bst1107I GTATAC 1 cut(s) 732
Bst2UI CCWGG 1 cut(s) 1055
Bst4CI ACNGT 4 cut(s) 202, 217, 238, 913
BstAPI GCANNNNNTGC 1 cut(s) 362
BstC8I GCNNGC 2 cut(s) 633, 868
BstDEI CTNAG 5 cut(s) 680, 754, 1279, 1303, 1356
BstDSI CCRYGG 2 cut(s) 30, 555
BstEII GGTNACC 1 cut(s) 82
BstF5I GGATG 1 cut(s) 578
BstHHI GCGC 1 cut(s) 552
BstKTI GATC 3 cut(s) 283, 463, 1060
BstMAI GTCTC 2 cut(s) 624, 1163
BstMBI GATC 3 cut(s) 280, 460, 1057
BstMCI CGRYCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 3 cut(s) 122, 362, 863
BstNI CCWGG 1 cut(s) 1055
BstPI GGTNACC 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 1053
BstSFI CTRYAG 5 cut(s) 147, 165, 330, 671, 827
BstSLI GKGCMC 1 cut(s) 107
BstV1I GCAGC 6 cut(s) 151, 480, 657, 685, 725, 991
BstV2I GAAGAC 1 cut(s) 192
BstX2I RGATCY 2 cut(s) 280, 460
BstYI RGATCY 2 cut(s) 280, 460
BstZ17I GTATAC 1 cut(s) 732
BtgI CCRYGG 2 cut(s) 30, 555
BtsCI GGATG 1 cut(s) 578
BtsIMutI CAGTG 3 cut(s) 213, 409, 797
Cac8I GCNNGC 2 cut(s) 633, 868
CaiI CAGNNNCTG 2 cut(s) 173, 496
CfoI GCGC 1 cut(s) 552
Cfr13I GGNCC 1 cut(s) 193
CseI GACGC 1 cut(s) 665
Csp6I GTAC 4 cut(s) 300, 563, 900, 1126
CviAII CATG 5 cut(s) 31, 556, 724, 1105, 1230
CviQI GTAC 4 cut(s) 300, 563, 900, 1126
DdeI CTNAG 5 cut(s) 680, 754, 1279, 1303, 1356
DpnI GATC 3 cut(s) 282, 462, 1059
DpnII GATC 3 cut(s) 280, 460, 1057
DraI TTTAAA 1 cut(s) 993
Ecl136II GAGCTC 2 cut(s) 1078, 1278
Eco130I CCWWGG 6 cut(s) 15, 30, 456, 555, 623, 1151
Eco24I GRGCYC 2 cut(s) 1080, 1280
Eco32I GATATC 1 cut(s) 721
Eco47I GGWCC 1 cut(s) 193
Eco53kI GAGCTC 2 cut(s) 1078, 1278
Eco57I CTGAAG 1 cut(s) 465
Eco91I GGTNACC 1 cut(s) 82
EcoICRI GAGCTC 2 cut(s) 1078, 1278
EcoO65I GGTNACC 1 cut(s) 82
EcoRI GAATTC 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 1053
EcoRV GATATC 1 cut(s) 721
EcoT14I CCWWGG 6 cut(s) 15, 30, 456, 555, 623, 1151
EcoT38I GRGCYC 2 cut(s) 1080, 1280
ErhI CCWWGG 6 cut(s) 15, 30, 456, 555, 623, 1151
FaeI CATG 5 cut(s) 34, 559, 727, 1108, 1233
FalI AAGNNNNNCTT 4 cut(s) 463, 495, 679, 711
FaqI GGGAC 1 cut(s) 922
FatI CATG 5 cut(s) 30, 555, 723, 1104, 1229
FblI GTMKAC 3 cut(s) 435, 646, 731
Fnu4HI GCNGC 6 cut(s) 165, 494, 671, 674, 714, 1005
FokI GGATG 1 cut(s) 565
FriOI GRGCYC 2 cut(s) 1080, 1280
Fsp4HI GCNGC 6 cut(s) 165, 494, 671, 674, 714, 1005
FspBI CTAG 2 cut(s) 767, 1370
GlaI GCGC 1 cut(s) 551
GluI GCNGC 6 cut(s) 165, 494, 671, 674, 714, 1005
GsaI CCCAGC 1 cut(s) 1203
HapII CCGG 1 cut(s) 1349
HgaI GACGC 1 cut(s) 665
HhaI GCGC 1 cut(s) 552
Hin1II CATG 5 cut(s) 34, 559, 727, 1108, 1233
Hin6I GCGC 1 cut(s) 550
HinP1I GCGC 1 cut(s) 550
HinfI GANTC 4 cut(s) 71, 170, 399, 617
HpaII CCGG 1 cut(s) 1349
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 5 cut(s) 436, 477, 647, 732, 1183
Hpy188I TCNGA 2 cut(s) 747, 1168
Hpy188III TCNNGA 6 cut(s) 174, 182, 614, 707, 756, 1370
Hpy8I GTNNAC 5 cut(s) 436, 477, 647, 732, 1183
HpyAV CCTTC 5 cut(s) 14, 465, 681, 972, 1264
HpyCH4III ACNGT 4 cut(s) 202, 217, 238, 913
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 362, 863
HpyF3I CTNAG 5 cut(s) 680, 754, 1279, 1303, 1356
Hsp92II CATG 5 cut(s) 34, 559, 727, 1108, 1233
HspAI GCGC 1 cut(s) 550
Kzo9I GATC 3 cut(s) 280, 460, 1057
LmnI GCTCC 3 cut(s) 1075, 1203, 1275
Lsp1109I GCAGC 6 cut(s) 151, 480, 657, 685, 725, 991
LweI GCATC 3 cut(s) 874, 1130, 1394
MaeI CTAG 2 cut(s) 767, 1370
MaeIII GTNAC 3 cut(s) 82, 822, 1333
MalI GATC 3 cut(s) 282, 462, 1059
MboI GATC 3 cut(s) 280, 460, 1057
MfeI CAATTG 2 cut(s) 942, 1131
MflI RGATCY 2 cut(s) 280, 460
MhlI GDGCHC 4 cut(s) 107, 960, 1080, 1280
MluCI AATT 7 cut(s) 177, 591, 833, 942, 1131, 1323, 1376
MlyI GAGTC 2 cut(s) 80, 626
MmeI TCCRAC 2 cut(s) 220, 787
MnlI CCTC 8 cut(s) 85, 88, 128, 236, 290, 461, 677, 1066
MroXI GAANNNNTTC 1 cut(s) 741
MseI TTAA 3 cut(s) 962, 992, 1405
MslI CAYNNNNRTG 1 cut(s) 1091
MspA1I CMGCKG 4 cut(s) 164, 493, 716, 1199
MspI CCGG 1 cut(s) 1349
MspR9I CCNGG 1 cut(s) 1055
MunI CAATTG 2 cut(s) 942, 1131
Mva1269I GAATGC 2 cut(s) 367, 697
MvaI CCWGG 1 cut(s) 1055
MwoI GCNNNNNNNGC 3 cut(s) 122, 362, 863
NcoI CCATGG 2 cut(s) 30, 555
NdeII GATC 3 cut(s) 280, 460, 1057
NlaIII CATG 5 cut(s) 34, 559, 727, 1108, 1233
NlaIV GGNNCC 3 cut(s) 429, 936, 1205
NmuCI GTSAC 1 cut(s) 82
PctI GAATGC 2 cut(s) 367, 697
PdmI GAANNNNTTC 1 cut(s) 741
PfeI GAWTC 2 cut(s) 170, 399
PflFI GACNNNGTC 1 cut(s) 52
PfoI TCCNGGA 1 cut(s) 1053
PkrI GCNGC 6 cut(s) 166, 495, 672, 675, 715, 1006
PleI GAGTC 2 cut(s) 79, 625
PpsI GAGTC 2 cut(s) 79, 625
PsiI TTATAA 1 cut(s) 1244
Psp124BI GAGCTC 2 cut(s) 1080, 1280
Psp6I CCWGG 1 cut(s) 1053
PspEI GGTNACC 1 cut(s) 82
PspFI CCCAGC 1 cut(s) 1199
PspGI CCWGG 1 cut(s) 1053
PspN4I GGNNCC 3 cut(s) 429, 936, 1205
PspPI GGNCC 1 cut(s) 193
PstI CTGCAG 3 cut(s) 169, 334, 675
PstNI CAGNNNCTG 2 cut(s) 173, 496
PsuI RGATCY 2 cut(s) 280, 460
PsyI GACNNNGTC 1 cut(s) 52
PvuII CAGCTG 4 cut(s) 164, 493, 716, 1199
RsaI GTAC 4 cut(s) 301, 564, 901, 1127
RsaNI GTAC 4 cut(s) 300, 563, 900, 1126
RseI CAYNNNNRTG 1 cut(s) 1091
SacI GAGCTC 2 cut(s) 1080, 1280
SaqAI TTAA 3 cut(s) 962, 992, 1405
SatI GCNGC 6 cut(s) 165, 494, 671, 674, 714, 1005
Sau3AI GATC 3 cut(s) 280, 460, 1057
Sau96I GGNCC 1 cut(s) 193
SchI GAGTC 2 cut(s) 80, 626
ScrFI CCNGG 1 cut(s) 1055
SduI GDGCHC 4 cut(s) 107, 960, 1080, 1280
SfaNI GCATC 3 cut(s) 874, 1130, 1394
SfcI CTRYAG 5 cut(s) 147, 165, 330, 671, 827
SinI GGWCC 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 1091
SmlI CTYRAG 2 cut(s) 705, 1018
SmoI CTYRAG 2 cut(s) 705, 1018
Sse9I AATT 7 cut(s) 177, 591, 833, 942, 1131, 1323, 1376
SspI AATATT 1 cut(s) 321
SspMI CTAG 2 cut(s) 767, 1370
SstI GAGCTC 2 cut(s) 1080, 1280
StyD4I CCNGG 1 cut(s) 1053
StyI CCWWGG 6 cut(s) 15, 30, 456, 555, 623, 1151
TaaI ACNGT 4 cut(s) 202, 217, 238, 913
TaqI TCGA 1 cut(s) 466
TaqII GACCGA 2 cut(s) 70, 278
TasI AATT 7 cut(s) 177, 591, 833, 942, 1131, 1323, 1376
TatI WGTACW 1 cut(s) 562
TfiI GAWTC 2 cut(s) 170, 399
Tru1I TTAA 3 cut(s) 962, 992, 1405
Tru9I TTAA 3 cut(s) 962, 992, 1405
TscAI CASTG 3 cut(s) 220, 409, 804
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 6 cut(s) 164, 493, 670, 673, 713, 1004
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 6 cut(s) 147, 246, 504, 598, 1014, 1391
TspRI CASTG 3 cut(s) 220, 409, 804
Tth111I GACNNNGTC 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 1 cut(s) 177
XbaI TCTAGA 1 cut(s) 1369
XmiI GTMKAC 3 cut(s) 435, 646, 731
XmnI GAANNNNTTC 1 cut(s) 741
XspI CTAG 2 cut(s) 767, 1370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.