Rh3AG052800
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Forward (+)
3706499 .. 3710685
4187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG052800.1

Sequence Viewer

Length: 1056 bp
ATGCATTTGATAAAACGTCATCTCATCATACAGTACTCAGTTTTTGGTTCAATAATGACAATTGGAGGTGTCATTGGTTCATTGATGAATGGCAGAGTAACTGATCTCATCGGTCGTAGAGCTACAATGTGGTTGTCTGCAATATTCAGTACTGCAGGGTGGCTCACTATAGCATTTGCACAGAATGCTTTGTGGCTGGATATTGGAAGACTCTCAAGCGGATTTAGCGTCGGGATAATTTACTACGTGGTACCAGTGTACATAGCAGAAATAACGCCCAAGGACCTCAGAGGAAGATTCACTTCAGCTAATCAGTTGATGATTAGCTGTGGCTTTTCCTTATTCTATTTCATTGGAAATACCATAACCTGGCGCACCATGGCAGCAATCGGTGCTATTCCAGGTCTACTACAAATTCTAGGCATATTTTTCATTCCAGAGTCCCCAAGATGGCTGGCTAAAATTGGTAGACAAAAGGACCTTGAAGCTGTTCTGGAACGCCTTAGAGGAAAGAACGCTGACATATTTCAAGAAGCAGATGACATCATGGAGTATACAAAAATCTTTCAGCAGAAATCAGAGACATTGCTGGACTTGTTCCAGAAGATATATGCTCGCTCACTCATTGTTGGAGTTGGGCTACTGTTACTGCAGCAATTTGGGGGTGCAAATGCCGTAGCTTATTACGGAAGCTCTATATTTGAAGATGCCGGTTTTTCAAGTAGCATTGGGACTATTTCACTGGCTATTATCGGGATACCTGTTATTGCATTGAGTGTGCTCTTAACGGACAAATTGGGAAGACGACCACTTCTACTGGTTTCTGCTGCTGGAATGTGCTTGAGTTTGTTTCTTGTGGGCTTGGCTTTCTGCTTTCAGGACCTACACCAGTGGGAAGCGCTCACTCCCATTCTTGTGTTTATCGGCATGTTGGGTTATGGTGCATCATACTTGATTGGCATGGCAGGTTTACCCTGGGTTATTATGTCAGAGGTAGCTAGCACGTTCTTAAGCTTCATGTGTGCTTTCAGAACTAATTTATTTTCTGGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

351

Amino Acids

38.51

Weight (kDa)

8.86

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 10 - 335 6.8e-70 Sugar (and other) transporter
MFS_1 PF07690 11 - 319 2.2e-24 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 956
Acc65I GGTACC 1 cut(s) 250
AccB1I GGYRCC 1 cut(s) 250
AccB7I CCANNNNNTGG 1 cut(s) 369
AccI GTMKAC 3 cut(s) 406, 469, 554
AciI CCGC 1 cut(s) 219
AcsI RAATTY 2 cut(s) 414, 1050
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 4 cut(s) 35, 151, 252, 260
AfeI AGCGCT 1 cut(s) 900
AfiI CCNNNNNNNGG 2 cut(s) 369, 450
AflII CTTAAG 1 cut(s) 1009
AgsI TTSAA 5 cut(s) 51, 485, 530, 704, 720
AjnI CCWGG 3 cut(s) 368, 400, 974
AluBI AGCT 8 cut(s) 122, 308, 327, 488, 680, 693, 998, 1014
AluI AGCT 8 cut(s) 122, 308, 327, 488, 680, 693, 998, 1014
Alw21I GWGCWC 1 cut(s) 783
Alw26I GTCTC 1 cut(s) 575
Aor51HI AGCGCT 1 cut(s) 900
ApeKI GCWGC 3 cut(s) 383, 652, 827
ApoI RAATTY 2 cut(s) 414, 1050
Asp700I GAANNNNTTC 1 cut(s) 489
Asp718I GGTACC 1 cut(s) 250
AspLEI GCGC 2 cut(s) 375, 901
AspS9I GGNCC 3 cut(s) 283, 478, 880
AsuNHI GCTAGC 1 cut(s) 998
AvaII GGWCC 3 cut(s) 283, 478, 880
BaeI ACNNNNGTAYC 2 cut(s) 242, 275
BanI GGYRCC 1 cut(s) 250
BbsI GAAGAC 2 cut(s) 214, 808
Bbv12I GWGCWC 1 cut(s) 783
BbvI GCAGC 3 cut(s) 395, 664, 814
BccI CCATC 1 cut(s) 444
BceAI ACGGC 1 cut(s) 659
BciT130I CCWGG 3 cut(s) 370, 402, 976
BciVI GTATCC 1 cut(s) 750
BcoDI GTCTC 1 cut(s) 575
BfaI CTAG 2 cut(s) 419, 999
BfmI CTRYAG 3 cut(s) 153, 168, 650
BfoI RGCGCY 1 cut(s) 902
BfrI CTTAAG 1 cut(s) 1009
BfuAI ACCTGC 1 cut(s) 956
BfuI GTATCC 1 cut(s) 750
BisI GCNGC 3 cut(s) 384, 653, 828
BlsI GCNGC 3 cut(s) 385, 654, 829
BmcAI AGTACT 2 cut(s) 35, 151
Bme1390I CCNGG 3 cut(s) 370, 402, 976
Bme18I GGWCC 3 cut(s) 283, 478, 880
BmgT120I GGNCC 3 cut(s) 283, 478, 880
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 3 cut(s) 370, 402, 976
BmsI GCATC 2 cut(s) 697, 953
BmtI GCTAGC 1 cut(s) 1002
BpiI GAAGAC 2 cut(s) 214, 808
BpuEI CTTGAG 2 cut(s) 199, 862
BsaAI YACGTR 1 cut(s) 247
BsaJI CCNNGG 4 cut(s) 279, 378, 974, 975
Bsc4I CCNNNNNNNGG 2 cut(s) 369, 450
Bse118I RCCGGY 1 cut(s) 710
Bse1I ACTGG 4 cut(s) 254, 747, 822, 889
Bse3DI GCAATG 1 cut(s) 584
BseBI CCWGG 3 cut(s) 370, 402, 976
BseDI CCNNGG 4 cut(s) 279, 378, 974, 975
BseLI CCNNNNNNNGG 2 cut(s) 369, 450
BseMI GCAATG 1 cut(s) 584
BseMII CTCAG 2 cut(s) 51, 301
BseNI ACTGG 4 cut(s) 254, 747, 822, 889
BseXI GCAGC 3 cut(s) 395, 664, 814
Bsh1285I CGRYCG 1 cut(s) 115
BshNI GGYRCC 1 cut(s) 250
BsiEI CGRYCG 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 783
BsiSI CCGG 1 cut(s) 711
BslFI GGGAC 2 cut(s) 427, 745
BslI CCNNNNNNNGG 2 cut(s) 369, 450
BsmAI GTCTC 1 cut(s) 575
BsmFI GGGAC 2 cut(s) 427, 745
BsmI GAATGC 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 783
Bsp1407I TGTACA 1 cut(s) 258
Bsp143I GATC 1 cut(s) 103
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 1 cut(s) 219
BspCNI CTCAG 2 cut(s) 50, 300
BspLI GGNNCC 1 cut(s) 252
BspMAI CTGCAG 2 cut(s) 157, 654
BspMI ACCTGC 1 cut(s) 956
BspOI GCTAGC 1 cut(s) 1002
BspT107I GGYRCC 1 cut(s) 250
BspTI CTTAAG 1 cut(s) 1009
BsrDI GCAATG 1 cut(s) 584
BsrFI RCCGGY 1 cut(s) 710
BsrGI TGTACA 1 cut(s) 258
BsrI ACTGG 4 cut(s) 254, 747, 822, 889
BssAI RCCGGY 1 cut(s) 710
BssECI CCNNGG 4 cut(s) 279, 378, 974, 975
BssMI GATC 1 cut(s) 103
BssNAI GTATAC 1 cut(s) 555
BssT1I CCWWGG 2 cut(s) 279, 378
Bst1107I GTATAC 1 cut(s) 555
Bst2UI CCWGG 3 cut(s) 370, 402, 976
Bst4CI ACNGT 2 cut(s) 33, 645
BstAFI CTTAAG 1 cut(s) 1009
BstAPI GCANNNNNTGC 2 cut(s) 185, 392
BstAUI TGTACA 1 cut(s) 258
BstBAI YACGTR 1 cut(s) 247
BstC8I GCNNGC 3 cut(s) 456, 616, 1000
BstDEI CTNAG 3 cut(s) 37, 287, 503
BstDSI CCRYGG 1 cut(s) 378
BstH2I RGCGCY 1 cut(s) 902
BstHHI GCGC 2 cut(s) 375, 901
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 575
BstMBI GATC 1 cut(s) 103
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 3 cut(s) 185, 225, 392
BstNI CCWGG 3 cut(s) 370, 402, 976
BstNSI RCATGY 1 cut(s) 931
BstSCI CCNGG 3 cut(s) 368, 400, 974
BstSFI CTRYAG 3 cut(s) 153, 168, 650
BstV1I GCAGC 3 cut(s) 395, 664, 814
BstV2I GAAGAC 2 cut(s) 214, 808
BstZ17I GTATAC 1 cut(s) 555
BsuI GTATCC 1 cut(s) 750
BtgI CCRYGG 1 cut(s) 378
BtsIMutI CAGTG 3 cut(s) 261, 740, 896
BveI ACCTGC 1 cut(s) 956
Cac8I GCNNGC 3 cut(s) 456, 616, 1000
CfoI GCGC 2 cut(s) 375, 901
Cfr10I RCCGGY 1 cut(s) 710
Cfr13I GGNCC 3 cut(s) 283, 478, 880
CseI GACGC 1 cut(s) 217
Csp6I GTAC 4 cut(s) 34, 150, 251, 259
CviAII CATG 5 cut(s) 379, 547, 928, 961, 1018
CviQI GTAC 4 cut(s) 34, 150, 251, 259
DdeI CTNAG 3 cut(s) 37, 287, 503
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eco130I CCWWGG 2 cut(s) 279, 378
Eco47I GGWCC 3 cut(s) 283, 478, 880
Eco47III AGCGCT 1 cut(s) 900
Eco57I CTGAAG 1 cut(s) 288
EcoO109I RGGNCCY 3 cut(s) 283, 478, 880
EcoRII CCWGG 3 cut(s) 368, 400, 974
EcoT14I CCWWGG 2 cut(s) 279, 378
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 279, 378
FaeI CATG 5 cut(s) 382, 550, 931, 964, 1021
FalI AAGNNNNNCTT 2 cut(s) 286, 318
FaqI GGGAC 2 cut(s) 427, 745
FatI CATG 5 cut(s) 378, 546, 927, 960, 1017
FblI GTMKAC 3 cut(s) 406, 469, 554
Fnu4HI GCNGC 3 cut(s) 384, 653, 828
Fsp4HI GCNGC 3 cut(s) 384, 653, 828
FspBI CTAG 2 cut(s) 419, 999
GlaI GCGC 2 cut(s) 374, 900
GluI GCNGC 3 cut(s) 384, 653, 828
HaeII RGCGCY 1 cut(s) 902
HapII CCGG 1 cut(s) 711
HgaI GACGC 1 cut(s) 217
HhaI GCGC 2 cut(s) 375, 901
Hin1II CATG 5 cut(s) 382, 550, 931, 964, 1021
Hin6I GCGC 2 cut(s) 373, 899
HinP1I GCGC 2 cut(s) 373, 899
HindIII AAGCTT 1 cut(s) 1012
HinfI GANTC 3 cut(s) 210, 297, 440
HpaII CCGG 1 cut(s) 711
Hpy166II GTNNAC 5 cut(s) 259, 407, 470, 555, 971
Hpy188I TCNGA 4 cut(s) 290, 580, 991, 1031
Hpy188III TCNNGA 8 cut(s) 232, 437, 494, 530, 601, 754, 878, 1047
Hpy8I GTNNAC 5 cut(s) 259, 407, 470, 555, 971
Hpy99I CGWCG 1 cut(s) 233
HpyCH4III ACNGT 2 cut(s) 33, 645
HpyCH4IV ACGT 3 cut(s) 16, 246, 1004
HpyCH4V TGCA 8 cut(s) 4, 140, 155, 179, 652, 668, 770, 944
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 225, 392
HpyF3I CTNAG 3 cut(s) 37, 287, 503
HpySE526I ACGT 3 cut(s) 16, 246, 1004
Hsp92II CATG 5 cut(s) 382, 550, 931, 964, 1021
HspAI GCGC 2 cut(s) 373, 899
KpnI GGTACC 1 cut(s) 254
Kzo9I GATC 1 cut(s) 103
Lsp1109I GCAGC 3 cut(s) 395, 664, 814
LweI GCATC 2 cut(s) 697, 953
MaeI CTAG 2 cut(s) 419, 999
MaeII ACGT 3 cut(s) 16, 246, 1004
MaeIII GTNAC 2 cut(s) 97, 645
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 5 cut(s) 219, 306, 616, 716, 813
MfeI CAATTG 1 cut(s) 60
MhlI GDGCHC 1 cut(s) 783
MluCI AATT 8 cut(s) 60, 237, 414, 462, 656, 794, 1036, 1050
MlyI GAGTC 2 cut(s) 204, 449
MmeI TCCRAC 1 cut(s) 610
MnlI CCTC 5 cut(s) 59, 284, 296, 500, 985
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 489
MseI TTAA 2 cut(s) 785, 1010
MslI CAYNNNNRTG 1 cut(s) 914
MspCI CTTAAG 1 cut(s) 1009
MspI CCGG 1 cut(s) 711
MspR9I CCNGG 3 cut(s) 370, 402, 976
MunI CAATTG 1 cut(s) 60
Mva1269I GAATGC 1 cut(s) 190
MvaI CCWGG 3 cut(s) 370, 402, 976
MwoI GCNNNNNNNGC 3 cut(s) 185, 225, 392
NcoI CCATGG 1 cut(s) 378
NdeII GATC 1 cut(s) 103
NheI GCTAGC 1 cut(s) 998
NlaIII CATG 5 cut(s) 382, 550, 931, 964, 1021
NlaIV GGNNCC 1 cut(s) 252
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 931
PasI CCCWGGG 1 cut(s) 975
PctI GAATGC 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 489
PfeI GAWTC 1 cut(s) 297
PflMI CCANNNNNTGG 1 cut(s) 369
PkrI GCNGC 3 cut(s) 385, 654, 829
PleI GAGTC 2 cut(s) 204, 448
PpsI GAGTC 2 cut(s) 204, 448
Ppu21I YACGTR 1 cut(s) 247
PpuMI RGGWCCY 3 cut(s) 283, 478, 880
Psp5II RGGWCCY 3 cut(s) 283, 478, 880
Psp6I CCWGG 3 cut(s) 368, 400, 974
PspGI CCWGG 3 cut(s) 368, 400, 974
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 3 cut(s) 283, 478, 880
PspPPI RGGWCCY 3 cut(s) 283, 478, 880
PstI CTGCAG 2 cut(s) 157, 654
RsaI GTAC 4 cut(s) 35, 151, 252, 260
RsaNI GTAC 4 cut(s) 34, 150, 251, 259
RseI CAYNNNNRTG 1 cut(s) 914
SaqAI TTAA 2 cut(s) 785, 1010
SatI GCNGC 3 cut(s) 384, 653, 828
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 3 cut(s) 283, 478, 880
ScaI AGTACT 2 cut(s) 35, 151
SchI GAGTC 2 cut(s) 204, 449
ScrFI CCNGG 3 cut(s) 370, 402, 976
SduI GDGCHC 1 cut(s) 783
SfaNI GCATC 2 cut(s) 697, 953
SfcI CTRYAG 3 cut(s) 153, 168, 650
SinI GGWCC 3 cut(s) 283, 478, 880
SmiMI CAYNNNNRTG 1 cut(s) 914
SmlI CTYRAG 3 cut(s) 214, 841, 1009
SmoI CTYRAG 3 cut(s) 214, 841, 1009
Sse9I AATT 8 cut(s) 60, 237, 414, 462, 656, 794, 1036, 1050
SsiI CCGC 1 cut(s) 219
SspI AATATT 1 cut(s) 144
SspMI CTAG 2 cut(s) 419, 999
StyD4I CCNGG 3 cut(s) 368, 400, 974
StyI CCWWGG 2 cut(s) 279, 378
TaaI ACNGT 2 cut(s) 33, 645
TaiI ACGT 3 cut(s) 19, 249, 1007
TaqII GACCGA 1 cut(s) 101
TasI AATT 8 cut(s) 60, 237, 414, 462, 656, 794, 1036, 1050
TatI WGTACW 3 cut(s) 33, 149, 258
TfiI GAWTC 1 cut(s) 297
Tru1I TTAA 2 cut(s) 785, 1010
Tru9I TTAA 2 cut(s) 785, 1010
TscAI CASTG 3 cut(s) 261, 747, 896
TseI GCWGC 3 cut(s) 383, 652, 827
TspDTI ATGAA 5 cut(s) 69, 101, 340, 421, 1006
TspGWI ACGGA 2 cut(s) 702, 803
TspRI CASTG 3 cut(s) 261, 747, 896
Van91I CCANNNNNTGG 1 cut(s) 369
Vha464I CTTAAG 1 cut(s) 1009
VpaK11BI GGWCC 3 cut(s) 283, 478, 880
XapI RAATTY 2 cut(s) 414, 1050
XceI RCATGY 1 cut(s) 931
XmiI GTMKAC 3 cut(s) 406, 469, 554
XmnI GAANNNNTTC 1 cut(s) 489
XspI CTAG 2 cut(s) 419, 999
ZrmI AGTACT 2 cut(s) 35, 151
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.