pycom12g21080
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000401
Physical Location & Seq
Reverse (-)
22337855 .. 22339258
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g21080.4

Sequence Viewer

Length: 615 bp
ATGCCGAAGAAAAGTTTCAGATTCTTTGCGAAGTTCTCTATCTGCATTTTGACAAACTTTCTTCTCCTTACGCAGTACTCAGTTTTCGGTTCAATACTGACAGTAGGAGGAATGATTGGTGGATTACTAAATGGAAAAATGGCGGATATGATCGGTCGTAGGGGTAATGCTTGGTGGCTGGATACTGGACGACTGTCAGTGGGATTTGGCATCGGGATAATTATGTACGTGGTACCTGTCTACATATCAGAAATAACACCTAAGGATCTCCGAGGAACATTTACTTCAGCTAATCAGTTTTTCATTAGCTGCGGTTTTTCGCTGTTCTATTTCATTGGAAACGCCCTACCCTGGCGCACCATTGCAGTAATCGGTGCAATTCCAACTCTACTACAAATTATAGGTTTATTTTTCATCCCAGAGTCTCCAAGGTGGCTGGCCAAAGTTGGTAAACAAGAAGACCTTGAAGCCACTCTGCAGCGTCTTAGAGGAACGAAGGCTTCTGTATCACAAGAAGCAGCTGATATCATGGATTATACAGAAATGTTTCAGCAGCACTCAGAAAGTATGCTAGACTTGTTCCATAAGAGATATGCTGACTCGCTCATCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

205

Amino Acids

22.86

Weight (kDa)

9.14

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 232
AccB1I GGYRCC 1 cut(s) 232
AccI GTMKAC 1 cut(s) 240
AciI CCGC 2 cut(s) 143, 312
AclWI GGATC 1 cut(s) 273
AcoI YGGCCR 1 cut(s) 438
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 3 cut(s) 77, 227, 234
AfiI CCNNNNNNNGG 1 cut(s) 351
AgsI TTSAA 2 cut(s) 93, 467
AjnI CCWGG 1 cut(s) 350
AluBI AGCT 3 cut(s) 290, 309, 521
AluI AGCT 3 cut(s) 290, 309, 521
Alw26I GTCTC 1 cut(s) 429
AlwI GGATC 1 cut(s) 273
AoxI GGCC 1 cut(s) 438
ApeKI GCWGC 4 cut(s) 309, 478, 518, 553
Asp700I GAANNNNTTC 2 cut(s) 14, 546
Asp718I GGTACC 1 cut(s) 232
AspLEI GCGC 1 cut(s) 357
AxyI CCTNAGG 1 cut(s) 261
BalI TGGCCA 1 cut(s) 440
BanI GGYRCC 1 cut(s) 232
BbsI GAAGAC 1 cut(s) 465
BbvI GCAGC 4 cut(s) 296, 490, 530, 565
BciT130I CCWGG 1 cut(s) 352
BciVI GTATCC 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 429
BfaI CTAG 1 cut(s) 572
BfmI CTRYAG 1 cut(s) 476
BfuI GTATCC 1 cut(s) 175
BisI GCNGC 4 cut(s) 310, 479, 519, 554
BlsI GCNGC 4 cut(s) 311, 480, 520, 555
BmcAI AGTACT 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 352
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 352
BmsI GCATC 1 cut(s) 219
BoxI GACNNNNGTC 1 cut(s) 193
BpiI GAAGAC 1 cut(s) 465
BsaAI YACGTR 1 cut(s) 229
BsaJI CCNNGG 3 cut(s) 271, 350, 428
Bsc4I CCNNNNNNNGG 1 cut(s) 351
Bse1I ACTGG 1 cut(s) 190
Bse21I CCTNAGG 1 cut(s) 261
Bse3DI GCAATG 1 cut(s) 360
BseBI CCWGG 1 cut(s) 352
BseDI CCNNGG 3 cut(s) 271, 350, 428
BseGI GGATG 1 cut(s) 414
BseLI CCNNNNNNNGG 1 cut(s) 351
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 2 cut(s) 93, 573
BseNI ACTGG 1 cut(s) 190
BseXI GCAGC 4 cut(s) 296, 490, 530, 565
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 1 cut(s) 440
BshNI GGYRCC 1 cut(s) 232
BsiEI CGRYCG 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 351
BsmAI GTCTC 1 cut(s) 429
BsnI GGCC 1 cut(s) 440
Bsp143I GATC 2 cut(s) 150, 265
BspACI CCGC 2 cut(s) 143, 312
BspANI GGCC 1 cut(s) 440
BspCNI CTCAG 2 cut(s) 92, 572
BspLI GGNNCC 1 cut(s) 234
BspMAI CTGCAG 1 cut(s) 480
BspPI GGATC 1 cut(s) 273
BspT107I GGYRCC 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 360
BsrI ACTGG 1 cut(s) 190
BssECI CCNNGG 3 cut(s) 271, 350, 428
BssMI GATC 2 cut(s) 150, 265
BssT1I CCWWGG 1 cut(s) 428
Bst2UI CCWGG 1 cut(s) 352
Bst4CI ACNGT 2 cut(s) 103, 195
BstBAI YACGTR 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 438
BstDEI CTNAG 4 cut(s) 79, 261, 485, 559
BstF5I GGATG 1 cut(s) 414
BstHHI GCGC 1 cut(s) 357
BstKTI GATC 2 cut(s) 153, 268
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 2 cut(s) 150, 265
BstMCI CGRYCG 1 cut(s) 157
BstNI CCWGG 1 cut(s) 352
BstPAI GACNNNNGTC 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 350
BstSFI CTRYAG 1 cut(s) 476
BstV1I GCAGC 4 cut(s) 296, 490, 530, 565
BstV2I GAAGAC 1 cut(s) 465
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
Bsu36I CCTNAGG 1 cut(s) 261
BsuI GTATCC 1 cut(s) 175
BsuRI GGCC 1 cut(s) 440
BtsCI GGATG 1 cut(s) 414
BtsIMutI CAGTG 1 cut(s) 204
Cac8I GCNNGC 1 cut(s) 438
CfoI GCGC 1 cut(s) 357
CseI GACGC 1 cut(s) 470
Csp6I GTAC 3 cut(s) 76, 226, 233
CviAII CATG 1 cut(s) 529
CviJI RGCY 8 cut(s) 178, 290, 309, 436, 440, 470, 500, 521
CviKI_1 RGCY 8 cut(s) 178, 290, 309, 436, 440, 470, 500, 521
CviQI GTAC 3 cut(s) 76, 226, 233
DdeI CTNAG 4 cut(s) 79, 261, 485, 559
DpnI GATC 2 cut(s) 152, 267
DpnII GATC 2 cut(s) 150, 265
EaeI YGGCCR 1 cut(s) 438
EciI GGCGGA 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 428
Eco32I GATATC 1 cut(s) 526
Eco57I CTGAAG 1 cut(s) 270
Eco81I CCTNAGG 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 350
EcoRV GATATC 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 428
ErhI CCWWGG 1 cut(s) 428
FaeI CATG 1 cut(s) 532
FalI AAGNNNNNCTT 2 cut(s) 447, 479
FatI CATG 1 cut(s) 528
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 4 cut(s) 310, 479, 519, 554
FokI GGATG 1 cut(s) 401
Fsp4HI GCNGC 4 cut(s) 310, 479, 519, 554
FspBI CTAG 1 cut(s) 572
GlaI GCGC 1 cut(s) 356
GluI GCNGC 4 cut(s) 310, 479, 519, 554
HaeIII GGCC 1 cut(s) 440
HgaI GACGC 1 cut(s) 470
HhaI GCGC 1 cut(s) 357
Hin1II CATG 1 cut(s) 532
Hin6I GCGC 1 cut(s) 355
HinP1I GCGC 1 cut(s) 355
HinfI GANTC 3 cut(s) 21, 422, 599
Hpy166II GTNNAC 2 cut(s) 241, 452
Hpy188I TCNGA 4 cut(s) 20, 250, 272, 562
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 2 cut(s) 241, 452
HpyAV CCTTC 1 cut(s) 490
HpyCH4III ACNGT 2 cut(s) 103, 195
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 4 cut(s) 45, 365, 377, 478
HpyF3I CTNAG 4 cut(s) 79, 261, 485, 559
HpySE526I ACGT 1 cut(s) 228
Hsp92II CATG 1 cut(s) 532
HspAI GCGC 1 cut(s) 355
KpnI GGTACC 1 cut(s) 236
Kzo9I GATC 2 cut(s) 150, 265
LpnPI CCDG 7 cut(s) 164, 171, 249, 337, 364, 422, 432
Lsp1109I GCAGC 4 cut(s) 296, 490, 530, 565
LweI GCATC 1 cut(s) 219
MaeI CTAG 1 cut(s) 572
MaeII ACGT 1 cut(s) 228
MalI GATC 2 cut(s) 152, 267
MboI GATC 2 cut(s) 150, 265
MboII GAAGA 3 cut(s) 19, 53, 470
MflI RGATCY 1 cut(s) 265
MlsI TGGCCA 1 cut(s) 440
MluCI AATT 3 cut(s) 219, 378, 396
MluNI TGGCCA 1 cut(s) 440
MlyI GAGTC 2 cut(s) 431, 593
MmeI TCCRAC 1 cut(s) 407
MnlI CCTC 3 cut(s) 101, 266, 482
Mox20I TGGCCA 1 cut(s) 440
MroXI GAANNNNTTC 2 cut(s) 14, 546
MscI TGGCCA 1 cut(s) 440
Msp20I TGGCCA 1 cut(s) 440
MspA1I CMGCKG 1 cut(s) 521
MspR9I CCNGG 1 cut(s) 352
MvaI CCWGG 1 cut(s) 352
NdeII GATC 2 cut(s) 150, 265
NlaIII CATG 1 cut(s) 532
NlaIV GGNNCC 1 cut(s) 234
PdmI GAANNNNTTC 2 cut(s) 14, 546
PfeI GAWTC 1 cut(s) 21
PkrI GCNGC 4 cut(s) 311, 480, 520, 555
PleI GAGTC 2 cut(s) 430, 593
PpsI GAGTC 2 cut(s) 430, 593
Ppu21I YACGTR 1 cut(s) 229
PshAI GACNNNNGTC 1 cut(s) 193
Psp6I CCWGG 1 cut(s) 350
PspGI CCWGG 1 cut(s) 350
PspN4I GGNNCC 1 cut(s) 234
PstI CTGCAG 1 cut(s) 480
PsuI RGATCY 1 cut(s) 265
PvuII CAGCTG 1 cut(s) 521
RsaI GTAC 3 cut(s) 77, 227, 234
RsaNI GTAC 3 cut(s) 76, 226, 233
SatI GCNGC 4 cut(s) 310, 479, 519, 554
Sau3AI GATC 2 cut(s) 150, 265
ScaI AGTACT 1 cut(s) 77
SchI GAGTC 2 cut(s) 431, 593
ScrFI CCNGG 1 cut(s) 352
SetI ASST 9 cut(s) 231, 238, 262, 292, 311, 406, 434, 465, 523
SfaNI GCATC 1 cut(s) 219
SfcI CTRYAG 1 cut(s) 476
Sse9I AATT 3 cut(s) 219, 378, 396
SsiI CCGC 2 cut(s) 143, 312
SspMI CTAG 1 cut(s) 572
StyD4I CCNGG 1 cut(s) 350
StyI CCWWGG 1 cut(s) 428
TaaI ACNGT 2 cut(s) 103, 195
TaiI ACGT 1 cut(s) 231
TaqII GACCGA 1 cut(s) 143
TasI AATT 3 cut(s) 219, 378, 396
TatI WGTACW 1 cut(s) 75
TfiI GAWTC 1 cut(s) 21
TscAI CASTG 1 cut(s) 204
TseI GCWGC 4 cut(s) 309, 478, 518, 553
TspDTI ATGAA 3 cut(s) 292, 322, 403
TspRI CASTG 1 cut(s) 204
XmiI GTMKAC 1 cut(s) 240
XmnI GAANNNNTTC 2 cut(s) 14, 546
XspI CTAG 1 cut(s) 572
ZrmI AGTACT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.