Rmu_sc0003556.1_g000001
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003556.1
Physical Location & Seq
Reverse (-)
1120 .. 3698
2579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003556.1_g000001.1.cds

Sequence Viewer

Length: 966 bp
atgatgggtgcagtaataaatgggaagataaccgatcttattggtcgtagaggtacaatgtggctgtctgaaacattcagtgttgcaggatggctcaccatagcatttgcacagaatgcttggtggcttgatttaggacggttgtcagtgggatttggcgttggtctaatttgctacgtggtacctgtatacatagcagaaataacacccaaggatcttagaggaagatttacttcagctactcagttgatgtgtagttgcggcttagcactagcctttttccttggaaatgtcataacctggcggaccttggcggttatcggtgccattccatctcttgtacacattataggcctattttttattccagagtctccaaggtggctggccaaaattggtaggcacaaggaatttgaagcggctcttcagcgactgagaggaaagcatgccgacatatctcaagaagcagctgaaataatgcattatacagaaatgtttcagcagcagtcagaaaaagttctagacttgttccaaaagagatatgcttactcactcattgttggagttgggctcttgtcactgcaaccatttgtgggtgccaatgcagtatcatattatgcaagttctatatttgtagatgcaggtttttcaagtaccattgggactatatcattgtctctcattgggattcctggtgttgcgttgagtgtgctcttaacagacaaagtcggaagacgaccacttctactgatttctgctggcggattgtgcttgagtacccttcttgtgggtttggcattcttctttcaggacatcaacttctggaaggagctcactcctattttggtctacatcggcttattgggtcaaagtctatcatacacaacaggcatggcaggattaccctgggttattatgtcagaggtgagtgactttgaccctgagaaagaatatggtctgtcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

321

Amino Acids

35.11

Weight (kDa)

6.9

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 632
Acc65I GGTACC 1 cut(s) 181
AccB1I GGYRCC 3 cut(s) 181, 323, 596
AccI GTMKAC 2 cut(s) 189, 849
AciI CCGC 5 cut(s) 261, 304, 314, 419, 762
AclWI GGATC 1 cut(s) 222
AcoI YGGCCR 1 cut(s) 387
AcsI RAATTY 1 cut(s) 410
AcuI CTGAAG 2 cut(s) 219, 410
AfaI GTAC 5 cut(s) 55, 183, 342, 655, 778
AfiI CCNNNNNNNGG 2 cut(s) 593, 787
AgsI TTSAA 2 cut(s) 416, 651
AjnI CCWGG 3 cut(s) 299, 691, 905
AluBI AGCT 3 cut(s) 239, 470, 832
AluI AGCT 3 cut(s) 239, 470, 832
Alw21I GWGCWC 2 cut(s) 714, 834
Alw26I GTCTC 2 cut(s) 378, 681
AlwI GGATC 1 cut(s) 222
AlwNI CAGNNNCTG 1 cut(s) 433
AoxI GGCC 2 cut(s) 352, 387
ApeKI GCWGC 2 cut(s) 467, 502
ApoI RAATTY 1 cut(s) 410
Asp700I GAANNNNTTC 2 cut(s) 495, 516
Asp718I GGTACC 1 cut(s) 181
AspS9I GGNCC 1 cut(s) 306
AsuHPI GGTGA 2 cut(s) 88, 937
AvaII GGWCC 1 cut(s) 306
BalI TGGCCA 1 cut(s) 389
BanI GGYRCC 3 cut(s) 181, 323, 596
BanII GRGCYC 2 cut(s) 573, 834
BbsI GAAGAC 1 cut(s) 739
Bbv12I GWGCWC 2 cut(s) 714, 834
BbvI GCAGC 2 cut(s) 479, 514
BccI CCATC 2 cut(s) 84, 340
BciT130I CCWGG 3 cut(s) 301, 693, 907
BcoDI GTCTC 2 cut(s) 378, 681
BfaI CTAG 2 cut(s) 272, 521
BfuAI ACCTGC 1 cut(s) 632
BisI GCNGC 4 cut(s) 262, 420, 468, 503
BlpI GCTNAGC 1 cut(s) 265
BlsI GCNGC 4 cut(s) 263, 421, 469, 504
Bme1390I CCNGG 3 cut(s) 301, 693, 907
Bme18I GGWCC 1 cut(s) 306
BmgT120I GGNCC 1 cut(s) 306
BmiI GGNNCC 3 cut(s) 183, 325, 598
BmrFI CCNGG 3 cut(s) 301, 693, 907
BmsI GCATC 1 cut(s) 628
BoxI GACNNNNGTC 1 cut(s) 142
BpiI GAAGAC 1 cut(s) 739
BplI GAGNNNNNCTC 2 cut(s) 555, 587
Bpu1102I GCTNAGC 1 cut(s) 265
BpuEI CTTGAG 2 cut(s) 444, 793
BsaAI YACGTR 1 cut(s) 178
BsaJI CCNNGG 6 cut(s) 210, 283, 309, 377, 905, 906
Bsc4I CCNNNNNNNGG 2 cut(s) 593, 787
BseBI CCWGG 3 cut(s) 301, 693, 907
BseDI CCNNGG 6 cut(s) 210, 283, 309, 377, 905, 906
BseGI GGATG 1 cut(s) 95
BseLI CCNNNNNNNGG 2 cut(s) 593, 787
BseMII CTCAG 3 cut(s) 257, 425, 933
BseXI GCAGC 2 cut(s) 479, 514
BsgI GTGCAG 1 cut(s) 30
BshFI GGCC 2 cut(s) 354, 389
BshNI GGYRCC 3 cut(s) 181, 323, 596
BsiHKAI GWGCWC 2 cut(s) 714, 834
BslFI GGGAC 1 cut(s) 676
BslI CCNNNNNNNGG 2 cut(s) 593, 787
BsmAI GTCTC 2 cut(s) 378, 681
BsmFI GGGAC 1 cut(s) 676
BsmI GAATGC 2 cut(s) 121, 797
BsnI GGCC 2 cut(s) 354, 389
Bsp1286I GDGCHC 3 cut(s) 573, 714, 834
Bsp1407I TGTACA 1 cut(s) 340
Bsp143I GATC 2 cut(s) 34, 214
Bsp1720I GCTNAGC 1 cut(s) 265
BspACI CCGC 5 cut(s) 261, 304, 314, 419, 762
BspANI GGCC 2 cut(s) 354, 389
BspCNI CTCAG 3 cut(s) 256, 426, 934
BspLI GGNNCC 3 cut(s) 183, 325, 598
BspMI ACCTGC 1 cut(s) 632
BspPI GGATC 1 cut(s) 222
BspQI GCTCTTC 1 cut(s) 429
BspT107I GGYRCC 3 cut(s) 181, 323, 596
BsrGI TGTACA 1 cut(s) 340
BssECI CCNNGG 6 cut(s) 210, 283, 309, 377, 905, 906
BssMI GATC 2 cut(s) 34, 214
BssNAI GTATAC 1 cut(s) 190
BssT1I CCWWGG 4 cut(s) 210, 283, 309, 377
Bst1107I GTATAC 1 cut(s) 190
Bst2UI CCWGG 3 cut(s) 301, 693, 907
Bst4CI ACNGT 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 429
BstAPI GCANNNNNTGC 1 cut(s) 116
BstAUI TGTACA 1 cut(s) 340
BstBAI YACGTR 1 cut(s) 178
BstC8I GCNNGC 3 cut(s) 387, 447, 760
BstDEI CTNAG 5 cut(s) 218, 243, 265, 434, 942
BstF5I GGATG 1 cut(s) 95
BstKTI GATC 2 cut(s) 37, 217
BstMAI GTCTC 2 cut(s) 378, 681
BstMBI GATC 2 cut(s) 34, 214
BstMWI GCNNNNNNNGC 2 cut(s) 116, 768
BstNI CCWGG 3 cut(s) 301, 693, 907
BstNSI RCATGY 1 cut(s) 449
BstPAI GACNNNNGTC 1 cut(s) 142
BstSCI CCNGG 3 cut(s) 299, 691, 905
BstV1I GCAGC 2 cut(s) 479, 514
BstV2I GAAGAC 1 cut(s) 739
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BstZ17I GTATAC 1 cut(s) 190
BsuRI GGCC 2 cut(s) 354, 389
BtsCI GGATG 1 cut(s) 95
BtsI GCAGTG 1 cut(s) 578
BtsIMutI CAGTG 3 cut(s) 85, 153, 578
BveI ACCTGC 1 cut(s) 632
Cac8I GCNNGC 3 cut(s) 387, 447, 760
CaiI CAGNNNCTG 1 cut(s) 433
Cfr13I GGNCC 1 cut(s) 306
Csp6I GTAC 5 cut(s) 54, 182, 341, 654, 777
CviAII CATG 2 cut(s) 446, 892
CviQI GTAC 5 cut(s) 54, 182, 341, 654, 777
DdeI CTNAG 5 cut(s) 218, 243, 265, 434, 942
DpnI GATC 2 cut(s) 36, 216
DpnII GATC 2 cut(s) 34, 214
EaeI YGGCCR 1 cut(s) 387
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
EciI GGCGGA 2 cut(s) 319, 777
Ecl136II GAGCTC 1 cut(s) 832
Eco130I CCWWGG 4 cut(s) 210, 283, 309, 377
Eco147I AGGCCT 1 cut(s) 354
Eco24I GRGCYC 2 cut(s) 573, 834
Eco47I GGWCC 1 cut(s) 306
Eco53kI GAGCTC 1 cut(s) 832
Eco57I CTGAAG 2 cut(s) 219, 410
EcoICRI GAGCTC 1 cut(s) 832
EcoRII CCWGG 3 cut(s) 299, 691, 905
EcoT14I CCWWGG 4 cut(s) 210, 283, 309, 377
EcoT22I ATGCAT 1 cut(s) 483
EcoT38I GRGCYC 2 cut(s) 573, 834
ErhI CCWWGG 4 cut(s) 210, 283, 309, 377
FaeI CATG 2 cut(s) 449, 895
FalI AAGNNNNNCTT 4 cut(s) 217, 249, 408, 440
FaqI GGGAC 1 cut(s) 676
FatI CATG 2 cut(s) 445, 891
FblI GTMKAC 2 cut(s) 189, 849
Fnu4HI GCNGC 4 cut(s) 262, 420, 468, 503
FokI GGATG 1 cut(s) 102
FriOI GRGCYC 2 cut(s) 573, 834
Fsp4HI GCNGC 4 cut(s) 262, 420, 468, 503
FspBI CTAG 2 cut(s) 272, 521
GluI GCNGC 4 cut(s) 262, 420, 468, 503
HaeIII GGCC 2 cut(s) 354, 389
Hin1II CATG 2 cut(s) 449, 895
HinfI GANTC 2 cut(s) 371, 688
HphI GGTGA 2 cut(s) 88, 937
Hpy166II GTNNAC 3 cut(s) 190, 343, 850
Hpy188I TCNGA 4 cut(s) 70, 511, 731, 922
Hpy188III TCNNGA 5 cut(s) 368, 461, 521, 809, 823
Hpy8I GTNNAC 3 cut(s) 190, 343, 850
HpyAV CCTTC 2 cut(s) 791, 820
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 8 cut(s) 11, 86, 110, 481, 583, 605, 620, 641
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 768
HpyF3I CTNAG 5 cut(s) 218, 243, 265, 434, 942
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 2 cut(s) 449, 895
KpnI GGTACC 1 cut(s) 185
Kzo9I GATC 2 cut(s) 34, 214
LguI GCTCTTC 1 cut(s) 429
LmnI GCTCC 1 cut(s) 829
Lsp1109I GCAGC 2 cut(s) 479, 514
LweI GCATC 1 cut(s) 628
MaeI CTAG 2 cut(s) 272, 521
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 576, 929
MalI GATC 2 cut(s) 36, 216
MboI GATC 2 cut(s) 34, 214
MboII GAAGA 5 cut(s) 37, 237, 416, 744, 793
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 3 cut(s) 573, 714, 834
MlsI TGGCCA 1 cut(s) 389
MluCI AATT 3 cut(s) 168, 393, 410
MluNI TGGCCA 1 cut(s) 389
MlyI GAGTC 1 cut(s) 380
MmeI TCCRAC 2 cut(s) 541, 709
MnlI CCTC 4 cut(s) 44, 215, 431, 916
Mox20I TGGCCA 1 cut(s) 389
Mph1103I ATGCAT 1 cut(s) 483
MroXI GAANNNNTTC 2 cut(s) 495, 516
MscI TGGCCA 1 cut(s) 389
MseI TTAA 1 cut(s) 716
Msp20I TGGCCA 1 cut(s) 389
MspA1I CMGCKG 1 cut(s) 470
MspR9I CCNGG 3 cut(s) 301, 693, 907
Mva1269I GAATGC 2 cut(s) 121, 797
MvaI CCWGG 3 cut(s) 301, 693, 907
MwoI GCNNNNNNNGC 2 cut(s) 116, 768
NdeII GATC 2 cut(s) 34, 214
NlaIII CATG 2 cut(s) 449, 895
NlaIV GGNNCC 3 cut(s) 183, 325, 598
NmuCI GTSAC 2 cut(s) 576, 929
NsiI ATGCAT 1 cut(s) 483
NspI RCATGY 1 cut(s) 449
PaeI GCATGC 1 cut(s) 449
PasI CCCWGGG 1 cut(s) 906
PceI AGGCCT 1 cut(s) 354
PciSI GCTCTTC 1 cut(s) 429
PctI GAATGC 2 cut(s) 121, 797
PdmI GAANNNNTTC 2 cut(s) 495, 516
PfeI GAWTC 1 cut(s) 688
PflFI GACNNNGTC 1 cut(s) 725
PkrI GCNGC 4 cut(s) 263, 421, 469, 504
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
Ppu21I YACGTR 1 cut(s) 178
PshAI GACNNNNGTC 1 cut(s) 142
Psp124BI GAGCTC 1 cut(s) 834
Psp6I CCWGG 3 cut(s) 299, 691, 905
PspGI CCWGG 3 cut(s) 299, 691, 905
PspN4I GGNNCC 3 cut(s) 183, 325, 598
PspPI GGNCC 1 cut(s) 306
PstNI CAGNNNCTG 1 cut(s) 433
PsuI RGATCY 1 cut(s) 214
PsyI GACNNNGTC 1 cut(s) 725
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 5 cut(s) 55, 183, 342, 655, 778
RsaNI GTAC 5 cut(s) 54, 182, 341, 654, 777
SacI GAGCTC 1 cut(s) 834
SapI GCTCTTC 1 cut(s) 429
SaqAI TTAA 1 cut(s) 716
SatI GCNGC 4 cut(s) 262, 420, 468, 503
Sau3AI GATC 2 cut(s) 34, 214
Sau96I GGNCC 1 cut(s) 306
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 3 cut(s) 301, 693, 907
SduI GDGCHC 3 cut(s) 573, 714, 834
SfaNI GCATC 1 cut(s) 628
SinI GGWCC 1 cut(s) 306
SmlI CTYRAG 2 cut(s) 459, 772
SmoI CTYRAG 2 cut(s) 459, 772
SphI GCATGC 1 cut(s) 449
Sse9I AATT 3 cut(s) 168, 393, 410
SseBI AGGCCT 1 cut(s) 354
SsiI CCGC 5 cut(s) 261, 304, 314, 419, 762
SspMI CTAG 2 cut(s) 272, 521
SstI GAGCTC 1 cut(s) 834
StuI AGGCCT 1 cut(s) 354
StyD4I CCNGG 3 cut(s) 299, 691, 905
StyI CCWWGG 4 cut(s) 210, 283, 309, 377
TaaI ACNGT 1 cut(s) 141
TaiI ACGT 1 cut(s) 180
TasI AATT 3 cut(s) 168, 393, 410
TatI WGTACW 1 cut(s) 340
TauI GCSGC 2 cut(s) 264, 422
TfiI GAWTC 1 cut(s) 688
Tru1I TTAA 1 cut(s) 716
Tru9I TTAA 1 cut(s) 716
TscAI CASTG 3 cut(s) 85, 153, 585
TseFI GTSAC 2 cut(s) 576, 929
TseI GCWGC 2 cut(s) 467, 502
Tsp45I GTSAC 2 cut(s) 576, 929
TspRI CASTG 3 cut(s) 85, 153, 585
Tth111I GACNNNGTC 1 cut(s) 725
VpaK11BI GGWCC 1 cut(s) 306
XapI RAATTY 1 cut(s) 410
XbaI TCTAGA 1 cut(s) 520
XceI RCATGY 1 cut(s) 449
XmiI GTMKAC 2 cut(s) 189, 849
XmnI GAANNNNTTC 2 cut(s) 495, 516
XspI CTAG 2 cut(s) 272, 521
Zsp2I ATGCAT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.