RchiOBHm_Chr3g0453591

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000401
Physical Location & Seq
Forward (+)
4003729 .. 4005352
1624 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42067

Sequence Viewer

Length: 354 bp
ATGGAAGAAGGGTTACTAATGGCAGGGTCAAAGTCCAATATTAATGCAGCTTCAGGTGAATGCAGTGACTTCATGAACCCAAGTGGGTCCTCCTCAGCCACCCCTGTTGTGGTCCTGAGCACATTGGTGGCTCTCTGTGGTGCCTTTGGCTATGGCTGTGCTATAGGATATTCATCCTCTGCTGAATCAGGAATTCTGGAAGACTTGGGCCTTACTGTTGCAGAATACTCTGTTTTTGGTTCAATAATGACAATTGGAGGAATGATGGGTGCAGTGATAAATGGGAAGATAACCGATCTTATTGGTCGTAGAGGTGTAAGTCATTGCATTACTTTTTATAATTGGGGATGCTAA

Protein Analysis

117

Amino Acids

11.91

Weight (kDa)

4.44

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 339
AccB1I GGYRCC 1 cut(s) 140
AcsI RAATTY 1 cut(s) 192
AcuI CTGAAG 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 1 cut(s) 243
AleI CACNNNNGTG 1 cut(s) 125
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw21I GWGCWC 1 cut(s) 122
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 192
AseI ATTAAT 1 cut(s) 42
AspS9I GGNCC 3 cut(s) 87, 112, 208
AsuHPI GGTGA 1 cut(s) 68
AvaII GGWCC 2 cut(s) 87, 112
BanI GGYRCC 1 cut(s) 140
BarI GAAGNNNNNNTAC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 122
BbvCI CCTCAGC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 59
BccI CCATC 1 cut(s) 259
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme18I GGWCC 2 cut(s) 87, 112
BmgT120I GGNCC 3 cut(s) 87, 112, 208
BmiI GGNNCC 2 cut(s) 88, 142
BmsI GCATC 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 207
Bpu10I CCTNAGC 2 cut(s) 94, 116
BsaBI GATNNNNATC 1 cut(s) 172
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 322
Bse8I GATNNNNATC 1 cut(s) 172
BseGI GGATG 2 cut(s) 173, 353
BseJI GATNNNNATC 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMI GCAATG 1 cut(s) 322
BseMII CTCAG 2 cut(s) 107, 108
BseRI GAGGAG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 59
BsgI GTGCAG 1 cut(s) 291
BshFI GGCC 1 cut(s) 210
BshNI GGYRCC 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 109
BsmI GAATGC 1 cut(s) 65
BsnI GGCC 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 1 cut(s) 295
BspANI GGCC 1 cut(s) 210
BspCNI CTCAG 2 cut(s) 107, 108
BspHI TCATGA 1 cut(s) 72
BspLI GGNNCC 2 cut(s) 88, 142
BspT107I GGYRCC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 322
BssMI GATC 1 cut(s) 295
Bst4CI ACNGT 1 cut(s) 217
BstDEI CTNAG 2 cut(s) 94, 116
BstF5I GGATG 2 cut(s) 173, 353
BstKTI GATC 1 cut(s) 298
BstMBI GATC 1 cut(s) 295
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 59
BstV2I GAAGAC 1 cut(s) 207
BsuRI GGCC 1 cut(s) 210
BtsCI GGATG 2 cut(s) 173, 353
BtsI GCAGTG 2 cut(s) 70, 279
BtsIMutI CAGTG 2 cut(s) 70, 279
CciI TCATGA 1 cut(s) 72
Cfr13I GGNCC 3 cut(s) 87, 112, 208
CspCI CAANNNNNGTGG 2 cut(s) 88, 123
CviAII CATG 1 cut(s) 73
CviJI RGCY 6 cut(s) 50, 98, 131, 150, 156, 210
CviKI_1 RGCY 6 cut(s) 50, 98, 131, 150, 156, 210
DdeI CTNAG 2 cut(s) 94, 116
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
Eco47I GGWCC 2 cut(s) 87, 112
Eco57I CTGAAG 1 cut(s) 36
EcoO109I RGGNCCY 1 cut(s) 87
EcoRI GAATTC 1 cut(s) 192
FaeI CATG 1 cut(s) 76
FaiI YATR 4 cut(s) 74, 153, 164, 339
FatI CATG 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
HaeIII GGCC 1 cut(s) 210
Hin1II CATG 1 cut(s) 76
HinfI GANTC 1 cut(s) 185
HphI GGTGA 1 cut(s) 68
Hpy188III TCNNGA 4 cut(s) 73, 115, 189, 197
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 5 cut(s) 47, 63, 221, 272, 327
HpyF3I CTNAG 2 cut(s) 94, 116
Hsp92II CATG 1 cut(s) 76
Kzo9I GATC 1 cut(s) 295
LpnPI CCDG 6 cut(s) 9, 39, 117, 128, 174, 182
Lsp1109I GCAGC 1 cut(s) 59
LweI GCATC 1 cut(s) 338
MaeIII GTNAC 2 cut(s) 12, 65
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 3 cut(s) 17, 212, 298
MfeI CAATTG 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 3 cut(s) 192, 252, 340
MnlI CCTC 5 cut(s) 100, 103, 187, 251, 305
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 125
MunI CAATTG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 65
NdeII GATC 1 cut(s) 295
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 2 cut(s) 88, 142
NmuCI GTSAC 1 cut(s) 65
OliI CACNNNNGTG 1 cut(s) 125
PagI TCATGA 1 cut(s) 72
PctI GAATGC 1 cut(s) 65
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 1 cut(s) 49
PpuMI RGGWCCY 1 cut(s) 87
PshBI ATTAAT 1 cut(s) 42
PsiI TTATAA 1 cut(s) 339
Psp5II RGGWCCY 1 cut(s) 87
PspN4I GGNNCC 2 cut(s) 88, 142
PspPI GGNCC 3 cut(s) 87, 112, 208
PspPPI RGGWCCY 1 cut(s) 87
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 3 cut(s) 87, 112, 208
SduI GDGCHC 1 cut(s) 122
SetI ASST 3 cut(s) 52, 58, 316
SfaNI GCATC 1 cut(s) 338
SfcI CTRYAG 1 cut(s) 162
SgeI CNNG 9 cut(s) 36, 66, 85, 93, 116, 127, 201, 209, 217
SinI GGWCC 2 cut(s) 87, 112
SmiMI CAYNNNNRTG 1 cut(s) 125
Sse9I AATT 3 cut(s) 192, 252, 340
SspI AATATT 1 cut(s) 40
TaaI ACNGT 1 cut(s) 217
TasI AATT 3 cut(s) 192, 252, 340
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 2 cut(s) 70, 279
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 3 cut(s) 61, 89, 162
TspRI CASTG 2 cut(s) 70, 279
VpaK11BI GGWCC 2 cut(s) 87, 112
VspI ATTAAT 1 cut(s) 42
XapI RAATTY 1 cut(s) 192
XcmI CCANNNNNNNNNTGG 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.