Rorug02G0650200
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000401
Physical Location & Seq
Reverse (-)
75878250 .. 75880002
1753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0650200.1

Sequence Viewer

Length: 1155 bp
ATGAACAACAGCAACCAAGAATCTCAACCACAACCACCTATGTACCCCTCCATTCCTCCTCCTCTCACAGCACACGAAGCAAACCCTTTTCTTCAATCTCATCCTACTCCCGCCCCAGAAGATATCAATCCATTTTCTCAAACCACTTCCCCACCAGAAGCCCCAAAACCTCAAACCCCCTCCATTACTGCCGACCACTTAGAAAAATGGCAACCTGCTCCTCATGATCATGATCATCATCATCAAGATATTCCATCATCTTCATCTGAGCAAGTACCAGTAGCAGCAGCACCACCACCCACCTTTGACAGCGAAGATCTCAAAGCCAAGGCCGCGGCGGAGGCAGAGCCTGAGAAATGGGGCACTCACGTCATGGGACACCCGGCTGTCCCAACTTGCCACCCGGACAACAAAAAGGCAGCTCTATGGGGAGTTGCCGCCGATGGTACAGAAAAAGCTCAGAGCTTCCACTATCCGTACCTCCAGTACCAACCCGTTGATCACAACAACAAGGCCAGCAGCTCCAGCAATCCCACTCAATCTATGCTCAATGTCTTCAACTCCTGGAGCCACAAAGCCGAGTCCATGGCCAACAACATCTGGCACAACCTTAAAACAGGGACATCTGTGTCCGGAGCAGCGTGGGCGAAGATGAACCTGCAGGCGAAAGCATTAACAGGAGGTGGATTTGAGGCTATCTACAAGCAGACATTTGCGACTTATCCCAACGAGAAGCTCCACAAATCATTCGCCTGTTATCTCTCCACATCCACCGGACCAGTCGCCGGAACTCTTTACCAGTCCAATATTCACACAGCTTTTTGCAGCGACCGGCCATTGTCATTCACTGCACCTTCCGGTCAGGTGACTTGGAGCTATTACAAGGTTATGGTGCCGCTGGCAAATGTTGCGACTATCAATCCAGTGGTGATGAGGGAGAACCCGACTGAGAAGTACCTCCAGATTGTGACCATTGACGGCCATGATTTCTGGTTCATGGGGTTTGTTAATTATGAAAAAGCATCCAAACATCTTACTCAGAGTATCTCCACTTTCGTAGCGTCTGGATTTGCAGTCCAACCTCCCCCATATGGAAAGCATGCTGGCGCTGAACATGATCATGATCATGATCTCAAGAAGGGGGGTGACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

384

Amino Acids

42.03

Weight (kDa)

6.2

Isoelectric Point (pI)

56.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAM PF02893 235 - 347 2.6e-12 GRAM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 628
Acc36I ACCTGC 2 cut(s) 223, 666
AccB1I GGYRCC 1 cut(s) 892
AccII CGCG 1 cut(s) 335
AccIII TCCGGA 1 cut(s) 632
AciI CCGC 6 cut(s) 111, 333, 335, 338, 438, 896
AcoI YGGCCR 3 cut(s) 588, 833, 979
AfaI GTAC 6 cut(s) 44, 276, 448, 479, 488, 956
AfiI CCNNNNNNNGG 2 cut(s) 785, 1091
AgsI TTSAA 2 cut(s) 95, 559
AjiI CACGTC 1 cut(s) 370
AjnI CCWGG 1 cut(s) 563
AluBI AGCT 7 cut(s) 422, 458, 465, 522, 736, 818, 876
AluI AGCT 7 cut(s) 422, 458, 465, 522, 736, 818, 876
AlwNI CAGNNNCTG 1 cut(s) 350
Aor13HI TCCGGA 1 cut(s) 632
AoxI GGCC 5 cut(s) 330, 513, 588, 833, 979
ApeKI GCWGC 6 cut(s) 284, 287, 419, 519, 638, 825
AspLEI GCGC 1 cut(s) 1109
AspS9I GGNCC 1 cut(s) 776
AsuC2I CCSGG 2 cut(s) 383, 404
AsuHPI GGTGA 2 cut(s) 877, 940
AvaII GGWCC 1 cut(s) 776
BaeGI GKGCMC 1 cut(s) 365
BaeI ACNNNNGTAYC 2 cut(s) 26, 59
BalI TGGCCA 1 cut(s) 590
BanI GGYRCC 1 cut(s) 892
BbsI GAAGAC 1 cut(s) 547
BbvI GCAGC 6 cut(s) 296, 299, 431, 531, 650, 837
BccI CCATC 2 cut(s) 262, 437
BceAI ACGGC 1 cut(s) 994
BciT130I CCWGG 1 cut(s) 565
BclI TGATCA 5 cut(s) 226, 232, 499, 1117, 1123
BcnI CCSGG 2 cut(s) 383, 404
BfmI CTRYAG 1 cut(s) 659
BfoI RGCGCY 1 cut(s) 1110
BfuAI ACCTGC 2 cut(s) 223, 666
BglII AGATCT 1 cut(s) 316
Bme1390I CCNGG 3 cut(s) 383, 404, 565
Bme18I GGWCC 1 cut(s) 776
BmgBI CACGTC 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 776
BmiI GGNNCC 2 cut(s) 569, 894
BmrFI CCNGG 3 cut(s) 383, 404, 565
BmsI GCATC 1 cut(s) 1031
BpiI GAAGAC 1 cut(s) 547
BpmI CTGGAG 4 cut(s) 467, 508, 586, 944
BpuEI CTTGAG 1 cut(s) 1118
BpuMI CCSGG 2 cut(s) 383, 404
BsaBI GATNNNNATC 5 cut(s) 126, 231, 237, 1122, 1128
BsaJI CCNNGG 3 cut(s) 327, 333, 585
BsaWI WCCGGW 3 cut(s) 632, 773, 857
Bsc4I CCNNNNNNNGG 2 cut(s) 785, 1091
Bse118I RCCGGY 1 cut(s) 831
Bse1I ACTGG 5 cut(s) 278, 484, 779, 799, 923
Bse8I GATNNNNATC 5 cut(s) 126, 231, 237, 1122, 1128
BseAI TCCGGA 1 cut(s) 632
BseBI CCWGG 1 cut(s) 565
BseDI CCNNGG 3 cut(s) 327, 333, 585
BseGI GGATG 3 cut(s) 100, 767, 1022
BseJI GATNNNNATC 5 cut(s) 126, 231, 237, 1122, 1128
BseLI CCNNNNNNNGG 2 cut(s) 785, 1091
BseMII CTCAG 5 cut(s) 258, 342, 473, 939, 1052
BseNI ACTGG 5 cut(s) 278, 484, 779, 799, 923
BseRI GAGGAG 3 cut(s) 48, 51, 210
BseSI GKGCMC 1 cut(s) 365
BseXI GCAGC 6 cut(s) 296, 299, 431, 531, 650, 837
BsgI GTGCAG 1 cut(s) 834
Bsh1236I CGCG 1 cut(s) 335
Bsh1285I CGRYCG 1 cut(s) 832
BshFI GGCC 5 cut(s) 332, 515, 590, 835, 981
BshNI GGYRCC 1 cut(s) 892
BsiEI CGRYCG 1 cut(s) 832
BsiSI CCGG 7 cut(s) 383, 404, 633, 774, 786, 832, 858
BslFI GGGAC 3 cut(s) 374, 390, 634
BslI CCNNNNNNNGG 2 cut(s) 785, 1091
BsmFI GGGAC 3 cut(s) 374, 390, 634
BsnI GGCC 5 cut(s) 332, 515, 590, 835, 981
Bsp1286I GDGCHC 1 cut(s) 365
Bsp13I TCCGGA 1 cut(s) 632
Bsp143I GATC 7 cut(s) 226, 232, 316, 499, 1117, 1123, 1129
Bsp19I CCATGG 1 cut(s) 585
BspACI CCGC 6 cut(s) 111, 333, 335, 338, 438, 896
BspANI GGCC 5 cut(s) 332, 515, 590, 835, 981
BspCNI CTCAG 5 cut(s) 259, 343, 472, 940, 1051
BspEI TCCGGA 1 cut(s) 632
BspFNI CGCG 1 cut(s) 335
BspHI TCATGA 4 cut(s) 223, 229, 1120, 1126
BspLI GGNNCC 2 cut(s) 569, 894
BspMAI CTGCAG 1 cut(s) 663
BspMI ACCTGC 2 cut(s) 223, 666
BspT107I GGYRCC 1 cut(s) 892
BsrFI RCCGGY 1 cut(s) 831
BsrI ACTGG 5 cut(s) 278, 484, 779, 799, 923
BssAI RCCGGY 1 cut(s) 831
BssECI CCNNGG 3 cut(s) 327, 333, 585
BssMI GATC 7 cut(s) 226, 232, 316, 499, 1117, 1123, 1129
BssT1I CCWWGG 2 cut(s) 327, 585
Bst2UI CCWGG 1 cut(s) 565
BstAPI GCANNNNNTGC 1 cut(s) 908
BstC8I GCNNGC 5 cut(s) 517, 663, 900, 1101, 1105
BstDEI CTNAG 6 cut(s) 199, 267, 351, 459, 948, 1038
BstDSI CCRYGG 2 cut(s) 333, 585
BstF5I GGATG 3 cut(s) 100, 767, 1022
BstFNI CGCG 1 cut(s) 335
BstH2I RGCGCY 1 cut(s) 1110
BstHHI GCGC 1 cut(s) 1109
BstKTI GATC 7 cut(s) 229, 235, 319, 502, 1120, 1126, 1132
BstMBI GATC 7 cut(s) 226, 232, 316, 499, 1117, 1123, 1129
BstMCI CGRYCG 1 cut(s) 832
BstMWI GCNNNNNNNGC 6 cut(s) 77, 332, 341, 525, 644, 908
BstNI CCWGG 1 cut(s) 565
BstNSI RCATGY 1 cut(s) 1103
BstSCI CCNGG 3 cut(s) 381, 402, 563
BstSFI CTRYAG 1 cut(s) 659
BstSLI GKGCMC 1 cut(s) 365
BstUI CGCG 1 cut(s) 335
BstV1I GCAGC 6 cut(s) 296, 299, 431, 531, 650, 837
BstV2I GAAGAC 1 cut(s) 547
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BsuRI GGCC 5 cut(s) 332, 515, 590, 835, 981
BtgI CCRYGG 2 cut(s) 333, 585
BtrI CACGTC 1 cut(s) 370
BtsCI GGATG 3 cut(s) 100, 767, 1022
BtsI GCAGTG 1 cut(s) 846
BtsIMutI CAGTG 2 cut(s) 846, 930
BveI ACCTGC 2 cut(s) 223, 666
Cac8I GCNNGC 5 cut(s) 517, 663, 900, 1101, 1105
CaiI CAGNNNCTG 1 cut(s) 350
CciI TCATGA 4 cut(s) 223, 229, 1120, 1126
CfoI GCGC 1 cut(s) 1109
Cfr10I RCCGGY 1 cut(s) 831
Cfr13I GGNCC 1 cut(s) 776
Cfr42I CCGCGG 1 cut(s) 336
CseI GACGC 1 cut(s) 1050
Csp6I GTAC 6 cut(s) 43, 275, 447, 478, 487, 955
CviQI GTAC 6 cut(s) 43, 275, 447, 478, 487, 955
DdeI CTNAG 6 cut(s) 199, 267, 351, 459, 948, 1038
DpnI GATC 7 cut(s) 228, 234, 318, 501, 1119, 1125, 1131
DpnII GATC 7 cut(s) 226, 232, 316, 499, 1117, 1123, 1129
DrdI GACNNNNNNGTC 1 cut(s) 628
DseDI GACNNNNNNGTC 1 cut(s) 628
EaeI YGGCCR 3 cut(s) 588, 833, 979
EciI GGCGGA 1 cut(s) 353
Eco130I CCWWGG 2 cut(s) 327, 585
Eco32I GATATC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 776
EcoRII CCWGG 1 cut(s) 563
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 2 cut(s) 327, 585
ErhI CCWWGG 2 cut(s) 327, 585
FaqI GGGAC 3 cut(s) 374, 390, 634
FauI CCCGC 1 cut(s) 118
FauNDI CATATG 1 cut(s) 1090
FbaI TGATCA 5 cut(s) 226, 232, 499, 1117, 1123
FokI GGATG 3 cut(s) 87, 754, 1009
GlaI GCGC 1 cut(s) 1108
GsuI CTGGAG 4 cut(s) 467, 508, 586, 944
HaeII RGCGCY 1 cut(s) 1110
HaeIII GGCC 5 cut(s) 332, 515, 590, 835, 981
HapII CCGG 7 cut(s) 383, 404, 633, 774, 786, 832, 858
HgaI GACGC 1 cut(s) 1050
HhaI GCGC 1 cut(s) 1109
Hin6I GCGC 1 cut(s) 1107
HinP1I GCGC 1 cut(s) 1107
HinfI GANTC 2 cut(s) 20, 581
HpaII CCGG 7 cut(s) 383, 404, 633, 774, 786, 832, 858
HphI GGTGA 2 cut(s) 877, 940
Hpy188I TCNGA 3 cut(s) 268, 462, 1041
Hpy188III TCNNGA 9 cut(s) 224, 230, 245, 633, 961, 1065, 1121, 1127, 1135
HpyAV CCTTC 2 cut(s) 864, 1132
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 4 cut(s) 661, 825, 851, 1073
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 332, 341, 525, 644, 908
HpyF3I CTNAG 6 cut(s) 199, 267, 351, 459, 948, 1038
HpySE526I ACGT 1 cut(s) 369
HspAI GCGC 1 cut(s) 1107
Kpn2I TCCGGA 1 cut(s) 632
Ksp22I TGATCA 5 cut(s) 226, 232, 499, 1117, 1123
KspI CCGCGG 1 cut(s) 336
Kzo9I GATC 7 cut(s) 226, 232, 316, 499, 1117, 1123, 1129
LmnI GCTCC 6 cut(s) 223, 527, 567, 635, 741, 873
Lsp1109I GCAGC 6 cut(s) 296, 299, 431, 531, 650, 837
LweI GCATC 1 cut(s) 1031
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 3 cut(s) 865, 967, 1145
MalI GATC 7 cut(s) 228, 234, 318, 501, 1119, 1125, 1131
MboI GATC 7 cut(s) 226, 232, 316, 499, 1117, 1123, 1129
MboII GAAGA 6 cut(s) 83, 131, 252, 326, 547, 661
MflI RGATCY 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 365
MlsI TGGCCA 1 cut(s) 590
MluCI AATT 1 cut(s) 1009
MluNI TGGCCA 1 cut(s) 590
MlyI GAGTC 1 cut(s) 590
MmeI TCCRAC 1 cut(s) 1102
Mox20I TGGCCA 1 cut(s) 590
MroI TCCGGA 1 cut(s) 632
MscI TGGCCA 1 cut(s) 590
MseI TTAA 3 cut(s) 612, 674, 1008
MslI CAYNNNNRTG 3 cut(s) 228, 1119, 1125
Msp20I TGGCCA 1 cut(s) 590
MspA1I CMGCKG 2 cut(s) 335, 898
MspI CCGG 7 cut(s) 383, 404, 633, 774, 786, 832, 858
MspR9I CCNGG 3 cut(s) 383, 404, 565
MvaI CCWGG 1 cut(s) 565
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 6 cut(s) 77, 332, 341, 525, 644, 908
NciI CCSGG 2 cut(s) 383, 404
NcoI CCATGG 1 cut(s) 585
NdeI CATATG 1 cut(s) 1090
NdeII GATC 7 cut(s) 226, 232, 316, 499, 1117, 1123, 1129
NlaIV GGNNCC 2 cut(s) 569, 894
NmeAIII GCCGAG 1 cut(s) 604
NmuCI GTSAC 3 cut(s) 865, 967, 1145
NspI RCATGY 1 cut(s) 1103
PaeI GCATGC 1 cut(s) 1103
PagI TCATGA 4 cut(s) 223, 229, 1120, 1126
PfeI GAWTC 1 cut(s) 20
PfoI TCCNGGA 1 cut(s) 563
PleI GAGTC 1 cut(s) 589
PpsI GAGTC 1 cut(s) 589
Psp6I CCWGG 1 cut(s) 563
PspGI CCWGG 1 cut(s) 563
PspN4I GGNNCC 2 cut(s) 569, 894
PspPI GGNCC 1 cut(s) 776
PstI CTGCAG 1 cut(s) 663
PstNI CAGNNNCTG 1 cut(s) 350
PsuI RGATCY 1 cut(s) 316
RsaI GTAC 6 cut(s) 44, 276, 448, 479, 488, 956
RsaNI GTAC 6 cut(s) 43, 275, 447, 478, 487, 955
RseI CAYNNNNRTG 3 cut(s) 228, 1119, 1125
SacII CCGCGG 1 cut(s) 336
SaqAI TTAA 3 cut(s) 612, 674, 1008
Sau3AI GATC 7 cut(s) 226, 232, 316, 499, 1117, 1123, 1129
Sau96I GGNCC 1 cut(s) 776
SbfI CCTGCAGG 1 cut(s) 663
SchI GAGTC 1 cut(s) 590
ScrFI CCNGG 3 cut(s) 383, 404, 565
SdaI CCTGCAGG 1 cut(s) 663
SduI GDGCHC 1 cut(s) 365
SfaNI GCATC 1 cut(s) 1031
SfcI CTRYAG 1 cut(s) 659
Sfr303I CCGCGG 1 cut(s) 336
SgrBI CCGCGG 1 cut(s) 336
SinI GGWCC 1 cut(s) 776
SmiMI CAYNNNNRTG 3 cut(s) 228, 1119, 1125
SmlI CTYRAG 1 cut(s) 1133
SmoI CTYRAG 1 cut(s) 1133
SphI GCATGC 1 cut(s) 1103
Sse8387I CCTGCAGG 1 cut(s) 663
Sse9I AATT 1 cut(s) 1009
SsiI CCGC 6 cut(s) 111, 333, 335, 338, 438, 896
SspI AATATT 1 cut(s) 808
StyD4I CCNGG 3 cut(s) 381, 402, 563
StyI CCWWGG 2 cut(s) 327, 585
TaiI ACGT 1 cut(s) 372
TasI AATT 1 cut(s) 1009
TauI GCSGC 4 cut(s) 335, 338, 440, 898
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 3 cut(s) 612, 674, 1008
Tru9I TTAA 3 cut(s) 612, 674, 1008
TscAI CASTG 2 cut(s) 853, 930
TseFI GTSAC 3 cut(s) 865, 967, 1145
TseI GCWGC 6 cut(s) 284, 287, 419, 519, 638, 825
Tsp45I GTSAC 3 cut(s) 865, 967, 1145
TspDTI ATGAA 5 cut(s) 17, 252, 668, 985, 1029
TspGWI ACGGA 1 cut(s) 465
TspRI CASTG 2 cut(s) 853, 930
VpaK11BI GGWCC 1 cut(s) 776
XceI RCATGY 1 cut(s) 1103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.