Rroxscaffold_5G00359900
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000401
Physical Location & Seq
Forward (+)
40206359 .. 40211157
4799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00359900.1

Sequence Viewer

Length: 750 bp
ATGGGGATCCGTCGCAGACGGGCCATCACTCGGAAGGCCAAAATTGGTAGGCACAAGGACTTTGAAGCAGCTCTTCAGCGTCTGAGAGGAAAGCATGCCGACATATCTCAAGAAGCAGCTGAAATCATGGATTATACAGAAATGTTTCAGCACCACTCGGAAAAAGTCCTAGACTTGTTCCAAAAGAGATATGCTTACTCACTCATAGTTGGAGTTGGACTCATGTCACTGCAACAACTTGGGGGTTCCTATGCAATAACATTTTACGCAAGTTCTATATCTGTAGATGCAGGTTTTCCTAGTGACATTGGAACTATATCATCGTCTCTCATTGCGGTACCTTGTGTTGCACTGAGTGTGCTCTTAACAGACAAAGCTGGAAGACGACCACTTCTAATGGTTTCTGCAGGAGGATTGTGCTTGTGTAACTTCCTTGTGGGCTTGGCATTCTGCTTTCAGGACCTCAACTTGTGGAAGGAGGTCACTCCCATTTTGGTGTACATTATCTTGTTGATATACCCCATAAACGTTAAAGGTTCAGCTGGAAGCCTCTCGAGTTGGGTAAAATGGTCTTGTGCTTGGATAGTAACATACACCTTCAATTTCATGATGGACTGGAGCTCGGCAGGAACATTCTTCATCTTCTCAGCCATTTGCCGCATAACACTTCTGTTTGTAGCAAAGCTGGTGCCGGAGACCAAGGGACGAACCCTAGAGGAAATACAAGCATCAATTGCCCATTTCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

249

Amino Acids

27.72

Weight (kDa)

9.15

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 16 - 166 1.1e-20 Sugar (and other) transporter
Sugar_tr PF00083 162 - 243 4.4e-13 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 281
Acc65I GGTACC 1 cut(s) 337
AccB1I GGYRCC 2 cut(s) 337, 688
AciI CCGC 2 cut(s) 335, 658
AclI AACGTT 1 cut(s) 528
AclWI GGATC 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 59
AdeI CACNNNGTG 1 cut(s) 356
AfaI GTAC 2 cut(s) 339, 500
AfiI CCNNNNNNNGG 1 cut(s) 30
AgsI TTSAA 2 cut(s) 65, 601
AluBI AGCT 6 cut(s) 71, 119, 377, 542, 621, 685
AluI AGCT 6 cut(s) 71, 119, 377, 542, 621, 685
Alw21I GWGCWC 2 cut(s) 363, 623
Alw26I GTCTC 2 cut(s) 330, 689
AlwI GGATC 1 cut(s) 14
AlwNI CAGNNNCTG 1 cut(s) 82
Ama87I CYCGRG 1 cut(s) 553
AoxI GGCC 2 cut(s) 21, 36
ApeKI GCWGC 2 cut(s) 68, 116
Asp700I GAANNNNTTC 1 cut(s) 144
Asp718I GGTACC 1 cut(s) 337
AspS9I GGNCC 2 cut(s) 21, 460
AvaI CYCGRG 1 cut(s) 553
AvaII GGWCC 1 cut(s) 460
BamHI GGATCC 1 cut(s) 6
BanI GGYRCC 2 cut(s) 337, 688
BanII GRGCYC 1 cut(s) 623
BbsI GAAGAC 1 cut(s) 388
Bbv12I GWGCWC 2 cut(s) 363, 623
BbvI GCAGC 2 cut(s) 80, 128
BccI CCATC 2 cut(s) 32, 604
BcoDI GTCTC 2 cut(s) 330, 689
BfaI CTAG 3 cut(s) 170, 300, 713
BfmI CTRYAG 2 cut(s) 282, 405
BfuAI ACCTGC 1 cut(s) 281
BisI GCNGC 3 cut(s) 69, 117, 658
BlsI GCNGC 3 cut(s) 70, 118, 659
Bme18I GGWCC 1 cut(s) 460
BmeT110I CYCGRG 1 cut(s) 553
BmgT120I GGNCC 2 cut(s) 21, 460
BmiI GGNNCC 4 cut(s) 8, 247, 339, 690
BmsI GCATC 2 cut(s) 277, 737
BoxI GACNNNNGTC 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 388
BplI GAGNNNNNCTC 2 cut(s) 204, 236
BpmI CTGGAG 1 cut(s) 637
BpuEI CTTGAG 1 cut(s) 93
BsaI GGTCTC 1 cut(s) 689
BsaJI CCNNGG 1 cut(s) 699
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 620
Bse3DI GCAATG 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 699
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 3 cut(s) 74, 344, 660
BseNI ACTGG 1 cut(s) 620
BseXI GCAGC 2 cut(s) 80, 128
BshFI GGCC 2 cut(s) 23, 38
BshNI GGYRCC 2 cut(s) 337, 688
BsiHKAI GWGCWC 2 cut(s) 363, 623
BsiHKCI CYCGRG 1 cut(s) 553
BsiSI CCGG 1 cut(s) 692
BslFI GGGAC 1 cut(s) 717
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 2 cut(s) 330, 689
BsmBI CGTCTC 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 717
BsmI GAATGC 1 cut(s) 446
BsnI GGCC 2 cut(s) 23, 38
Bso31I GGTCTC 1 cut(s) 689
BsoBI CYCGRG 1 cut(s) 553
Bsp1286I GDGCHC 2 cut(s) 363, 623
Bsp1407I TGTACA 1 cut(s) 498
Bsp143I GATC 1 cut(s) 6
BspACI CCGC 2 cut(s) 335, 658
BspANI GGCC 2 cut(s) 23, 38
BspCNI CTCAG 3 cut(s) 75, 345, 659
BspHI TCATGA 1 cut(s) 606
BspLI GGNNCC 4 cut(s) 8, 247, 339, 690
BspMAI CTGCAG 1 cut(s) 409
BspMI ACCTGC 1 cut(s) 281
BspPI GGATC 1 cut(s) 14
BspQI GCTCTTC 1 cut(s) 78
BspT107I GGYRCC 2 cut(s) 337, 688
BspTNI GGTCTC 1 cut(s) 689
BsrDI GCAATG 1 cut(s) 330
BsrGI TGTACA 1 cut(s) 498
BsrI ACTGG 1 cut(s) 620
BssECI CCNNGG 1 cut(s) 699
BssMI GATC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 699
Bst6I CTCTTC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 734
BstAUI TGTACA 1 cut(s) 498
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 3 cut(s) 83, 353, 646
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 2 cut(s) 330, 689
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 1 cut(s) 734
BstNSI RCATGY 1 cut(s) 98
BstPAI GACNNNNGTC 1 cut(s) 223
BstSFI CTRYAG 2 cut(s) 282, 405
BstV1I GCAGC 2 cut(s) 80, 128
BstV2I GAAGAC 1 cut(s) 388
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BsuRI GGCC 2 cut(s) 23, 38
BtsI GCAGTG 1 cut(s) 227
BtsIMutI CAGTG 3 cut(s) 227, 350, 745
BveI ACCTGC 1 cut(s) 281
Cac8I GCNNGC 1 cut(s) 96
CaiI CAGNNNCTG 1 cut(s) 82
CciI TCATGA 1 cut(s) 606
Cfr13I GGNCC 2 cut(s) 21, 460
CseI GACGC 1 cut(s) 68
Csp6I GTAC 2 cut(s) 338, 499
CviAII CATG 4 cut(s) 95, 127, 223, 607
CviQI GTAC 2 cut(s) 338, 499
DdeI CTNAG 3 cut(s) 83, 353, 646
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
DraIII CACNNNGTG 1 cut(s) 356
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Ecl136II GAGCTC 1 cut(s) 621
Eco130I CCWWGG 1 cut(s) 699
Eco24I GRGCYC 1 cut(s) 623
Eco31I GGTCTC 1 cut(s) 689
Eco47I GGWCC 1 cut(s) 460
Eco53kI GAGCTC 1 cut(s) 621
Eco57I CTGAAG 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 553
EcoICRI GAGCTC 1 cut(s) 621
EcoO109I RGGNCCY 1 cut(s) 460
EcoT14I CCWWGG 1 cut(s) 699
EcoT38I GRGCYC 1 cut(s) 623
ErhI CCWWGG 1 cut(s) 699
Esp3I CGTCTC 1 cut(s) 330
FaeI CATG 4 cut(s) 98, 130, 226, 610
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FaqI GGGAC 1 cut(s) 717
FatI CATG 4 cut(s) 94, 126, 222, 606
Fnu4HI GCNGC 3 cut(s) 69, 117, 658
FriOI GRGCYC 1 cut(s) 623
Fsp4HI GCNGC 3 cut(s) 69, 117, 658
FspBI CTAG 3 cut(s) 170, 300, 713
GluI GCNGC 3 cut(s) 69, 117, 658
GsuI CTGGAG 1 cut(s) 637
HaeIII GGCC 2 cut(s) 23, 38
HapII CCGG 1 cut(s) 692
HgaI GACGC 1 cut(s) 68
Hin1II CATG 4 cut(s) 98, 130, 226, 610
HinfI GANTC 1 cut(s) 219
HpaII CCGG 1 cut(s) 692
Hpy166II GTNNAC 1 cut(s) 499
Hpy188I TCNGA 3 cut(s) 33, 84, 160
Hpy188III TCNNGA 4 cut(s) 110, 458, 553, 607
Hpy8I GTNNAC 1 cut(s) 499
Hpy99I CGWCG 1 cut(s) 15
HpyAV CCTTC 3 cut(s) 28, 469, 607
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 5 cut(s) 232, 254, 290, 350, 407
HpyF10VI GCNNNNNNNGC 1 cut(s) 734
HpyF3I CTNAG 3 cut(s) 83, 353, 646
HpySE526I ACGT 1 cut(s) 528
Hsp92II CATG 4 cut(s) 98, 130, 226, 610
KpnI GGTACC 1 cut(s) 341
Kzo9I GATC 1 cut(s) 6
LguI GCTCTTC 1 cut(s) 78
LmnI GCTCC 1 cut(s) 618
LpnPI CCDG 9 cut(s) 276, 363, 393, 443, 528, 601, 612, 671, 705
Lsp1109I GCAGC 2 cut(s) 80, 128
LweI GCATC 2 cut(s) 277, 737
MaeI CTAG 3 cut(s) 170, 300, 713
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 5 cut(s) 225, 302, 425, 481, 586
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 4 cut(s) 65, 393, 628, 634
MfeI CAATTG 1 cut(s) 732
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 2 cut(s) 363, 623
MluCI AATT 3 cut(s) 42, 601, 732
MlyI GAGTC 1 cut(s) 213
MmeI TCCRAC 2 cut(s) 190, 196
MnlI CCTC 6 cut(s) 80, 404, 472, 473, 560, 709
MroXI GAANNNNTTC 1 cut(s) 144
MseI TTAA 2 cut(s) 365, 531
MslI CAYNNNNRTG 1 cut(s) 494
MspA1I CMGCKG 2 cut(s) 119, 542
MspI CCGG 1 cut(s) 692
MunI CAATTG 1 cut(s) 732
Mva1269I GAATGC 1 cut(s) 446
MwoI GCNNNNNNNGC 1 cut(s) 734
NdeII GATC 1 cut(s) 6
NlaIII CATG 4 cut(s) 98, 130, 226, 610
NlaIV GGNNCC 4 cut(s) 8, 247, 339, 690
NmeAIII GCCGAG 1 cut(s) 602
NmuCI GTSAC 3 cut(s) 225, 302, 481
NspI RCATGY 1 cut(s) 98
PaeI GCATGC 1 cut(s) 98
PaeR7I CTCGAG 1 cut(s) 553
PagI TCATGA 1 cut(s) 606
PciSI GCTCTTC 1 cut(s) 78
PctI GAATGC 1 cut(s) 446
PdmI GAANNNNTTC 1 cut(s) 144
PkrI GCNGC 3 cut(s) 70, 118, 659
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PpuMI RGGWCCY 1 cut(s) 460
PshAI GACNNNNGTC 1 cut(s) 223
Psp124BI GAGCTC 1 cut(s) 623
Psp1406I AACGTT 1 cut(s) 528
Psp5II RGGWCCY 1 cut(s) 460
PspN4I GGNNCC 4 cut(s) 8, 247, 339, 690
PspPI GGNCC 2 cut(s) 21, 460
PspPPI RGGWCCY 1 cut(s) 460
PstI CTGCAG 1 cut(s) 409
PstNI CAGNNNCTG 1 cut(s) 82
PsuI RGATCY 1 cut(s) 6
PvuII CAGCTG 2 cut(s) 119, 542
RsaI GTAC 2 cut(s) 339, 500
RsaNI GTAC 2 cut(s) 338, 499
RseI CAYNNNNRTG 1 cut(s) 494
SacI GAGCTC 1 cut(s) 623
SapI GCTCTTC 1 cut(s) 78
SaqAI TTAA 2 cut(s) 365, 531
SatI GCNGC 3 cut(s) 69, 117, 658
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 2 cut(s) 21, 460
SchI GAGTC 1 cut(s) 213
SduI GDGCHC 2 cut(s) 363, 623
SfaNI GCATC 2 cut(s) 277, 737
SfcI CTRYAG 2 cut(s) 282, 405
Sfr274I CTCGAG 1 cut(s) 553
SinI GGWCC 1 cut(s) 460
SlaI CTCGAG 1 cut(s) 553
SmiMI CAYNNNNRTG 1 cut(s) 494
SmlI CTYRAG 2 cut(s) 108, 553
SmoI CTYRAG 2 cut(s) 108, 553
SphI GCATGC 1 cut(s) 98
Sse9I AATT 3 cut(s) 42, 601, 732
SsiI CCGC 2 cut(s) 335, 658
SspMI CTAG 3 cut(s) 170, 300, 713
SstI GAGCTC 1 cut(s) 623
StyI CCWWGG 1 cut(s) 699
TaiI ACGT 1 cut(s) 531
TaqI TCGA 1 cut(s) 554
TasI AATT 3 cut(s) 42, 601, 732
TatI WGTACW 1 cut(s) 498
TauI GCSGC 1 cut(s) 660
Tru1I TTAA 2 cut(s) 365, 531
Tru9I TTAA 2 cut(s) 365, 531
TscAI CASTG 2 cut(s) 234, 357
TseFI GTSAC 3 cut(s) 225, 302, 481
TseI GCWGC 2 cut(s) 68, 116
Tsp45I GTSAC 3 cut(s) 225, 302, 481
TspDTI ATGAA 2 cut(s) 595, 628
TspRI CASTG 2 cut(s) 234, 357
VpaK11BI GGWCC 1 cut(s) 460
XceI RCATGY 1 cut(s) 98
XhoI CTCGAG 1 cut(s) 553
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 3 cut(s) 170, 300, 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.