Rh3BG054500
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000401
Physical Location & Seq
Forward (+)
3719414 .. 3723320
3907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG054500.1

Sequence Viewer

Length: 1101 bp
ATGGAAGAAGGGCTACTAACTCTGTCAGGGTCAATGTCCAATATCAATGGAGCTTCAAGTGATTGCAGTGACGTCATAACTCCAGGAGGGTTCTCCTCCTCGGCCACCCCCGTTGTCGTTCTGAGCGCATTGGTGGCTCTTTGTGGTTCCTTTGGCTATGGCTGTGCTGTAGGATATTCATCCTCTGCTGAATCAGGAATTTTGGAAGACTTGGGCCTTACTATTGCAGCATACTCACTTTTTGGTTCAATTTTGACAATTGGAGGAATAATTGGTGCATTAGTAAATGGGAAGCTAACGGATCTCATTGGTCGTAGAGGTACAATGTGGTTCTCTCAAGTGTTCAGTGCTGCTGGGTGGTTCACCATGGCATTTGCACAGAGTGCTTGGTGGCTGGATATTGGAAGGTTTTCATTGGGAGTTGGCATCGCGATAATTTGCTATGTGGTACCTGTATACATAGCAGAAATAACACCCAAGGATCTGAGAGGAAGGTTTACTTCAGCTCATCAGTTGATGATGAGTTGTGGCGTAGCACTGGCATTTTTCCTTGGAACTGTCATAACCTGGCGAACCTTGGCCGTGATAAGTGCTATTCCATCTCTTGTACACACTATAGGTTTATTTTTCATTCCAGAGTCTCCAAGGTGGCTGGCCAAAATTGGTAGACAAAAAGACTTCGAAGCAGTTCTTCAGCATCTTAGAGGAAAGAATGCCGACATATCTCAAGAAGCAGCTGAAATCATGGATTATACAAAAACCTTTGAGCAGCACTCGGGAAAAGTCATAGACTTGTTCCAGAAGAGATATTCTTACTCACTAATTGTTGGAGTTGGGCTCATGTCCCTGCAACATTTTGGTGGTGCCAATGCAGTATCTGGTTATGCAAGTTCTATATTTGCAGATGCAGGTTTTTCAACGAGCGTTGGGACTATATCAATTGCTCTTATTGGGATTCCTGGTGTTGCCTTGAGTGTGCTCTTAACAGACAAAGTTGGAAGACGACCACTTCTAATGGTTTCGGCTGGTGGATTGTGCTTGAGTTTGTTTCTTGTGGGATTGGCATTCTGCTTTCAGGTTTCACCCCAAACTGTATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

366

Amino Acids

38.63

Weight (kDa)

6.51

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 47 - 355 6.8e-29 Major Facilitator Superfamily
Sugar_tr PF00083 76 - 357 8.5e-59 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08920 AT1G08920 AT1G08920 AT3G05160 AT3G05160 AT3G05160 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT3G05165 AT5G27350 AT5G27360 AT5G27360 AT5G27360 AT5G27360 AT5G27360
fragaria_vesca FvH4_6g05021 FvH4_6g05050 FvH4_6g05051 FvH4_6g05051 FvH4_6g05060 FvH4_6g05061 FvH4_6g05090 FvH4_6g05090 FvH4_6g05090 FvH4_6g05111 FvH4_6g05111 FvH4_6g05120
malus_domestica MD12G1225600.v1.1 MD12G1225900.v1.1 MD12G1226400.v1.1
pyrus_communis pycom12g21050 pycom12g21080
rosa_chinensis RchiOBHm_Chr3g0453541 RchiOBHm_Chr3g0453551 RchiOBHm_Chr3g0453561 RchiOBHm_Chr3g0453571 RchiOBHm_Chr3g0453591 RchiOBHm_Chr3g0453601 RchiOBHm_Chr3g0453621 RchiOBHm_Chr3g0453651
rosa_laevigata RLG00000025501 RLG00000025504 RLG00000025505
rosa_multiflora Rmu_co8451765.1_g000001 Rmu_sc0000510.1_g000021 Rmu_sc0000510.1_g000022 Rmu_sc0000510.1_g000023 Rmu_sc0000510.1_g000027 Rmu_sc0003556.1_g000001 Rmu_sc0003556.1_g000003
rosa_roxburghii Rroxscaffold_5G00359890 Rroxscaffold_5G00359900 Rroxscaffold_6G00430520 Rroxscaffold_6G00430530 Rroxscaffold_6G00430540 Rroxscaffold_6G00430550 Rroxscaffold_6G00430570
rosa_rugosa Rorug02G0649800 Rorug02G0649900 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650000 Rorug02G0650100 Rorug02G0650200 Rorug02G0650300 Rorug02G0650400 Rorug02G0650500 Rorug04G0138300
rosa_samantha Rh3AG052800 Rh3AG052900 Rh3AG053000 Rh3AG053100 Rh3AG053200 Rh3AG053400 Rh3BG054300 Rh3BG054400 Rh3BG054500 Rh3BG054600 Rh3BG054700 Rh3BG054900 Rh3CG053600 Rh3CG053700 Rh3CG053800 Rh3CG053900 Rh3CG054100 Rh3DG054400 Rh3DG054500 Rh3DG054700 Rh3DG054800 Rh3DG055000 Rh3DG055200 Rh4DG197900
rosa_wichuraiana Rw3G004070 Rw3G004080 Rw3G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 75
Acc36I ACCTGC 1 cut(s) 899
Acc65I GGTACC 1 cut(s) 448
AccB1I GGYRCC 2 cut(s) 448, 863
AccI GTMKAC 2 cut(s) 456, 667
AccII CGCG 1 cut(s) 431
AclWI GGATC 2 cut(s) 309, 489
AcoI YGGCCR 3 cut(s) 102, 579, 654
AcsI RAATTY 1 cut(s) 198
AcuI CTGAAG 2 cut(s) 486, 677
AcyI GRCGYC 1 cut(s) 72
AdeI CACNNNGTG 1 cut(s) 383
AfaI GTAC 3 cut(s) 322, 450, 609
AgsI TTSAA 3 cut(s) 57, 249, 918
AjnI CCWGG 3 cut(s) 82, 566, 958
AluBI AGCT 4 cut(s) 53, 295, 506, 737
AluI AGCT 4 cut(s) 53, 295, 506, 737
Alw21I GWGCWC 1 cut(s) 981
Alw26I GTCTC 1 cut(s) 645
AlwI GGATC 2 cut(s) 309, 489
AlwNI CAGNNNCTG 1 cut(s) 878
Ama87I CYCGRG 1 cut(s) 775
AoxI GGCC 4 cut(s) 102, 214, 579, 654
ApeKI GCWGC 4 cut(s) 227, 350, 734, 769
ApoI RAATTY 1 cut(s) 198
Asp700I GAANNNNTTC 2 cut(s) 409, 687
Asp718I GGTACC 1 cut(s) 448
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 2 cut(s) 355, 1074
AsuII TTCGAA 1 cut(s) 681
AvaI CYCGRG 1 cut(s) 775
BalI TGGCCA 1 cut(s) 656
BanI GGYRCC 2 cut(s) 448, 863
BanII GRGCYC 1 cut(s) 840
BarI GAAGNNNNNNTAC 1 cut(s) 29
BbsI GAAGAC 2 cut(s) 213, 1006
Bbv12I GWGCWC 1 cut(s) 981
BbvI GCAGC 4 cut(s) 239, 337, 746, 781
BccI CCATC 1 cut(s) 607
BceAI ACGGC 1 cut(s) 566
BciT130I CCWGG 3 cut(s) 84, 568, 960
BcoDI GTCTC 1 cut(s) 645
BfmI CTRYAG 2 cut(s) 168, 615
BfuAI ACCTGC 1 cut(s) 899
BisI GCNGC 4 cut(s) 228, 351, 735, 770
BlsI GCNGC 4 cut(s) 229, 352, 736, 771
Bme1390I CCNGG 3 cut(s) 84, 568, 960
BmeT110I CYCGRG 1 cut(s) 775
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 3 cut(s) 148, 450, 865
BmrFI CCNGG 3 cut(s) 84, 568, 960
BmsI GCATC 3 cut(s) 435, 706, 895
BpiI GAAGAC 2 cut(s) 213, 1006
BplI GAGNNNNNCTC 4 cut(s) 758, 790, 822, 854
BpmI CTGGAG 1 cut(s) 66
Bpu14I TTCGAA 1 cut(s) 681
BpuEI CTTGAG 4 cut(s) 321, 711, 991, 1060
BsaBI GATNNNNATC 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 6 cut(s) 99, 366, 477, 550, 576, 644
Bse1I ACTGG 1 cut(s) 543
Bse8I GATNNNNATC 1 cut(s) 178
BseBI CCWGG 3 cut(s) 84, 568, 960
BseDI CCNNGG 6 cut(s) 99, 366, 477, 550, 576, 644
BseGI GGATG 1 cut(s) 179
BseJI GATNNNNATC 1 cut(s) 178
BseMII CTCAG 2 cut(s) 113, 476
BseNI ACTGG 1 cut(s) 543
BseRI GAGGAG 2 cut(s) 85, 88
BseXI GCAGC 4 cut(s) 239, 337, 746, 781
BseYI CCCAGC 1 cut(s) 353
Bsh1236I CGCG 1 cut(s) 431
BshFI GGCC 4 cut(s) 104, 216, 581, 656
BshNI GGYRCC 2 cut(s) 448, 863
BsiHKAI GWGCWC 1 cut(s) 981
BsiHKCI CYCGRG 1 cut(s) 775
BslFI GGGAC 2 cut(s) 829, 943
BsmAI GTCTC 1 cut(s) 645
BsmFI GGGAC 2 cut(s) 829, 943
BsmI GAATGC 2 cut(s) 718, 1064
BsnI GGCC 4 cut(s) 104, 216, 581, 656
BsoBI CYCGRG 1 cut(s) 775
Bsp119I TTCGAA 1 cut(s) 681
Bsp1286I GDGCHC 2 cut(s) 840, 981
Bsp1407I TGTACA 1 cut(s) 607
Bsp143I GATC 2 cut(s) 301, 481
Bsp19I CCATGG 1 cut(s) 366
Bsp68I TCGCGA 1 cut(s) 431
BspANI GGCC 4 cut(s) 104, 216, 581, 656
BspCNI CTCAG 2 cut(s) 114, 477
BspFNI CGCG 1 cut(s) 431
BspLI GGNNCC 3 cut(s) 148, 450, 865
BspMI ACCTGC 1 cut(s) 899
BspPI GGATC 2 cut(s) 309, 489
BspT104I TTCGAA 1 cut(s) 681
BspT107I GGYRCC 2 cut(s) 448, 863
BsrGI TGTACA 1 cut(s) 607
BsrI ACTGG 1 cut(s) 543
BssECI CCNNGG 6 cut(s) 99, 366, 477, 550, 576, 644
BssMI GATC 2 cut(s) 301, 481
BssNAI GTATAC 1 cut(s) 457
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 5 cut(s) 366, 477, 550, 576, 644
Bst1107I GTATAC 1 cut(s) 457
Bst2UI CCWGG 3 cut(s) 84, 568, 960
Bst4CI ACNGT 2 cut(s) 559, 1093
Bst6I CTCTTC 1 cut(s) 797
BstACI GRCGYC 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 383
BstAUI TGTACA 1 cut(s) 607
BstBI TTCGAA 1 cut(s) 681
BstC8I GCNNGC 1 cut(s) 654
BstDEI CTNAG 3 cut(s) 122, 485, 701
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 1 cut(s) 179
BstFNI CGCG 1 cut(s) 431
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 2 cut(s) 304, 484
BstMAI GTCTC 1 cut(s) 645
BstMBI GATC 2 cut(s) 301, 481
BstMWI GCNNNNNNNGC 2 cut(s) 134, 383
BstNI CCWGG 3 cut(s) 84, 568, 960
BstSCI CCNGG 3 cut(s) 82, 566, 958
BstSFI CTRYAG 2 cut(s) 168, 615
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 4 cut(s) 239, 337, 746, 781
BstV2I GAAGAC 2 cut(s) 213, 1006
BstX2I RGATCY 2 cut(s) 301, 481
BstYI RGATCY 2 cut(s) 301, 481
BstZ17I GTATAC 1 cut(s) 457
BsuRI GGCC 4 cut(s) 104, 216, 581, 656
BtgI CCRYGG 1 cut(s) 366
BtgZI GCGATG 1 cut(s) 412
BtsCI GGATG 1 cut(s) 179
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 3 cut(s) 73, 352, 536
BtuMI TCGCGA 1 cut(s) 431
BveI ACCTGC 1 cut(s) 899
Cac8I GCNNGC 1 cut(s) 654
CaiI CAGNNNCTG 1 cut(s) 878
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 3 cut(s) 321, 449, 608
CspCI CAANNNNNGTGG 2 cut(s) 94, 129
CviAII CATG 3 cut(s) 367, 745, 841
CviQI GTAC 3 cut(s) 321, 449, 608
DdeI CTNAG 3 cut(s) 122, 485, 701
DpnI GATC 2 cut(s) 303, 483
DpnII GATC 2 cut(s) 301, 481
DraIII CACNNNGTG 1 cut(s) 383
EaeI YGGCCR 3 cut(s) 102, 579, 654
Eam1104I CTCTTC 1 cut(s) 797
EarI CTCTTC 1 cut(s) 797
Eco130I CCWWGG 5 cut(s) 366, 477, 550, 576, 644
Eco24I GRGCYC 1 cut(s) 840
Eco57I CTGAAG 2 cut(s) 486, 677
Eco88I CYCGRG 1 cut(s) 775
EcoRII CCWGG 3 cut(s) 82, 566, 958
EcoT14I CCWWGG 5 cut(s) 366, 477, 550, 576, 644
EcoT38I GRGCYC 1 cut(s) 840
ErhI CCWWGG 5 cut(s) 366, 477, 550, 576, 644
FaeI CATG 3 cut(s) 370, 748, 844
FalI AAGNNNNNCTT 4 cut(s) 484, 516, 675, 707
FaqI GGGAC 2 cut(s) 829, 943
FatI CATG 3 cut(s) 366, 744, 840
FblI GTMKAC 2 cut(s) 456, 667
Fnu4HI GCNGC 4 cut(s) 228, 351, 735, 770
FokI GGATG 1 cut(s) 166
FriOI GRGCYC 1 cut(s) 840
Fsp4HI GCNGC 4 cut(s) 228, 351, 735, 770
GlaI GCGC 1 cut(s) 127
GluI GCNGC 4 cut(s) 228, 351, 735, 770
GsaI CCCAGC 1 cut(s) 357
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 4 cut(s) 104, 216, 581, 656
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 3 cut(s) 370, 748, 844
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HinfI GANTC 3 cut(s) 191, 638, 955
HphI GGTGA 2 cut(s) 355, 1074
Hpy166II GTNNAC 5 cut(s) 363, 457, 498, 610, 668
Hpy188I TCNGA 2 cut(s) 123, 486
Hpy188III TCNNGA 6 cut(s) 195, 430, 635, 728, 777, 799
Hpy8I GTNNAC 5 cut(s) 363, 457, 498, 610, 668
HpyAV CCTTC 2 cut(s) 399, 486
HpyCH4III ACNGT 2 cut(s) 559, 1093
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 9 cut(s) 66, 227, 278, 377, 850, 872, 887, 902, 908
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 383
HpyF3I CTNAG 3 cut(s) 122, 485, 701
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 3 cut(s) 370, 748, 844
HspAI GCGC 1 cut(s) 126
KpnI GGTACC 1 cut(s) 452
Kzo9I GATC 2 cut(s) 301, 481
LmnI GCTCC 1 cut(s) 50
Lsp1109I GCAGC 4 cut(s) 239, 337, 746, 781
LweI GCATC 3 cut(s) 435, 706, 895
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 68
MalI GATC 2 cut(s) 303, 483
MboI GATC 2 cut(s) 301, 481
MboII GAAGA 5 cut(s) 17, 218, 683, 814, 1011
MfeI CAATTG 2 cut(s) 258, 939
MflI RGATCY 2 cut(s) 301, 481
MhlI GDGCHC 2 cut(s) 840, 981
MlsI TGGCCA 1 cut(s) 656
MluCI AATT 8 cut(s) 198, 249, 258, 270, 435, 660, 822, 939
MluNI TGGCCA 1 cut(s) 656
MlyI GAGTC 1 cut(s) 647
MmeI TCCRAC 2 cut(s) 808, 976
MnlI CCTC 8 cut(s) 80, 106, 109, 193, 257, 311, 482, 698
Mox20I TGGCCA 1 cut(s) 656
MroXI GAANNNNTTC 2 cut(s) 409, 687
MscI TGGCCA 1 cut(s) 656
MseI TTAA 1 cut(s) 983
MslI CAYNNNNRTG 1 cut(s) 858
Msp20I TGGCCA 1 cut(s) 656
MspA1I CMGCKG 1 cut(s) 737
MspR9I CCNGG 3 cut(s) 84, 568, 960
MunI CAATTG 2 cut(s) 258, 939
Mva1269I GAATGC 2 cut(s) 718, 1064
MvaI CCWGG 3 cut(s) 84, 568, 960
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 2 cut(s) 134, 383
NcoI CCATGG 1 cut(s) 366
NdeII GATC 2 cut(s) 301, 481
NlaIII CATG 3 cut(s) 370, 748, 844
NlaIV GGNNCC 3 cut(s) 148, 450, 865
NmeAIII GCCGAG 1 cut(s) 80
NmuCI GTSAC 1 cut(s) 68
NruI TCGCGA 1 cut(s) 431
NspV TTCGAA 1 cut(s) 681
PctI GAATGC 2 cut(s) 718, 1064
PdmI GAANNNNTTC 2 cut(s) 409, 687
PfeI GAWTC 2 cut(s) 191, 955
PfoI TCCNGGA 1 cut(s) 82
PkrI GCNGC 4 cut(s) 229, 352, 736, 771
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
Psp6I CCWGG 3 cut(s) 82, 566, 958
PspFI CCCAGC 1 cut(s) 353
PspGI CCWGG 3 cut(s) 82, 566, 958
PspN4I GGNNCC 3 cut(s) 148, 450, 865
PspPI GGNCC 1 cut(s) 214
PstNI CAGNNNCTG 1 cut(s) 878
PsuI RGATCY 2 cut(s) 301, 481
PvuII CAGCTG 1 cut(s) 737
RruI TCGCGA 1 cut(s) 431
RsaI GTAC 3 cut(s) 322, 450, 609
RsaNI GTAC 3 cut(s) 321, 449, 608
RseI CAYNNNNRTG 1 cut(s) 858
SaqAI TTAA 1 cut(s) 983
SatI GCNGC 4 cut(s) 228, 351, 735, 770
Sau3AI GATC 2 cut(s) 301, 481
Sau96I GGNCC 1 cut(s) 214
SchI GAGTC 1 cut(s) 647
ScrFI CCNGG 3 cut(s) 84, 568, 960
SduI GDGCHC 2 cut(s) 840, 981
SfaNI GCATC 3 cut(s) 435, 706, 895
SfcI CTRYAG 2 cut(s) 168, 615
SfuI TTCGAA 1 cut(s) 681
SmiMI CAYNNNNRTG 1 cut(s) 858
SmlI CTYRAG 4 cut(s) 336, 726, 970, 1039
SmoI CTYRAG 4 cut(s) 336, 726, 970, 1039
Sse9I AATT 8 cut(s) 198, 249, 258, 270, 435, 660, 822, 939
StyD4I CCNGG 3 cut(s) 82, 566, 958
StyI CCWWGG 5 cut(s) 366, 477, 550, 576, 644
TaaI ACNGT 2 cut(s) 559, 1093
TaiI ACGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 681
TasI AATT 8 cut(s) 198, 249, 258, 270, 435, 660, 822, 939
TatI WGTACW 1 cut(s) 607
TfiI GAWTC 2 cut(s) 191, 955
Tru1I TTAA 1 cut(s) 983
Tru9I TTAA 1 cut(s) 983
TscAI CASTG 3 cut(s) 73, 352, 543
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 4 cut(s) 227, 350, 734, 769
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 3 cut(s) 168, 402, 619
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 3 cut(s) 73, 352, 543
XapI RAATTY 1 cut(s) 198
XmiI GTMKAC 2 cut(s) 456, 667
XmnI GAANNNNTTC 2 cut(s) 409, 687
ZraI GACGTC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.