Rh4BG197700

ATP hydrolysis coupled proton transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0010725
Physical Location & Seq
Reverse (-)
34129292 .. 34133190
3899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG197700.1

Sequence Viewer

Length: 207 bp
ATGTCGCGTTACAAAGGACCTTGTTTCAAAAAAAATCCGTCGTCTGGGGGCTTTACCAGGGCTGGATTGGCCATTGGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACCGCTGTGGGACAGGCTGTAGAAGGGATCGTGAGACAACCAGACGCAGAAGGAAAAATACGAGATTGCAATCAATGCACACATTCAAAATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031976 GO:0031984 GO:0032991 GO:0033177 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042623 GO:0042625 GO:0042626 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045259 GO:0045263 GO:0046034 GO:0046390 GO:0046483 GO:0046933 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0099131 GO:0099132 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 ko03010 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map00195 map01100 map03010 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323
Pfam Domains
Protein Families
ATP-synt_C ATP-synt_ab ATP-synt_ab_C ATP-synt_ab_N

Protein Analysis

68

Amino Acids

6.95

Weight (kDa)

9.57

Isoelectric Point (pI)

18.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_C PF00137 21 - 55 2.6e-09 ATP synthase subunit C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 110
AccII CGCG 1 cut(s) 7
AciI CCGC 1 cut(s) 114
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 1 cut(s) 69
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 2 cut(s) 44, 101
AgsI TTSAA 2 cut(s) 28, 198
AjnI CCWGG 2 cut(s) 56, 94
Alw26I GTCTC 1 cut(s) 139
AlwI GGATC 1 cut(s) 146
AoxI GGCC 1 cut(s) 69
Asp718I GGTACC 1 cut(s) 110
AspS9I GGNCC 2 cut(s) 17, 92
AvaII GGWCC 2 cut(s) 17, 92
BaeI ACNNNNGTAYC 2 cut(s) 102, 135
BalI TGGCCA 1 cut(s) 71
BanI GGYRCC 1 cut(s) 110
BarI GAAGNNNNNNTAC 2 cut(s) 153, 185
BciT130I CCWGG 2 cut(s) 58, 96
BcoDI GTCTC 1 cut(s) 139
BfmI CTRYAG 1 cut(s) 129
Bme1390I CCNGG 2 cut(s) 58, 96
Bme18I GGWCC 2 cut(s) 17, 92
BmgT120I GGNCC 2 cut(s) 17, 92
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 2 cut(s) 58, 96
BsaBI GATNNNNATC 1 cut(s) 180
BsaJI CCNNGG 2 cut(s) 57, 95
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 101
Bse8I GATNNNNATC 1 cut(s) 180
BseBI CCWGG 2 cut(s) 58, 96
BseDI CCNNGG 2 cut(s) 57, 95
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 44, 101
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 110
BslFI GGGAC 1 cut(s) 135
BslI CCNNNNNNNGG 2 cut(s) 44, 101
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 135
BsnI GGCC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 138
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 71
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 112
BspPI GGATC 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 110
BssECI CCNNGG 2 cut(s) 57, 95
BssMI GATC 1 cut(s) 138
Bst2UI CCWGG 2 cut(s) 58, 96
BstAPI GCANNNNNTGC 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 81
BstFNI CGCG 1 cut(s) 7
BstKTI GATC 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 2 cut(s) 68, 186
BstNI CCWGG 2 cut(s) 58, 96
BstSCI CCNGG 2 cut(s) 56, 94
BstSFI CTRYAG 1 cut(s) 129
BstUI CGCG 1 cut(s) 7
BsuRI GGCC 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 81
Cfr13I GGNCC 2 cut(s) 17, 92
CseI GACGC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 111
CviJI RGCY 5 cut(s) 51, 62, 71, 79, 128
CviKI_1 RGCY 5 cut(s) 51, 62, 71, 79, 128
CviQI GTAC 1 cut(s) 111
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
EaeI YGGCCR 1 cut(s) 69
Eco47I GGWCC 2 cut(s) 17, 92
EcoO109I RGGNCCY 1 cut(s) 17
EcoRII CCWGG 2 cut(s) 56, 94
FaqI GGGAC 1 cut(s) 135
HaeIII GGCC 1 cut(s) 71
HgaI GACGC 1 cut(s) 164
Hpy188III TCNNGA 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 2 cut(s) 128, 155
HpyCH4V TGCA 2 cut(s) 180, 189
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 186
KpnI GGTACC 1 cut(s) 114
Kzo9I GATC 1 cut(s) 138
LpnPI CCDG 8 cut(s) 30, 43, 48, 70, 81, 108, 110, 165
MaeIII GTNAC 1 cut(s) 8
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MlsI TGGCCA 1 cut(s) 71
MluNI TGGCCA 1 cut(s) 71
Mox20I TGGCCA 1 cut(s) 71
MscI TGGCCA 1 cut(s) 71
Msp20I TGGCCA 1 cut(s) 71
MspA1I CMGCKG 1 cut(s) 116
MspR9I CCNGG 2 cut(s) 58, 96
MvaI CCWGG 2 cut(s) 58, 96
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 68, 186
NdeII GATC 1 cut(s) 138
NlaIV GGNNCC 1 cut(s) 112
PpuMI RGGWCCY 1 cut(s) 17
Psp5II RGGWCCY 1 cut(s) 17
Psp6I CCWGG 2 cut(s) 56, 94
PspGI CCWGG 2 cut(s) 56, 94
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 2 cut(s) 17, 92
PspPPI RGGWCCY 1 cut(s) 17
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 2 cut(s) 17, 92
ScrFI CCNGG 2 cut(s) 58, 96
SetI ASST 3 cut(s) 22, 97, 112
SfcI CTRYAG 1 cut(s) 129
SinI GGWCC 2 cut(s) 17, 92
SsiI CCGC 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 56, 94
TspGWI ACGGA 1 cut(s) 27
VpaK11BI GGWCC 2 cut(s) 17, 92
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.