Rorug02G0491000

F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010725
Physical Location & Seq
Reverse (-)
62004051 .. 62005588
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0491000.1

Sequence Viewer

Length: 894 bp
ATGCCACGTGACCAAGAAAGTCTGACTTTTGACCAGCCTCCCAGAGCCACCATATATACCTCAATCCTACGCTCTCATATTCCTTCCCCCAAACCAGAGAAAGAAAAACCACTCCCTTTTCTCCGTTCACATTTCTTTCTTTGCTTTATGGCCCTGAGTGGAACCATGTCCAACCCCAGCGACTGGCTCCAATACTACAACGTCCAGAACAACACCCTCTCCGGCCAAGCCCTCCCTTTGTCGTCCCACGGCGGCCACTTGTCCTCCGGTGCCGGCTTGTTCGGTCAAGACCAAGCTGTCTCTCATCACGAAGCCACTGTCATCACCACCACCACCACCACCGCTACAGCTTCTGCTGCGGCACCAAATCCCAGCTCCAGTAACAACACCAACAGCTTGAGCCCGGAAGGCCGGGTTTCCAAGCCGGTCCGAAAACGGTCCAGGGCTTCCAGAAGAACCCCCACCACGCTGCTCAACACCGACACTGCGAACTTTCGCGCTATGGTGCAGCAGTTCACTGGCGGCCCAAGTACGGCGTCATTTACCACCCAGCCTGGTGCAACCAATTTCAGTTTCGGACTTGGGGCCAGACAAGGGTTTGTGAACCCTAATGCTTCAGTGATGGTGCCACCTGGGTACAACCATCTACAGCTTCAGCAGCAACAGCAAAACCCGTATCTGCTTTCACTGAACAACAATAATACCGGTGATAATCATGGGTTTGTTCAGAGATTAATGAGCTCGTCATCATCGGCAAGACCCACAAACATGGGGGTTTCATTTTCTTCTGATGAGTTTTCGTCCCAAGTGCAAGGGCAGCCTAGTCTGGTTGGAAGTGGTAGGCCTAATTCGAATTCCTCCAATGAGAACAGGAGCAACAGTTTCTTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031976 GO:0031984 GO:0032991 GO:0033177 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042623 GO:0042625 GO:0042626 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045259 GO:0045263 GO:0046034 GO:0046390 GO:0046483 GO:0046933 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0099131 GO:0099132 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 map00190 map00195 map01100
Pfam Domains
Protein Families
ATP-synt_C

Protein Analysis

297

Amino Acids

32.05

Weight (kDa)

9.92

Isoelectric Point (pI)

53.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 153 - 178 7.2e-10 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 296
AccB1I GGYRCC 3 cut(s) 269, 361, 625
AccB7I CCANNNNNTGG 1 cut(s) 183
AccII CGCG 1 cut(s) 498
AciI CCGC 4 cut(s) 252, 342, 359, 522
AcoI YGGCCR 2 cut(s) 223, 253
AcsI RAATTY 1 cut(s) 853
AcuI CTGAAG 2 cut(s) 600, 638
AcvI CACGTG 1 cut(s) 8
AcyI GRCGYC 1 cut(s) 536
AfaI GTAC 2 cut(s) 532, 638
AfiI CCNNNNNNNGG 3 cut(s) 183, 532, 594
AgeI ACCGGT 1 cut(s) 704
AjnI CCWGG 3 cut(s) 440, 553, 631
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
AluBI AGCT 6 cut(s) 296, 350, 375, 396, 652, 741
AluI AGCT 6 cut(s) 296, 350, 375, 396, 652, 741
Alw21I GWGCWC 1 cut(s) 743
Alw26I GTCTC 1 cut(s) 304
AlwNI CAGNNNCTG 2 cut(s) 183, 353
AoxI GGCC 7 cut(s) 150, 223, 253, 409, 523, 585, 842
ApeKI GCWGC 5 cut(s) 356, 469, 508, 658, 817
ApoI RAATTY 1 cut(s) 853
ArsI GACNNNNNNTTYG 2 cut(s) 303, 335
AseI ATTAAT 1 cut(s) 734
AsiGI ACCGGT 1 cut(s) 704
AspLEI GCGC 1 cut(s) 500
AspS9I GGNCC 5 cut(s) 151, 427, 438, 524, 585
AsuC2I CCSGG 2 cut(s) 404, 413
AsuHPI GGTGA 2 cut(s) 316, 719
AsuII TTCGAA 1 cut(s) 851
AvaII GGWCC 2 cut(s) 427, 438
BanI GGYRCC 3 cut(s) 269, 361, 625
BanII GRGCYC 2 cut(s) 404, 743
BbrPI CACGTG 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 743
BbvI GCAGC 5 cut(s) 343, 456, 520, 670, 829
BccI CCATC 2 cut(s) 616, 651
BceAI ACGGC 2 cut(s) 265, 549
BciT130I CCWGG 3 cut(s) 442, 555, 633
BcnI CCSGG 2 cut(s) 404, 413
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 1 cut(s) 822
BfmI CTRYAG 2 cut(s) 345, 647
BglI GCCNNNNNGGC 1 cut(s) 408
BisI GCNGC 8 cut(s) 253, 357, 360, 470, 509, 523, 659, 818
BlsI GCNGC 8 cut(s) 254, 358, 361, 471, 510, 524, 660, 819
Bme1390I CCNGG 5 cut(s) 404, 413, 442, 555, 633
Bme18I GGWCC 2 cut(s) 427, 438
BmgT120I GGNCC 5 cut(s) 151, 427, 438, 524, 585
BmiI GGNNCC 6 cut(s) 163, 188, 271, 363, 586, 627
BmrFI CCNGG 5 cut(s) 404, 413, 442, 555, 633
BpmI CTGGAG 1 cut(s) 361
Bpu14I TTCGAA 1 cut(s) 851
BpuEI CTTGAG 1 cut(s) 418
BpuMI CCSGG 2 cut(s) 404, 413
BsaAI YACGTR 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 536
BsaJI CCNNGG 3 cut(s) 247, 441, 632
BsaWI WCCGGW 2 cut(s) 266, 704
BsaXI ACNNNNNCTCC 5 cut(s) 203, 233, 248, 278, 865
Bsc4I CCNNNNNNNGG 3 cut(s) 183, 532, 594
Bse118I RCCGGY 3 cut(s) 272, 424, 704
Bse1I ACTGG 3 cut(s) 188, 378, 523
BseBI CCWGG 3 cut(s) 442, 555, 633
BseDI CCNNGG 3 cut(s) 247, 441, 632
BseLI CCNNNNNNNGG 3 cut(s) 183, 532, 594
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 3 cut(s) 188, 378, 523
BseXI GCAGC 5 cut(s) 343, 456, 520, 670, 829
BseYI CCCAGC 3 cut(s) 176, 371, 549
BsgI GTGCAG 1 cut(s) 527
Bsh1236I CGCG 1 cut(s) 498
BshFI GGCC 7 cut(s) 152, 225, 255, 411, 525, 587, 844
BshNI GGYRCC 3 cut(s) 269, 361, 625
BshTI ACCGGT 1 cut(s) 704
BsiHKAI GWGCWC 1 cut(s) 743
BsiSI CCGG 7 cut(s) 222, 267, 273, 404, 412, 425, 705
BslFI GGGAC 2 cut(s) 229, 787
BslI CCNNNNNNNGG 3 cut(s) 183, 532, 594
BsmAI GTCTC 1 cut(s) 304
BsmFI GGGAC 2 cut(s) 229, 787
BsnI GGCC 7 cut(s) 152, 225, 255, 411, 525, 587, 844
Bsp119I TTCGAA 1 cut(s) 851
Bsp1286I GDGCHC 2 cut(s) 404, 743
BspACI CCGC 4 cut(s) 252, 342, 359, 522
BspANI GGCC 7 cut(s) 152, 225, 255, 411, 525, 587, 844
BspCNI CTCAG 1 cut(s) 147
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 6 cut(s) 163, 188, 271, 363, 586, 627
BspT104I TTCGAA 1 cut(s) 851
BspT107I GGYRCC 3 cut(s) 269, 361, 625
BsrFI RCCGGY 3 cut(s) 272, 424, 704
BsrI ACTGG 3 cut(s) 188, 378, 523
BssAI RCCGGY 3 cut(s) 272, 424, 704
BssECI CCNNGG 3 cut(s) 247, 441, 632
BssNI GRCGYC 1 cut(s) 536
Bst2UI CCWGG 3 cut(s) 442, 555, 633
Bst4CI ACNGT 3 cut(s) 319, 438, 881
BstACI GRCGYC 1 cut(s) 536
BstBAI YACGTR 1 cut(s) 8
BstBI TTCGAA 1 cut(s) 851
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 1 cut(s) 155
BstDSI CCRYGG 1 cut(s) 247
BstFNI CGCG 1 cut(s) 498
BstHHI GCGC 1 cut(s) 500
BstMAI GTCTC 1 cut(s) 304
BstMWI GCNNNNNNNGC 5 cut(s) 356, 408, 658, 664, 817
BstNI CCWGG 3 cut(s) 442, 555, 633
BstSCI CCNGG 5 cut(s) 402, 411, 440, 553, 631
BstSFI CTRYAG 2 cut(s) 345, 647
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 5 cut(s) 343, 456, 520, 670, 829
BstXI CCANNNNNNTGG 1 cut(s) 769
BsuRI GGCC 7 cut(s) 152, 225, 255, 411, 525, 587, 844
BtgI CCRYGG 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 5 cut(s) 315, 483, 516, 624, 686
Cac8I GCNNGC 1 cut(s) 274
CaiI CAGNNNCTG 2 cut(s) 183, 353
CfoI GCGC 1 cut(s) 500
Cfr10I RCCGGY 3 cut(s) 272, 424, 704
Cfr13I GGNCC 5 cut(s) 151, 427, 438, 524, 585
CpoI CGGWCCG 1 cut(s) 427
CseI GACGC 1 cut(s) 525
Csp6I GTAC 2 cut(s) 531, 637
CspAI ACCGGT 1 cut(s) 704
CspI CGGWCCG 1 cut(s) 427
CviAII CATG 3 cut(s) 166, 716, 769
CviQI GTAC 2 cut(s) 531, 637
DdeI CTNAG 1 cut(s) 155
DrdI GACNNNNNNGTC 1 cut(s) 296
DseDI GACNNNNNNGTC 1 cut(s) 296
EaeI YGGCCR 2 cut(s) 223, 253
Ecl136II GAGCTC 1 cut(s) 741
Eco147I AGGCCT 1 cut(s) 844
Eco24I GRGCYC 2 cut(s) 404, 743
Eco47I GGWCC 2 cut(s) 427, 438
Eco53kI GAGCTC 1 cut(s) 741
Eco57I CTGAAG 2 cut(s) 600, 638
Eco72I CACGTG 1 cut(s) 8
EcoICRI GAGCTC 1 cut(s) 741
EcoRI GAATTC 1 cut(s) 853
EcoRII CCWGG 3 cut(s) 440, 553, 631
EcoT38I GRGCYC 2 cut(s) 404, 743
FaeI CATG 3 cut(s) 169, 719, 772
FaiI YATR 9 cut(s) 53, 55, 57, 78, 149, 167, 503, 717, 770
FalI AAGNNNNNCTT 2 cut(s) 10, 42
FaqI GGGAC 2 cut(s) 229, 787
FatI CATG 3 cut(s) 165, 715, 768
Fnu4HI GCNGC 8 cut(s) 253, 357, 360, 470, 509, 523, 659, 818
FriOI GRGCYC 2 cut(s) 404, 743
Fsp4HI GCNGC 8 cut(s) 253, 357, 360, 470, 509, 523, 659, 818
FspBI CTAG 1 cut(s) 822
GlaI GCGC 1 cut(s) 499
GluI GCNGC 8 cut(s) 253, 357, 360, 470, 509, 523, 659, 818
GsaI CCCAGC 3 cut(s) 180, 375, 553
GsuI CTGGAG 1 cut(s) 361
HaeIII GGCC 7 cut(s) 152, 225, 255, 411, 525, 587, 844
HapII CCGG 7 cut(s) 222, 267, 273, 404, 412, 425, 705
HgaI GACGC 1 cut(s) 525
HhaI GCGC 1 cut(s) 500
Hin1I GRCGYC 1 cut(s) 536
Hin1II CATG 3 cut(s) 169, 719, 772
Hin6I GCGC 1 cut(s) 498
HinP1I GCGC 1 cut(s) 498
HpaII CCGG 7 cut(s) 222, 267, 273, 404, 412, 425, 705
HphI GGTGA 2 cut(s) 316, 719
Hpy166II GTNNAC 3 cut(s) 128, 516, 604
Hpy188I TCNGA 5 cut(s) 24, 431, 578, 729, 790
Hpy188III TCNNGA 4 cut(s) 205, 287, 308, 450
Hpy8I GTNNAC 3 cut(s) 128, 516, 604
HpyAV CCTTC 2 cut(s) 93, 401
HpyCH4III ACNGT 3 cut(s) 319, 438, 881
HpyCH4IV ACGT 2 cut(s) 7, 201
HpyCH4V TGCA 3 cut(s) 508, 560, 811
HpyF10VI GCNNNNNNNGC 5 cut(s) 356, 408, 658, 664, 817
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 2 cut(s) 7, 201
Hsp92I GRCGYC 1 cut(s) 536
Hsp92II CATG 3 cut(s) 169, 719, 772
HspAI GCGC 1 cut(s) 498
KroI GCCGGC 1 cut(s) 272
KroNI GCCGGC 1 cut(s) 274
LmnI GCTCC 3 cut(s) 192, 380, 873
Lsp1109I GCAGC 5 cut(s) 343, 456, 520, 670, 829
MaeI CTAG 1 cut(s) 822
MaeII ACGT 2 cut(s) 7, 201
MaeIII GTNAC 2 cut(s) 8, 380
MboII GAAGA 2 cut(s) 465, 777
MhlI GDGCHC 2 cut(s) 404, 743
MluCI AATT 3 cut(s) 565, 847, 853
MmeI TCCRAC 2 cut(s) 195, 811
MnlI CCTC 6 cut(s) 48, 70, 227, 242, 274, 868
MroNI GCCGGC 1 cut(s) 272
MseI TTAA 1 cut(s) 734
MslI CAYNNNNRTG 1 cut(s) 767
MspI CCGG 7 cut(s) 222, 267, 273, 404, 412, 425, 705
MspR9I CCNGG 5 cut(s) 404, 413, 442, 555, 633
MvaI CCWGG 3 cut(s) 442, 555, 633
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 5 cut(s) 356, 408, 658, 664, 817
NaeI GCCGGC 1 cut(s) 274
NciI CCSGG 2 cut(s) 404, 413
NgoMIV GCCGGC 1 cut(s) 272
NlaIII CATG 3 cut(s) 169, 719, 772
NlaIV GGNNCC 6 cut(s) 163, 188, 271, 363, 586, 627
NmuCI GTSAC 1 cut(s) 8
NspV TTCGAA 1 cut(s) 851
PceI AGGCCT 1 cut(s) 844
PdiI GCCGGC 1 cut(s) 274
PflMI CCANNNNNTGG 1 cut(s) 183
PinAI ACCGGT 1 cut(s) 704
PkrI GCNGC 8 cut(s) 254, 358, 361, 471, 510, 524, 660, 819
PmaCI CACGTG 1 cut(s) 8
PmlI CACGTG 1 cut(s) 8
Ppu21I YACGTR 1 cut(s) 8
PshBI ATTAAT 1 cut(s) 734
Psp124BI GAGCTC 1 cut(s) 743
Psp6I CCWGG 3 cut(s) 440, 553, 631
PspCI CACGTG 1 cut(s) 8
PspFI CCCAGC 3 cut(s) 176, 371, 549
PspGI CCWGG 3 cut(s) 440, 553, 631
PspN4I GGNNCC 6 cut(s) 163, 188, 271, 363, 586, 627
PspPI GGNCC 5 cut(s) 151, 427, 438, 524, 585
PstNI CAGNNNCTG 2 cut(s) 183, 353
RsaI GTAC 2 cut(s) 532, 638
RsaNI GTAC 2 cut(s) 531, 637
RseI CAYNNNNRTG 1 cut(s) 767
Rsr2I CGGWCCG 1 cut(s) 427
RsrII CGGWCCG 1 cut(s) 427
SacI GAGCTC 1 cut(s) 743
SaqAI TTAA 1 cut(s) 734
SatI GCNGC 8 cut(s) 253, 357, 360, 470, 509, 523, 659, 818
Sau96I GGNCC 5 cut(s) 151, 427, 438, 524, 585
ScrFI CCNGG 5 cut(s) 404, 413, 442, 555, 633
SduI GDGCHC 2 cut(s) 404, 743
SfcI CTRYAG 2 cut(s) 345, 647
SfuI TTCGAA 1 cut(s) 851
SinI GGWCC 2 cut(s) 427, 438
SmiMI CAYNNNNRTG 1 cut(s) 767
SmlI CTYRAG 1 cut(s) 397
SmoI CTYRAG 1 cut(s) 397
Sse9I AATT 3 cut(s) 565, 847, 853
SseBI AGGCCT 1 cut(s) 844
SsiI CCGC 4 cut(s) 252, 342, 359, 522
SspMI CTAG 1 cut(s) 822
SstI GAGCTC 1 cut(s) 743
StuI AGGCCT 1 cut(s) 844
StyD4I CCNGG 5 cut(s) 402, 411, 440, 553, 631
TaaI ACNGT 3 cut(s) 319, 438, 881
TaiI ACGT 2 cut(s) 10, 204
TaqI TCGA 1 cut(s) 851
TaqII GACCGA 1 cut(s) 272
TasI AATT 3 cut(s) 565, 847, 853
TauI GCSGC 3 cut(s) 255, 362, 525
Tru1I TTAA 1 cut(s) 734
Tru9I TTAA 1 cut(s) 734
TscAI CASTG 5 cut(s) 322, 490, 523, 624, 693
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 5 cut(s) 356, 469, 508, 658, 817
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 768
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 5 cut(s) 322, 490, 523, 624, 693
Van91I CCANNNNNTGG 1 cut(s) 183
VpaK11BI GGWCC 2 cut(s) 427, 438
VspI ATTAAT 1 cut(s) 734
XapI RAATTY 1 cut(s) 853
XspI CTAG 1 cut(s) 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.