RLG00000000280

ATP hydrolysis coupled proton transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0010725
Physical Location & Seq
Reverse (-)
347651 .. 348933
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000280

Sequence Viewer

Length: 687 bp
ATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGATTGGCCGTCGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACTGCTGCGGGACAGGCTGTAGAAGGGATCGCGAGACAACCAGAGGCGGAAGGAAAAATACGGGGAACAACAACCCGCGGAAATCGCTGGTTTGAGGATGAGGATCCAACTCACTTTTTCCTTTACCTTCTTAGTCCAATCGACGAACTTTTTTTAGGAAGTATTGCAATTGTAACAAACGAGGGAGTGTTAAGTGATTTATTAGATAATCGAAAACAGAGGATCTTGAAGACTATTCAAAATTCAGAAGAATTACGCGAGGCGGCCCTAGACCAGTTGGAGAAAGCCCGGGCCCGCTTACGGAAAGTAGAAATAGAAGCGGATCAGTTTCGAATGACTGGATACTCTGAAATAGAACGAGAAAAATTGAATTTGATTAATGCAACTTCTAAGACTTTGGAACAGTTAGAAAATTACAAAAATGAAACCATTCATTTTGAACAACAAAGAGCAATTAATCAAGTTCGACAACGGGTTTTTCAACAAGCCTTACAGGGGGCTCTAGGAACTCTGAATAGTTGTTTGAACAACGAATTACATTTACGTACCATCAGTACTAATATTGGCATGTTTGGGACGGTGAAAGAAATAACGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031976 GO:0031984 GO:0032991 GO:0033177 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042623 GO:0042625 GO:0042626 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045259 GO:0045263 GO:0046034 GO:0046390 GO:0046483 GO:0046933 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0099131 GO:0099132 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 ko03010 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map00195 map01100 map03010 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323
Pfam Domains
Protein Families
ATP-synt_C ATP-synt_ab ATP-synt_ab_C ATP-synt_ab_N

Protein Analysis

229

Amino Acids

25.26

Weight (kDa)

5.41

Isoelectric Point (pI)

31.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_C PF00137 11 - 49 1.2e-09 ATP synthase subunit C
ATP-synt_B PF00430 85 - 200 3.8e-24 ATP synthase B/B' CF(0)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 119, 165, 345
AciI CCGC 8 cut(s) 21, 95, 134, 163, 165, 350, 382, 407
AclWI GGATC 5 cut(s) 122, 185, 198, 317, 417
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 2 cut(s) 328, 457
AfaI GTAC 3 cut(s) 88, 634, 643
AfiI CCNNNNNNNGG 3 cut(s) 77, 387, 582
AgsI TTSAA 6 cut(s) 316, 326, 457, 527, 569, 613
AjnI CCWGG 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 5 cut(s) 122, 185, 198, 317, 417
Ama87I CYCGRG 1 cut(s) 375
AoxI GGCC 3 cut(s) 45, 351, 378
ApaI GGGCCC 1 cut(s) 382
ApeKI GCWGC 2 cut(s) 35, 92
ApoI RAATTY 2 cut(s) 328, 457
AseI ATTAAT 2 cut(s) 465, 543
Asp700I GAANNNNTTC 1 cut(s) 516
AspS9I GGNCC 4 cut(s) 68, 352, 378, 379
AsuC2I CCSGG 2 cut(s) 376, 377
AsuHPI GGTGA 1 cut(s) 679
AsuII TTCGAA 1 cut(s) 418
AvaI CYCGRG 1 cut(s) 375
AvaII GGWCC 1 cut(s) 68
BaeGI GKGCMC 1 cut(s) 382
BamHI GGATCC 1 cut(s) 190
BanII GRGCYC 2 cut(s) 382, 589
BarI GAAGNNNNNNTAC 2 cut(s) 129, 161
BbsI GAAGAC 1 cut(s) 323
BbvI GCAGC 2 cut(s) 22, 79
BccI CCATC 1 cut(s) 644
BceAI ACGGC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 72
BciVI GTATCC 1 cut(s) 422
BcnI CCSGG 2 cut(s) 376, 377
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 2 cut(s) 356, 590
BfmI CTRYAG 1 cut(s) 105
BfuI GTATCC 1 cut(s) 422
BisI GCNGC 4 cut(s) 21, 36, 93, 351
BlsI GCNGC 4 cut(s) 22, 37, 94, 352
BmcAI AGTACT 1 cut(s) 643
Bme1390I CCNGG 3 cut(s) 72, 376, 377
Bme18I GGWCC 1 cut(s) 68
BmeT110I CYCGRG 1 cut(s) 375
BmgT120I GGNCC 4 cut(s) 68, 352, 378, 379
BmiI GGNNCC 2 cut(s) 192, 380
BmrFI CCNGG 3 cut(s) 72, 376, 377
BpiI GAAGAC 1 cut(s) 323
BpmI CTGGAG 1 cut(s) 93
Bpu14I TTCGAA 1 cut(s) 418
BpuMI CCSGG 2 cut(s) 376, 377
BsaAI YACGTR 1 cut(s) 632
BsaBI GATNNNNATC 1 cut(s) 189
BsaJI CCNNGG 2 cut(s) 163, 375
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 387, 582
Bse1I ACTGG 2 cut(s) 361, 430
Bse8I GATNNNNATC 1 cut(s) 189
BseBI CCWGG 1 cut(s) 72
BseDI CCNNGG 2 cut(s) 163, 375
BseGI GGATG 1 cut(s) 190
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 3 cut(s) 77, 387, 582
BseNI ACTGG 2 cut(s) 361, 430
BseSI GKGCMC 1 cut(s) 382
BseXI GCAGC 2 cut(s) 22, 79
Bsh1236I CGCG 3 cut(s) 119, 165, 345
BshFI GGCC 3 cut(s) 47, 353, 380
BsiHKCI CYCGRG 1 cut(s) 375
BsiSI CCGG 1 cut(s) 376
BslFI GGGAC 2 cut(s) 111, 676
BslI CCNNNNNNNGG 3 cut(s) 77, 387, 582
BsmAI GTCTC 1 cut(s) 115
BsmFI GGGAC 2 cut(s) 111, 676
BsnI GGCC 3 cut(s) 47, 353, 380
BsoBI CYCGRG 1 cut(s) 375
Bsp119I TTCGAA 1 cut(s) 418
Bsp120I GGGCCC 1 cut(s) 378
Bsp1286I GDGCHC 2 cut(s) 382, 589
Bsp143I GATC 4 cut(s) 114, 190, 309, 409
Bsp68I TCGCGA 1 cut(s) 119
BspACI CCGC 8 cut(s) 21, 95, 134, 163, 165, 350, 382, 407
BspANI GGCC 3 cut(s) 47, 353, 380
BspFNI CGCG 3 cut(s) 119, 165, 345
BspLI GGNNCC 2 cut(s) 192, 380
BspPI GGATC 5 cut(s) 122, 185, 198, 317, 417
BspT104I TTCGAA 1 cut(s) 418
BsrI ACTGG 2 cut(s) 361, 430
BssECI CCNNGG 2 cut(s) 163, 375
BssMI GATC 4 cut(s) 114, 190, 309, 409
Bst2UI CCWGG 1 cut(s) 72
Bst4CI ACNGT 2 cut(s) 492, 667
BstBAI YACGTR 1 cut(s) 632
BstBI TTCGAA 1 cut(s) 418
BstC8I GCNNGC 2 cut(s) 57, 382
BstDEI CTNAG 2 cut(s) 218, 477
BstDSI CCRYGG 1 cut(s) 163
BstF5I GGATG 1 cut(s) 190
BstFNI CGCG 3 cut(s) 119, 165, 345
BstKTI GATC 4 cut(s) 117, 193, 312, 412
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 4 cut(s) 114, 190, 309, 409
BstMWI GCNNNNNNNGC 3 cut(s) 44, 101, 171
BstNI CCWGG 1 cut(s) 72
BstNSI RCATGY 1 cut(s) 658
BstSCI CCNGG 3 cut(s) 70, 374, 375
BstSFI CTRYAG 1 cut(s) 105
BstSLI GKGCMC 1 cut(s) 382
BstSNI TACGTA 1 cut(s) 632
BstUI CGCG 3 cut(s) 119, 165, 345
BstV1I GCAGC 2 cut(s) 22, 79
BstV2I GAAGAC 1 cut(s) 323
BstX2I RGATCY 2 cut(s) 190, 309
BstYI RGATCY 2 cut(s) 190, 309
BsuI GTATCC 1 cut(s) 422
BsuRI GGCC 3 cut(s) 47, 353, 380
BtgI CCRYGG 1 cut(s) 163
BtsCI GGATG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 8
BtuMI TCGCGA 1 cut(s) 119
Cac8I GCNNGC 2 cut(s) 57, 382
Cfr13I GGNCC 4 cut(s) 68, 352, 378, 379
Cfr42I CCGCGG 1 cut(s) 166
Cfr9I CCCGGG 1 cut(s) 375
Csp6I GTAC 3 cut(s) 87, 633, 642
CviAII CATG 1 cut(s) 655
CviJI RGCY 8 cut(s) 47, 55, 104, 353, 374, 380, 575, 587
CviKI_1 RGCY 8 cut(s) 47, 55, 104, 353, 374, 380, 575, 587
CviQI GTAC 3 cut(s) 87, 633, 642
DdeI CTNAG 2 cut(s) 218, 477
DpnI GATC 4 cut(s) 116, 192, 311, 411
DpnII GATC 4 cut(s) 114, 190, 309, 409
EaeI YGGCCR 1 cut(s) 45
EciI GGCGGA 1 cut(s) 149
Eco105I TACGTA 1 cut(s) 632
Eco24I GRGCYC 2 cut(s) 382, 589
Eco47I GGWCC 1 cut(s) 68
Eco88I CYCGRG 1 cut(s) 375
EcoRII CCWGG 1 cut(s) 70
EcoT38I GRGCYC 2 cut(s) 382, 589
FaeI CATG 1 cut(s) 658
FaiI YATR 1 cut(s) 656
FaqI GGGAC 2 cut(s) 111, 676
FatI CATG 1 cut(s) 654
FauI CCCGC 3 cut(s) 88, 170, 389
Fnu4HI GCNGC 4 cut(s) 21, 36, 93, 351
FokI GGATG 1 cut(s) 197
FriOI GRGCYC 2 cut(s) 382, 589
Fsp4HI GCNGC 4 cut(s) 21, 36, 93, 351
FspBI CTAG 2 cut(s) 356, 590
GluI GCNGC 4 cut(s) 21, 36, 93, 351
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 3 cut(s) 47, 353, 380
HapII CCGG 1 cut(s) 376
Hin1II CATG 1 cut(s) 658
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 376
HphI GGTGA 1 cut(s) 679
Hpy188I TCNGA 3 cut(s) 334, 436, 600
Hpy188III TCNNGA 2 cut(s) 118, 313
Hpy99I CGWCG 2 cut(s) 53, 233
HpyAV CCTTC 3 cut(s) 104, 131, 224
HpyCH4III ACNGT 2 cut(s) 492, 667
HpyCH4IV ACGT 1 cut(s) 631
HpyCH4V TGCA 2 cut(s) 254, 470
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 101, 171
HpyF3I CTNAG 2 cut(s) 218, 477
HpySE526I ACGT 1 cut(s) 631
Hsp92II CATG 1 cut(s) 658
KspI CCGCGG 1 cut(s) 166
Kzo9I GATC 4 cut(s) 114, 190, 309, 409
Lsp1109I GCAGC 2 cut(s) 22, 79
MaeI CTAG 2 cut(s) 356, 590
MaeII ACGT 1 cut(s) 631
MaeIII GTNAC 1 cut(s) 259
MalI GATC 4 cut(s) 116, 192, 311, 411
MboI GATC 4 cut(s) 114, 190, 309, 409
MboII GAAGA 2 cut(s) 328, 347
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 2 cut(s) 190, 309
MhlI GDGCHC 2 cut(s) 382, 589
MluCI AATT 8 cut(s) 255, 328, 338, 452, 457, 499, 540, 620
MmeI TCCRAC 2 cut(s) 218, 345
MnlI CCTC 6 cut(s) 124, 175, 181, 262, 300, 340
MroXI GAANNNNTTC 1 cut(s) 516
MseI TTAA 3 cut(s) 278, 465, 543
MspA1I CMGCKG 1 cut(s) 165
MspI CCGG 1 cut(s) 376
MspR9I CCNGG 3 cut(s) 72, 376, 377
MunI CAATTG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 72
MvnI CGCG 3 cut(s) 119, 165, 345
MwoI GCNNNNNNNGC 3 cut(s) 44, 101, 171
NciI CCSGG 2 cut(s) 376, 377
NdeII GATC 4 cut(s) 114, 190, 309, 409
NlaIII CATG 1 cut(s) 658
NlaIV GGNNCC 2 cut(s) 192, 380
NruI TCGCGA 1 cut(s) 119
NspI RCATGY 1 cut(s) 658
NspV TTCGAA 1 cut(s) 418
PdmI GAANNNNTTC 1 cut(s) 516
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 4 cut(s) 22, 37, 94, 352
Ppu21I YACGTR 1 cut(s) 632
PshBI ATTAAT 2 cut(s) 465, 543
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 2 cut(s) 192, 380
PspOMI GGGCCC 1 cut(s) 378
PspPI GGNCC 4 cut(s) 68, 352, 378, 379
PsuI RGATCY 2 cut(s) 190, 309
RruI TCGCGA 1 cut(s) 119
RsaI GTAC 3 cut(s) 88, 634, 643
RsaNI GTAC 3 cut(s) 87, 633, 642
SacII CCGCGG 1 cut(s) 166
SaqAI TTAA 3 cut(s) 278, 465, 543
SatI GCNGC 4 cut(s) 21, 36, 93, 351
Sau3AI GATC 4 cut(s) 114, 190, 309, 409
Sau96I GGNCC 4 cut(s) 68, 352, 378, 379
ScaI AGTACT 1 cut(s) 643
ScrFI CCNGG 3 cut(s) 72, 376, 377
SduI GDGCHC 2 cut(s) 382, 589
SetI ASST 4 cut(s) 73, 88, 216, 634
SfcI CTRYAG 1 cut(s) 105
Sfr303I CCGCGG 1 cut(s) 166
SfuI TTCGAA 1 cut(s) 418
SgrBI CCGCGG 1 cut(s) 166
SinI GGWCC 1 cut(s) 68
SmaI CCCGGG 1 cut(s) 377
SnaBI TACGTA 1 cut(s) 632
SrfI GCCCGGGC 1 cut(s) 377
Sse9I AATT 8 cut(s) 255, 328, 338, 452, 457, 499, 540, 620
SsiI CCGC 8 cut(s) 21, 95, 134, 163, 165, 350, 382, 407
SspI AATATT 1 cut(s) 649
SspMI CTAG 2 cut(s) 356, 590
StyD4I CCNGG 3 cut(s) 70, 374, 375
TaaI ACNGT 2 cut(s) 492, 667
TaiI ACGT 1 cut(s) 634
TaqI TCGA 4 cut(s) 228, 298, 418, 553
TasI AATT 8 cut(s) 255, 328, 338, 452, 457, 499, 540, 620
TatI WGTACW 1 cut(s) 641
TauI GCSGC 2 cut(s) 23, 353
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 3 cut(s) 278, 465, 543
Tru9I TTAA 3 cut(s) 278, 465, 543
TscAI CASTG 1 cut(s) 15
TseI GCWGC 2 cut(s) 35, 92
TspDTI ATGAA 3 cut(s) 17, 509, 525
TspGWI ACGGA 2 cut(s) 16, 403
TspMI CCCGGG 1 cut(s) 375
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 68
VspI ATTAAT 2 cut(s) 465, 543
XapI RAATTY 2 cut(s) 328, 457
XceI RCATGY 1 cut(s) 658
XmaI CCCGGG 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 516
XspI CTAG 2 cut(s) 356, 590
ZrmI AGTACT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.