RchiOBHm_Chr4g0416071

F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0010725
Physical Location & Seq
Reverse (-)
40898798 .. 40899133
336 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38624

Sequence Viewer

Length: 336 bp
ATGTCGCGTTACAAAGGACCTCGTTTCAAAAAAAATCCATCATCTGGGGGCTTTATCGGGGCGGGATTGGCAGTCGGGCTTGTTTCTATTAGACCCGGGGTTGGTCAAGGTACCGTTGTGGGACAGGCTATAGAAGGGATCGCGAGACAACCAGACTCGGAAGGAAAAATACGAGGTACTTTCTTGCTTAGTCTAGCTTTCATGGAAGCTTTAACAATTTATGGGCTCGTTGCAGCATTAGCTCTTTTATTTTTGCGAATCCTTTTTTTTAGGGTGCTGCTATTTGCACACCCATTTTTTCTATTCACACACCCTCTCTATTATCTATTACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031976 GO:0031984 GO:0032991 GO:0033177 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042623 GO:0042625 GO:0042626 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045259 GO:0045263 GO:0046034 GO:0046390 GO:0046483 GO:0046933 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0099131 GO:0099132 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 map00190 map00195 map01100
Pfam Domains
Protein Families
ATP-synt_C

Protein Analysis

111

Amino Acids

12.09

Weight (kDa)

10.43

Isoelectric Point (pI)

26.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_C PF00137 19 - 81 8.4e-18 ATP synthase subunit C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 110
AccB7I CCANNNNNTGG 1 cut(s) 44
AccII CGCG 2 cut(s) 7, 143
AciI CCGC 1 cut(s) 62
AclWI GGATC 1 cut(s) 146
AfaI GTAC 2 cut(s) 112, 178
AfiI CCNNNNNNNGG 2 cut(s) 44, 101
AgsI TTSAA 1 cut(s) 28
AluBI AGCT 3 cut(s) 197, 209, 242
AluI AGCT 3 cut(s) 197, 209, 242
Alw26I GTCTC 1 cut(s) 139
AlwI GGATC 1 cut(s) 146
Ama87I CYCGRG 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 233, 277
Asp718I GGTACC 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 17
AsuC2I CCSGG 2 cut(s) 96, 97
AvaI CYCGRG 1 cut(s) 95
AvaII GGWCC 1 cut(s) 17
BaeI ACNNNNGTAYC 2 cut(s) 102, 135
BanI GGYRCC 1 cut(s) 110
BanII GRGCYC 1 cut(s) 228
BarI GAAGNNNNNNTAC 2 cut(s) 153, 185
BbvI GCAGC 2 cut(s) 245, 264
BccI CCATC 1 cut(s) 46
BcnI CCSGG 2 cut(s) 96, 97
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 1 cut(s) 194
BfmI CTRYAG 1 cut(s) 129
BisI GCNGC 2 cut(s) 234, 278
BlsI GCNGC 2 cut(s) 235, 279
Bme1390I CCNGG 2 cut(s) 96, 97
Bme18I GGWCC 1 cut(s) 17
BmeT110I CYCGRG 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 2 cut(s) 96, 97
BpuMI CCSGG 2 cut(s) 96, 97
BsaJI CCNNGG 2 cut(s) 95, 96
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 101
BseDI CCNNGG 2 cut(s) 95, 96
BseLI CCNNNNNNNGG 2 cut(s) 44, 101
BseXI GCAGC 2 cut(s) 245, 264
Bsh1236I CGCG 2 cut(s) 7, 143
BshNI GGYRCC 1 cut(s) 110
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 135
BslI CCNNNNNNNGG 2 cut(s) 44, 101
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 135
BsoBI CYCGRG 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 1 cut(s) 138
Bsp68I TCGCGA 1 cut(s) 143
BspACI CCGC 1 cut(s) 62
BspFNI CGCG 2 cut(s) 7, 143
BspLI GGNNCC 1 cut(s) 112
BspPI GGATC 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 110
BssECI CCNNGG 2 cut(s) 95, 96
BssMI GATC 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 188
BstFNI CGCG 2 cut(s) 7, 143
BstKTI GATC 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 2 cut(s) 68, 239
BstSCI CCNGG 2 cut(s) 94, 95
BstSFI CTRYAG 1 cut(s) 129
BstUI CGCG 2 cut(s) 7, 143
BstV1I GCAGC 2 cut(s) 245, 264
BtuMI TCGCGA 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 17
Cfr9I CCCGGG 1 cut(s) 95
Csp6I GTAC 2 cut(s) 111, 177
CviAII CATG 1 cut(s) 202
CviJI RGCY 7 cut(s) 51, 79, 128, 197, 209, 226, 242
CviKI_1 RGCY 7 cut(s) 51, 79, 128, 197, 209, 226, 242
CviQI GTAC 2 cut(s) 111, 177
DdeI CTNAG 1 cut(s) 188
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 17
Eco88I CYCGRG 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 228
FaeI CATG 1 cut(s) 205
FaiI YATR 3 cut(s) 131, 203, 222
FaqI GGGAC 1 cut(s) 135
FatI CATG 1 cut(s) 201
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 234, 278
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 2 cut(s) 234, 278
FspBI CTAG 1 cut(s) 194
GluI GCNGC 2 cut(s) 234, 278
HapII CCGG 1 cut(s) 96
Hin1II CATG 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 207
HinfI GANTC 2 cut(s) 155, 258
HpaII CCGG 1 cut(s) 96
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 1 cut(s) 142
HpyAV CCTTC 2 cut(s) 128, 155
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 2 cut(s) 233, 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 239
HpyF3I CTNAG 1 cut(s) 188
Hsp92II CATG 1 cut(s) 205
KpnI GGTACC 1 cut(s) 114
Kzo9I GATC 1 cut(s) 138
LpnPI CCDG 4 cut(s) 30, 109, 110, 165
Lsp1109I GCAGC 2 cut(s) 245, 264
MaeI CTAG 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 8
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 1 cut(s) 216
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 3 cut(s) 30, 167, 324
MseI TTAA 2 cut(s) 212, 334
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 2 cut(s) 96, 97
MvnI CGCG 2 cut(s) 7, 143
MwoI GCNNNNNNNGC 2 cut(s) 68, 239
NciI CCSGG 2 cut(s) 96, 97
NdeII GATC 1 cut(s) 138
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 1 cut(s) 112
NruI TCGCGA 1 cut(s) 143
PfeI GAWTC 1 cut(s) 258
PflMI CCANNNNNTGG 1 cut(s) 44
PkrI GCNGC 2 cut(s) 235, 279
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PpuMI RGGWCCY 1 cut(s) 17
Psp5II RGGWCCY 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 17
PspPPI RGGWCCY 1 cut(s) 17
RruI TCGCGA 1 cut(s) 143
RsaI GTAC 2 cut(s) 112, 178
RsaNI GTAC 2 cut(s) 111, 177
SaqAI TTAA 2 cut(s) 212, 334
SatI GCNGC 2 cut(s) 234, 278
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 96, 97
SduI GDGCHC 1 cut(s) 228
SetI ASST 6 cut(s) 22, 112, 178, 199, 211, 244
SfcI CTRYAG 1 cut(s) 129
SinI GGWCC 1 cut(s) 17
SmaI CCCGGG 1 cut(s) 97
Sse9I AATT 1 cut(s) 216
SsiI CCGC 1 cut(s) 62
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 2 cut(s) 94, 95
TaaI ACNGT 1 cut(s) 115
TasI AATT 1 cut(s) 216
TfiI GAWTC 1 cut(s) 258
Tru1I TTAA 2 cut(s) 212, 334
Tru9I TTAA 2 cut(s) 212, 334
TseI GCWGC 2 cut(s) 233, 277
TspDTI ATGAA 1 cut(s) 190
TspMI CCCGGG 1 cut(s) 95
Van91I CCANNNNNTGG 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 17
XmaI CCCGGG 1 cut(s) 95
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.