RchiOBHm_Chr4g0431401

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0018186
Physical Location & Seq
Forward (+)
55674271 .. 55675622
1352 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 192 bp
ATGCTCATGGCCGGTGCAAACGGCGTTTGTATCCCAATTCCCGGGATGATTCCGTCTTTACAACCGGAGAAGAATATCTTCTTCATCACCAAGGCCTTTGCCTCTGGTGTCATATTGGCCACCAGATTCATCCACATGCTTCCGGACTCCTTAGACTACTTGACCTTACCGTGCCTGAAAGAAAACCCATAG

Protein Analysis

63

Amino Acids

6.86

Weight (kDa)

6.51

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 5 - 61 1.1e-09 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018186)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0431401
rosa_laevigata RLG00000006913
rosa_multiflora Rmu_sc0017459.1_g000005
rosa_roxburghii Rroxscaffold_5G00372850
rosa_rugosa Rorug04G0250300
rosa_samantha Rh4AG306200 Rh4AG306400 Rh4BG314300 Rh4BG314400 Rh4CG329900 Rh5AG135400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 142
AcoI YGGCCR 2 cut(s) 9, 117
AfiI CCNNNNNNNGG 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 41
Aor13HI TCCGGA 1 cut(s) 142
AoxI GGCC 3 cut(s) 9, 93, 117
Asp700I GAANNNNTTC 1 cut(s) 77
AsuC2I CCSGG 2 cut(s) 42, 43
AsuHPI GGTGA 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 41
BalI TGGCCA 1 cut(s) 119
BceAI ACGGC 1 cut(s) 37
BciVI GTATCC 1 cut(s) 41
BcnI CCSGG 2 cut(s) 42, 43
BfuI GTATCC 1 cut(s) 41
Bme1390I CCNGG 2 cut(s) 42, 43
BmeT110I CYCGRG 1 cut(s) 41
BmrFI CCNGG 2 cut(s) 42, 43
BpuMI CCSGG 2 cut(s) 42, 43
BsaJI CCNNGG 2 cut(s) 41, 90
BsaWI WCCGGW 2 cut(s) 64, 142
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse118I RCCGGY 1 cut(s) 11
BseAI TCCGGA 1 cut(s) 142
BseDI CCNNGG 2 cut(s) 41, 90
BseGI GGATG 2 cut(s) 51, 129
BseLI CCNNNNNNNGG 1 cut(s) 41
BshFI GGCC 3 cut(s) 11, 95, 119
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 4 cut(s) 12, 42, 65, 143
BslI CCNNNNNNNGG 1 cut(s) 41
BsnI GGCC 3 cut(s) 11, 95, 119
BsoBI CYCGRG 1 cut(s) 41
Bsp13I TCCGGA 1 cut(s) 142
BspANI GGCC 3 cut(s) 11, 95, 119
BspEI TCCGGA 1 cut(s) 142
BsrFI RCCGGY 1 cut(s) 11
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 2 cut(s) 41, 90
BssT1I CCWWGG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 151
BstF5I GGATG 2 cut(s) 51, 129
BstNSI RCATGY 1 cut(s) 139
BstSCI CCNGG 2 cut(s) 40, 41
BsuI GTATCC 1 cut(s) 41
BsuRI GGCC 3 cut(s) 11, 95, 119
BtsCI GGATG 2 cut(s) 51, 129
Cfr10I RCCGGY 1 cut(s) 11
Cfr9I CCCGGG 1 cut(s) 41
CviAII CATG 2 cut(s) 7, 136
CviJI RGCY 3 cut(s) 11, 95, 119
CviKI_1 RGCY 3 cut(s) 11, 95, 119
DdeI CTNAG 1 cut(s) 151
EaeI YGGCCR 2 cut(s) 9, 117
Eco130I CCWWGG 1 cut(s) 90
Eco147I AGGCCT 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 41
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 2 cut(s) 10, 139
FaiI YATR 4 cut(s) 8, 113, 137, 190
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FatI CATG 2 cut(s) 6, 135
FokI GGATG 2 cut(s) 58, 116
HaeIII GGCC 3 cut(s) 11, 95, 119
HapII CCGG 4 cut(s) 12, 42, 65, 143
Hin1II CATG 2 cut(s) 10, 139
HinfI GANTC 3 cut(s) 49, 126, 146
HpaII CCGG 4 cut(s) 12, 42, 65, 143
HphI GGTGA 1 cut(s) 79
Hpy188III TCNNGA 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4V TGCA 1 cut(s) 17
HpyF3I CTNAG 1 cut(s) 151
Hsp92II CATG 2 cut(s) 10, 139
Kpn2I TCCGGA 1 cut(s) 142
LpnPI CCDG 7 cut(s) 25, 55, 78, 90, 136, 156, 188
MboII GAAGA 3 cut(s) 70, 73, 82
MlsI TGGCCA 1 cut(s) 119
MluCI AATT 1 cut(s) 36
MluNI TGGCCA 1 cut(s) 119
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 1 cut(s) 112
Mox20I TGGCCA 1 cut(s) 119
MroI TCCGGA 1 cut(s) 142
MroXI GAANNNNTTC 1 cut(s) 77
MscI TGGCCA 1 cut(s) 119
MslI CAYNNNNRTG 1 cut(s) 134
Msp20I TGGCCA 1 cut(s) 119
MspI CCGG 4 cut(s) 12, 42, 65, 143
MspR9I CCNGG 2 cut(s) 42, 43
NciI CCSGG 2 cut(s) 42, 43
NlaIII CATG 2 cut(s) 10, 139
NspI RCATGY 1 cut(s) 139
PceI AGGCCT 1 cut(s) 95
PdmI GAANNNNTTC 1 cut(s) 77
PfeI GAWTC 2 cut(s) 49, 126
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 134
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 2 cut(s) 42, 43
SetI ASST 1 cut(s) 167
SmaI CCCGGG 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 134
Sse9I AATT 1 cut(s) 36
SseBI AGGCCT 1 cut(s) 95
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 2 cut(s) 40, 41
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 171
TasI AATT 1 cut(s) 36
TfiI GAWTC 2 cut(s) 49, 126
TspDTI ATGAA 2 cut(s) 73, 118
TspGWI ACGGA 1 cut(s) 42
TspMI CCCGGG 1 cut(s) 41
XceI RCATGY 1 cut(s) 139
XmaI CCCGGG 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.