Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017459.1

Orthogroup ID

OG0018186

Physical Location & Seq

Genomic Coordinates Forward (+)

14966 .. 17913

Gene Structure 2948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017459.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atgcctgtaacgagggacagtaggattttggaacactatctcgagaaaaagaacttcgatgacacagttcacactccctatataactgcaccgcttttcatctctactcccaaccttcgcttccatacttgtggccggtgcactcggcgtttgtatcccaattctagggacgattccggttttgcaaccggagaaaaatatcttcttcatcatcaaggccttcgctgcgggtgtcatattggccaccggattcatccacatgcttccggacgctttcgaatgcttgacgtcaacgtgcctgaaagaaaatccatgagccggggaagtttcccttcaccgccatcgaactttgatggtggattccatatattaattgctactacttatttcaaaagggctcagaatcagatcaatggagagcatgaggggcacgtacatgttcatacacattccactcatggtccgcttgatacgaattcggctgaatcacagcttcttcggcacagagtgatttcaaaggttttggagttgggaattgtggtgcactcagttaatattggaatttcattgggtgcttctgtaagtgctgaaacaattcgacctcttctagctgctttgactttccatcaagtttttcaggacatatgggccacgggacttggtggttgcatggctcgggagagcaccaacctcgtcacaaggttcttttctatgccttccggaaaaggatttcttgccttacggggcgttacccttgcttcgctggtttgcaactggttgcaggtaggtttgctctggagaggctttgataatctgatcgatgaactgatgatgaagaaacctaagatggaatttatcgactacactcactacaggggtcgggaattggctggggaagaagaacggggatgttttgttgttgagaagacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

310

Amino Acids

34.94

Weight (kDa)

8.98

Isoelectric Point (pI)

39.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018186)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0431401
rosa_laevigata	RLG00000006913
rosa_multiflora	Rmu_sc0017459.1_g000005
rosa_roxburghii	Rroxscaffold_5G00372850
rosa_rugosa	Rorug04G0250300
rosa_samantha	Rh4AG306200 Rh4AG306400 Rh4BG314300 Rh4BG314400 Rh4CG329900 Rh5AG135400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	291
Acc36I	ACCTGC	1 cut(s)	772
AccIII	TCCGGA	2 cut(s)	266, 719
AciI	CCGC	4 cut(s)	92, 228, 338, 464
AcoI	YGGCCR	2 cut(s)	133, 241
AcsI	RAATTY	3 cut(s)	475, 561, 851
AcyI	GRCGYC	1 cut(s)	288
AdeI	CACNNNGTG	1 cut(s)	508
AfaI	GTAC	1 cut(s)	435
AfiI	CCNNNNNNNGG	2 cut(s)	165, 318
AflIII	ACRYGT	1 cut(s)	436
AgsI	TTSAA	2 cut(s)	391, 516
AjiI	CACGTC	1 cut(s)	930
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AluBI	AGCT	2 cut(s)	493, 611
AluI	AGCT	2 cut(s)	493, 611
Alw21I	GWGCWC	3 cut(s)	143, 546, 686
Alw44I	GTGCAC	2 cut(s)	139, 542
Ama87I	CYCGRG	2 cut(s)	41, 675
Aor13HI	TCCGGA	2 cut(s)	266, 719
AoxI	GGCC	4 cut(s)	133, 217, 241, 648
ApaLI	GTGCAC	2 cut(s)	139, 542
ApeKI	GCWGC	2 cut(s)	225, 611
ApoI	RAATTY	3 cut(s)	475, 561, 851
AseI	ATTAAT	1 cut(s)	371
Asp700I	GAANNNNTTC	1 cut(s)	594
AspS9I	GGNCC	2 cut(s)	461, 648
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	327
AsuII	TTCGAA	1 cut(s)	277
AvaI	CYCGRG	2 cut(s)	41, 675
AvaII	GGWCC	1 cut(s)	461
BaeGI	GKGCMC	3 cut(s)	143, 432, 546
BalI	TGGCCA	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	400
Bbv12I	GWGCWC	3 cut(s)	143, 546, 686
BbvI	GCAGC	2 cut(s)	212, 598
BccI	CCATC	4 cut(s)	347, 349, 633, 841
BcgI	CGANNNNNNTGC	2 cut(s)	673, 707
BciVI	GTATCC	1 cut(s)	165
BcnI	CCSGG	1 cut(s)	320
BfaI	CTAG	2 cut(s)	165, 608
BfmI	CTRYAG	1 cut(s)	871
BfuAI	ACCTGC	1 cut(s)	772
BfuI	GTATCC	1 cut(s)	165
BisI	GCNGC	2 cut(s)	226, 612
BlsI	GCNGC	2 cut(s)	227, 613
Bme1390I	CCNGG	1 cut(s)	320
Bme18I	GGWCC	1 cut(s)	461
BmeT110I	CYCGRG	2 cut(s)	41, 675
BmgBI	CACGTC	1 cut(s)	930
BmgT120I	GGNCC	2 cut(s)	461, 648
BmrFI	CCNGG	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	817
Bpu14I	TTCGAA	1 cut(s)	277
BpuMI	CCSGG	1 cut(s)	320
Bsa29I	ATCGAT	1 cut(s)	819
BsaAI	YACGTR	1 cut(s)	433
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	319, 651
BsaWI	WCCGGW	5 cut(s)	176, 188, 246, 266, 719
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 318
Bse118I	RCCGGY	1 cut(s)	135
Bse1I	ACTGG	1 cut(s)	779
BseAI	TCCGGA	2 cut(s)	266, 719
BseCI	ATCGAT	1 cut(s)	819
BseDI	CCNNGG	2 cut(s)	319, 651
BseGI	GGATG	2 cut(s)	253, 914
BseLI	CCNNNNNNNGG	2 cut(s)	165, 318
BseMII	CTCAG	2 cut(s)	413, 561
BseNI	ACTGG	1 cut(s)	779
BseSI	GKGCMC	3 cut(s)	143, 432, 546
BseXI	GCAGC	2 cut(s)	212, 598
BseYI	CCCAGC	1 cut(s)	890
BsgI	GTGCAG	1 cut(s)	72
BshFI	GGCC	4 cut(s)	135, 219, 243, 650
BshVI	ATCGAT	1 cut(s)	819
BsiHKAI	GWGCWC	3 cut(s)	143, 546, 686
BsiHKCI	CYCGRG	2 cut(s)	41, 675
BsiSI	CCGG	7 cut(s)	136, 177, 189, 247, 267, 319, 720
BslFI	GGGAC	3 cut(s)	29, 182, 669
BslI	CCNNNNNNNGG	2 cut(s)	165, 318
BsmFI	GGGAC	3 cut(s)	29, 182, 669
BsmI	GAATGC	1 cut(s)	285
BsnI	GGCC	4 cut(s)	135, 219, 243, 650
BsoBI	CYCGRG	2 cut(s)	41, 675
Bsp119I	TTCGAA	1 cut(s)	277
Bsp1286I	GDGCHC	5 cut(s)	143, 400, 432, 546, 686
Bsp13I	TCCGGA	2 cut(s)	266, 719
Bsp143I	GATC	2 cut(s)	408, 816
BspACI	CCGC	4 cut(s)	92, 228, 338, 464
BspANI	GGCC	4 cut(s)	135, 219, 243, 650
BspCNI	CTCAG	2 cut(s)	412, 560
BspDI	ATCGAT	1 cut(s)	819
BspEI	TCCGGA	2 cut(s)	266, 719
BspMI	ACCTGC	1 cut(s)	772
BspT104I	TTCGAA	1 cut(s)	277
BsrFI	RCCGGY	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	779
BssAI	RCCGGY	1 cut(s)	135
BssECI	CCNNGG	2 cut(s)	319, 651
BssMI	GATC	2 cut(s)	408, 816
BssNI	GRCGYC	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	20, 67
Bst6I	CTCTTC	1 cut(s)	609
BstACI	GRCGYC	1 cut(s)	288
BstBAI	YACGTR	1 cut(s)	433
BstBI	TTCGAA	1 cut(s)	277
BstDEI	CTNAG	3 cut(s)	399, 547, 843
BstDSI	CCRYGG	1 cut(s)	651
BstF5I	GGATG	2 cut(s)	253, 914
BstKTI	GATC	2 cut(s)	411, 819
BstMBI	GATC	2 cut(s)	408, 816
BstMWI	GCNNNNNNNGC	3 cut(s)	225, 427, 499
BstNSI	RCATGY	2 cut(s)	263, 440
BstSCI	CCNGG	1 cut(s)	318
BstSFI	CTRYAG	1 cut(s)	871
BstSLI	GKGCMC	3 cut(s)	143, 432, 546
BstV1I	GCAGC	2 cut(s)	212, 598
BstXI	CCANNNNNNTGG	1 cut(s)	131
Bsu15I	ATCGAT	1 cut(s)	819
BsuI	GTATCC	1 cut(s)	165
BsuRI	GGCC	4 cut(s)	135, 219, 243, 650
BsuTUI	ATCGAT	1 cut(s)	819
BtgI	CCRYGG	1 cut(s)	651
BtrI	CACGTC	1 cut(s)	930
BtsCI	GGATG	2 cut(s)	253, 914
BveI	ACCTGC	1 cut(s)	772
Cfr10I	RCCGGY	1 cut(s)	135
Cfr13I	GGNCC	2 cut(s)	461, 648
ClaI	ATCGAT	1 cut(s)	819
CseI	GACGC	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	434
CspCI	CAANNNNNGTGG	2 cut(s)	640, 675
CviAII	CATG	6 cut(s)	260, 313, 422, 437, 458, 670
CviQI	GTAC	1 cut(s)	434
DdeI	CTNAG	3 cut(s)	399, 547, 843
DpnI	GATC	2 cut(s)	410, 818
DpnII	GATC	2 cut(s)	408, 816
DraIII	CACNNNGTG	1 cut(s)	508
EaeI	YGGCCR	2 cut(s)	133, 241
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
Eco147I	AGGCCT	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	461
Eco88I	CYCGRG	2 cut(s)	41, 675
EcoRI	GAATTC	1 cut(s)	475
EcoT38I	GRGCYC	1 cut(s)	400
FaeI	CATG	6 cut(s)	263, 316, 425, 440, 461, 673
FalI	AAGNNNNNCTT	4 cut(s)	316, 348, 717, 749
FaqI	GGGAC	3 cut(s)	29, 182, 669
FatI	CATG	6 cut(s)	259, 312, 421, 436, 457, 669
FauI	CCCGC	1 cut(s)	221
FauNDI	CATATG	1 cut(s)	644
Fnu4HI	GCNGC	2 cut(s)	226, 612
FokI	GGATG	2 cut(s)	240, 921
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	2 cut(s)	226, 612
FspBI	CTAG	2 cut(s)	165, 608
GluI	GCNGC	2 cut(s)	226, 612
GsaI	CCCAGC	1 cut(s)	894
GsuI	CTGGAG	1 cut(s)	817
HaeIII	GGCC	4 cut(s)	135, 219, 243, 650
HapII	CCGG	7 cut(s)	136, 177, 189, 247, 267, 319, 720
HgaI	GACGC	1 cut(s)	279
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	6 cut(s)	263, 316, 425, 440, 461, 673
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	5 cut(s)	173, 250, 360, 403, 485
HpaII	CCGG	7 cut(s)	136, 177, 189, 247, 267, 319, 720
HphI	GGTGA	1 cut(s)	327
Hpy166II	GTNNAC	4 cut(s)	70, 141, 292, 544
Hpy188I	TCNGA	3 cut(s)	402, 408, 816
Hpy188III	TCNNGA	8 cut(s)	41, 43, 267, 638, 677, 720, 796, 881
Hpy8I	GTNNAC	4 cut(s)	70, 141, 292, 544
HpyAV	CCTTC	4 cut(s)	125, 230, 342, 726
HpyCH4III	ACNGT	2 cut(s)	20, 67
HpyCH4IV	ACGT	4 cut(s)	288, 294, 432, 929
HpyCH4V	TGCA	7 cut(s)	89, 141, 185, 544, 669, 771, 781
HpyF10VI	GCNNNNNNNGC	3 cut(s)	225, 427, 499
HpyF3I	CTNAG	3 cut(s)	399, 547, 843
HpySE526I	ACGT	4 cut(s)	288, 294, 432, 929
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	6 cut(s)	263, 316, 425, 440, 461, 673
Kpn2I	TCCGGA	2 cut(s)	266, 719
Kzo9I	GATC	2 cut(s)	408, 816
Lsp1109I	GCAGC	2 cut(s)	212, 598
MaeI	CTAG	2 cut(s)	165, 608
MaeII	ACGT	4 cut(s)	288, 294, 432, 929
MaeIII	GTNAC	3 cut(s)	7, 694, 748
MalI	GATC	2 cut(s)	410, 818
MboI	GATC	2 cut(s)	408, 816
MboII	GAAGA	7 cut(s)	194, 197, 488, 596, 847, 908, 911
MhlI	GDGCHC	5 cut(s)	143, 400, 432, 546, 686
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	8 cut(s)	160, 372, 475, 534, 561, 594, 851, 884
MluNI	TGGCCA	1 cut(s)	243
MnlI	CCTC	5 cut(s)	6, 418, 612, 701, 794
Mox20I	TGGCCA	1 cut(s)	243
MroI	TCCGGA	2 cut(s)	266, 719
MroXI	GAANNNNTTC	1 cut(s)	594
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	2 cut(s)	371, 552
MslI	CAYNNNNRTG	3 cut(s)	129, 258, 435
Msp20I	TGGCCA	1 cut(s)	243
MspI	CCGG	7 cut(s)	136, 177, 189, 247, 267, 319, 720
MspR9I	CCNGG	1 cut(s)	320
Mva1269I	GAATGC	1 cut(s)	285
MwoI	GCNNNNNNNGC	3 cut(s)	225, 427, 499
NciI	CCSGG	1 cut(s)	320
NdeI	CATATG	1 cut(s)	644
NdeII	GATC	2 cut(s)	408, 816
NlaIII	CATG	6 cut(s)	263, 316, 425, 440, 461, 673
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	694
NspI	RCATGY	2 cut(s)	263, 440
NspV	TTCGAA	1 cut(s)	277
PaeR7I	CTCGAG	1 cut(s)	41
PceI	AGGCCT	1 cut(s)	219
PciI	ACATGT	1 cut(s)	436
PctI	GAATGC	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	5 cut(s)	173, 250, 360, 403, 485
PkrI	GCNGC	2 cut(s)	227, 613
Ppu21I	YACGTR	1 cut(s)	433
PscI	ACATGT	1 cut(s)	436
PshBI	ATTAAT	1 cut(s)	371
PspFI	CCCAGC	1 cut(s)	890
PspPI	GGNCC	2 cut(s)	461, 648
RsaI	GTAC	1 cut(s)	435
RsaNI	GTAC	1 cut(s)	434
RseI	CAYNNNNRTG	3 cut(s)	129, 258, 435
SaqAI	TTAA	2 cut(s)	371, 552
SatI	GCNGC	2 cut(s)	226, 612
Sau3AI	GATC	2 cut(s)	408, 816
Sau96I	GGNCC	2 cut(s)	461, 648
ScrFI	CCNGG	1 cut(s)	320
SduI	GDGCHC	5 cut(s)	143, 400, 432, 546, 686
SfcI	CTRYAG	1 cut(s)	871
Sfr274I	CTCGAG	1 cut(s)	41
SfuI	TTCGAA	1 cut(s)	277
SinI	GGWCC	1 cut(s)	461
SlaI	CTCGAG	1 cut(s)	41
SmiMI	CAYNNNNRTG	3 cut(s)	129, 258, 435
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	8 cut(s)	160, 372, 475, 534, 561, 594, 851, 884
SseBI	AGGCCT	1 cut(s)	219
SsiI	CCGC	4 cut(s)	92, 228, 338, 464
SspI	AATATT	1 cut(s)	556
SspMI	CTAG	2 cut(s)	165, 608
StuI	AGGCCT	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	20, 67
TaiI	ACGT	4 cut(s)	291, 297, 435, 932
TaqI	TCGA	7 cut(s)	42, 57, 277, 344, 598, 819, 858
TasI	AATT	8 cut(s)	160, 372, 475, 534, 561, 594, 851, 884
TfiI	GAWTC	5 cut(s)	173, 250, 360, 403, 485
Tru1I	TTAA	2 cut(s)	371, 552
Tru9I	TTAA	2 cut(s)	371, 552
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	2 cut(s)	225, 611
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	7 cut(s)	88, 197, 242, 431, 555, 837, 848
VneI	GTGCAC	2 cut(s)	139, 542
VpaK11BI	GGWCC	1 cut(s)	461
VspI	ATTAAT	1 cut(s)	371
XapI	RAATTY	3 cut(s)	475, 561, 851
XceI	RCATGY	2 cut(s)	263, 440
XhoI	CTCGAG	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	594
XspI	CTAG	2 cut(s)	165, 608
ZraI	GACGTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.