RLG00000006913

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018186
Physical Location & Seq
Reverse (-)
11811400 .. 11812039
640 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006913

Sequence Viewer

Length: 564 bp
ATGGCCGGTGCAATCGGCGTTTGTATCCCAATTCTAGGGATGATTCCGTCTTTGCAACCAAAGAAGAATATCTTCTTCATCATCAAGGCCTTTGCCTCTGGTGTCATATTGGCCACCAGATTCATCCACATGCTTCCGGACTCTTTCGACTGCTTGACCTCACTGCCTGAAAGAAAACCCATAGGGGAAATTACCCCTCACCTCCATCGAAACTTTGATGGTGGATTCCATATAATAATTGCTACTTCTTACTTCAAAAAGGCTCAGAATCAGATCAATGGAGAGCATGAGGGGCACGTACATGTTCATACACATGCCACTCACGGTTCGCTTGATACGAATTCGGCTGAATCACAACTTCTTGGGCACAGAGTGATTTCAAAGGTTTTGGAGTTGGGAATTGTGGTGCACTCAGTTAATATTGGAATTTCATTGGGTGCTTCTGAAAGTGCTGAAACAATTCGACCTCTTCTAGTTGCTTTGACTTTCCATCAAGTTTTTGAAGGCATGGGCCATGGGACTTGGTGGTTGCATAGCTCAGGCAATTTCTCCCCCAGTTACTGA

Protein Analysis

188

Amino Acids

20.39

Weight (kDa)

6.95

Isoelectric Point (pI)

29.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 2 - 59 6.8e-10 ZIP Zinc transporter
Zip PF02535 90 - 174 3.6e-15 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018186)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0431401
rosa_laevigata RLG00000006913
rosa_multiflora Rmu_sc0017459.1_g000005
rosa_roxburghii Rroxscaffold_5G00372850
rosa_rugosa Rorug04G0250300
rosa_samantha Rh4AG306200 Rh4AG306400 Rh4BG314300 Rh4BG314400 Rh4CG329900 Rh5AG135400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 136
AcoI YGGCCR 2 cut(s) 3, 111
AcsI RAATTY 2 cut(s) 340, 426
AdeI CACNNNGTG 1 cut(s) 373
AfaI GTAC 1 cut(s) 300
AfiI CCNNNNNNNGG 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 301
AgsI TTSAA 3 cut(s) 256, 381, 503
AluBI AGCT 1 cut(s) 537
AluI AGCT 1 cut(s) 537
Alw21I GWGCWC 1 cut(s) 411
Alw44I GTGCAC 1 cut(s) 407
AlwNI CAGNNNCTG 1 cut(s) 561
Aor13HI TCCGGA 1 cut(s) 136
AoxI GGCC 4 cut(s) 3, 87, 111, 511
ApaLI GTGCAC 1 cut(s) 407
ApoI RAATTY 2 cut(s) 340, 426
Asp700I GAANNNNTTC 2 cut(s) 71, 459
AspS9I GGNCC 1 cut(s) 511
AsuHPI GGTGA 1 cut(s) 191
BaeGI GKGCMC 3 cut(s) 297, 369, 411
BalI TGGCCA 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 411
BccI CCATC 3 cut(s) 212, 213, 498
BciVI GTATCC 1 cut(s) 35
BfaI CTAG 2 cut(s) 35, 473
BfuI GTATCC 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 511
BmrI ACTGGG 1 cut(s) 549
BmuI ACTGGG 1 cut(s) 549
Bpu10I CCTNAGC 1 cut(s) 538
BsaAI YACGTR 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 514
BsaWI WCCGGW 1 cut(s) 136
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 555
BseAI TCCGGA 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 514
BseGI GGATG 2 cut(s) 45, 123
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMII CTCAG 3 cut(s) 278, 426, 552
BseNI ACTGG 1 cut(s) 555
BseSI GKGCMC 3 cut(s) 297, 369, 411
BshFI GGCC 4 cut(s) 5, 89, 113, 513
BsiHKAI GWGCWC 1 cut(s) 411
BsiSI CCGG 2 cut(s) 6, 137
BslFI GGGAC 1 cut(s) 532
BslI CCNNNNNNNGG 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 532
BsnI GGCC 4 cut(s) 5, 89, 113, 513
Bsp1286I GDGCHC 3 cut(s) 297, 369, 411
Bsp13I TCCGGA 1 cut(s) 136
Bsp143I GATC 1 cut(s) 273
Bsp19I CCATGG 1 cut(s) 514
BspANI GGCC 4 cut(s) 5, 89, 113, 513
BspCNI CTCAG 3 cut(s) 277, 425, 551
BspEI TCCGGA 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 1 cut(s) 555
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 514
BssMI GATC 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 514
Bst4CI ACNGT 1 cut(s) 326
Bst6I CTCTTC 1 cut(s) 474
BstBAI YACGTR 1 cut(s) 298
BstDEI CTNAG 3 cut(s) 264, 412, 538
BstDSI CCRYGG 1 cut(s) 514
BstF5I GGATG 2 cut(s) 45, 123
BstKTI GATC 1 cut(s) 276
BstMBI GATC 1 cut(s) 273
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstNSI RCATGY 3 cut(s) 133, 305, 317
BstSLI GKGCMC 3 cut(s) 297, 369, 411
BsuI GTATCC 1 cut(s) 35
BsuRI GGCC 4 cut(s) 5, 89, 113, 513
BtgI CCRYGG 1 cut(s) 514
BtsCI GGATG 2 cut(s) 45, 123
BtsI GCAGTG 1 cut(s) 161
BtsIMutI CAGTG 1 cut(s) 161
CaiI CAGNNNCTG 1 cut(s) 561
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 1 cut(s) 511
Csp6I GTAC 1 cut(s) 299
CviAII CATG 6 cut(s) 130, 287, 302, 314, 508, 515
CviJI RGCY 7 cut(s) 5, 89, 113, 263, 347, 513, 537
CviKI_1 RGCY 7 cut(s) 5, 89, 113, 263, 347, 513, 537
CviQI GTAC 1 cut(s) 299
DdeI CTNAG 3 cut(s) 264, 412, 538
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
DraIII CACNNNGTG 1 cut(s) 373
EaeI YGGCCR 2 cut(s) 3, 111
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Eco130I CCWWGG 1 cut(s) 514
Eco147I AGGCCT 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 514
ErhI CCWWGG 1 cut(s) 514
FaeI CATG 6 cut(s) 133, 290, 305, 317, 511, 518
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FaqI GGGAC 1 cut(s) 532
FatI CATG 6 cut(s) 129, 286, 301, 313, 507, 514
FokI GGATG 2 cut(s) 52, 110
FspBI CTAG 2 cut(s) 35, 473
HaeIII GGCC 4 cut(s) 5, 89, 113, 513
HapII CCGG 2 cut(s) 6, 137
Hin1II CATG 6 cut(s) 133, 290, 305, 317, 511, 518
HinfI GANTC 6 cut(s) 43, 120, 140, 225, 268, 350
HpaII CCGG 2 cut(s) 6, 137
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 3 cut(s) 267, 273, 445
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 1 cut(s) 409
HpyAV CCTTC 1 cut(s) 497
HpyCH4III ACNGT 1 cut(s) 326
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 4 cut(s) 11, 55, 409, 532
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
HpyF3I CTNAG 3 cut(s) 264, 412, 538
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 6 cut(s) 133, 290, 305, 317, 511, 518
Kpn2I TCCGGA 1 cut(s) 136
Kzo9I GATC 1 cut(s) 273
LpnPI CCDG 6 cut(s) 19, 84, 130, 150, 180, 525
MaeI CTAG 2 cut(s) 35, 473
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 1 cut(s) 557
MalI GATC 1 cut(s) 275
MboI GATC 1 cut(s) 273
MboII GAAGA 4 cut(s) 64, 67, 76, 461
MhlI GDGCHC 3 cut(s) 297, 369, 411
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 8 cut(s) 30, 189, 237, 340, 399, 426, 459, 544
MluNI TGGCCA 1 cut(s) 113
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 6 cut(s) 106, 169, 207, 212, 283, 477
Mox20I TGGCCA 1 cut(s) 113
MroI TCCGGA 1 cut(s) 136
MroXI GAANNNNTTC 2 cut(s) 71, 459
MscI TGGCCA 1 cut(s) 113
MseI TTAA 1 cut(s) 417
MslI CAYNNNNRTG 3 cut(s) 128, 300, 312
Msp20I TGGCCA 1 cut(s) 113
MspI CCGG 2 cut(s) 6, 137
MwoI GCNNNNNNNGC 1 cut(s) 292
NcoI CCATGG 1 cut(s) 514
NdeII GATC 1 cut(s) 273
NlaIII CATG 6 cut(s) 133, 290, 305, 317, 511, 518
NspI RCATGY 3 cut(s) 133, 305, 317
PceI AGGCCT 1 cut(s) 89
PciI ACATGT 1 cut(s) 301
PcsI WCGNNNNNNNCGW 1 cut(s) 335
PdmI GAANNNNTTC 2 cut(s) 71, 459
PfeI GAWTC 5 cut(s) 43, 120, 225, 268, 350
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Ppu21I YACGTR 1 cut(s) 298
PscI ACATGT 1 cut(s) 301
PspPI GGNCC 1 cut(s) 511
PstNI CAGNNNCTG 1 cut(s) 561
RsaI GTAC 1 cut(s) 300
RsaNI GTAC 1 cut(s) 299
RseI CAYNNNNRTG 3 cut(s) 128, 300, 312
SaqAI TTAA 1 cut(s) 417
Sau3AI GATC 1 cut(s) 273
Sau96I GGNCC 1 cut(s) 511
SchI GAGTC 1 cut(s) 134
SduI GDGCHC 3 cut(s) 297, 369, 411
SetI ASST 6 cut(s) 161, 204, 300, 387, 469, 539
SmiMI CAYNNNNRTG 3 cut(s) 128, 300, 312
Sse9I AATT 8 cut(s) 30, 189, 237, 340, 399, 426, 459, 544
SseBI AGGCCT 1 cut(s) 89
SspI AATATT 1 cut(s) 421
SspMI CTAG 2 cut(s) 35, 473
StuI AGGCCT 1 cut(s) 89
StyI CCWWGG 1 cut(s) 514
TaaI ACNGT 1 cut(s) 326
TaiI ACGT 1 cut(s) 300
TaqI TCGA 3 cut(s) 147, 208, 463
TasI AATT 8 cut(s) 30, 189, 237, 340, 399, 426, 459, 544
TfiI GAWTC 5 cut(s) 43, 120, 225, 268, 350
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 1 cut(s) 168
TspDTI ATGAA 4 cut(s) 67, 112, 296, 420
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 1 cut(s) 168
VneI GTGCAC 1 cut(s) 407
XapI RAATTY 2 cut(s) 340, 426
XceI RCATGY 3 cut(s) 133, 305, 317
XmnI GAANNNNTTC 2 cut(s) 71, 459
XspI CTAG 2 cut(s) 35, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.