Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0018186

Physical Location & Seq

Genomic Coordinates Forward (+)

13823074 .. 13823891

Gene Structure 818 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG135400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCCTGTAACGAGGGACAGTCGGATTTTGGAACACTATCTCGAGAAAAAGAACTTCGATGATACAGTTCACACTCCCTATATAACTGCACCGCTTTTCGTCTCTACTCCCAACCTTCGCTTCCATACTTGTGGCCGGTGCACTCGGCGTTTGTATCCCAATTCTAGGGACGATTCCGGTTTTGCAACCGGAGAAAAATATCTTCTTCATCATCAAGGCCTTCGCTGTGGGTGTCATATTGGCCACCGGATTCATCCACATGCTTCCGGACGCTTTCGAATGCTTGACGTCAACGTGCCTGAAAGAAAATCCATGAGCCGGGGAAGTTTCCCTTCACCGCCATCGAACTTTGATGGTGGATTCCATATATTAATTGCTAGTTTGCTACTACTTATTTCAAAAAGGCTCGATCAGAATCAGATCAATGGAGAGCATGAGGGGCACGTACATGTTCATACACATTCCACTCATGGTCCGCTTGATACGAATTCGGCTGAATCACAGCTTCTTCGGCACAGAGTGATTTCAAAGGTTTTGGAGTTGGGAATTGTGGTGCACTCAGTTAATATTGGAATTTCATTGGGTGCTTCTGTAAGTGCTGAAACAATTCGACCTCTTCTAGCTGCTTTGACTTTCCATCAAGTTTTTCAGGACATATGGGCCATGGGACTTGGTGGTTGCATGGCTCGGGTAATTTCTCCCCCAATTACTGACGCTCTGTCTGGATGGCAACATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

246

Amino Acids

27.4

Weight (kDa)

8.67

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	140 - 230	8.4e-15	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018186)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0431401
rosa_laevigata	RLG00000006913
rosa_multiflora	Rmu_sc0017459.1_g000005
rosa_roxburghii	Rroxscaffold_5G00372850
rosa_rugosa	Rorug04G0250300
rosa_samantha	Rh4AG306200 Rh4AG306400 Rh4BG314300 Rh4BG314400 Rh4CG329900 Rh5AG135400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	291
AccIII	TCCGGA	1 cut(s)	266
AciI	CCGC	3 cut(s)	92, 338, 476
AcoI	YGGCCR	2 cut(s)	133, 241
AcsI	RAATTY	2 cut(s)	487, 573
AcyI	GRCGYC	1 cut(s)	288
AdeI	CACNNNGTG	1 cut(s)	520
AfaI	GTAC	1 cut(s)	447
AfiI	CCNNNNNNNGG	2 cut(s)	165, 318
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	2 cut(s)	399, 528
AhdI	GACNNNNNGTC	1 cut(s)	718
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AluBI	AGCT	2 cut(s)	505, 623
AluI	AGCT	2 cut(s)	505, 623
Alw21I	GWGCWC	2 cut(s)	143, 558
Alw26I	GTCTC	1 cut(s)	106
Alw44I	GTGCAC	2 cut(s)	139, 554
Ama87I	CYCGRG	2 cut(s)	41, 687
Aor13HI	TCCGGA	1 cut(s)	266
AoxI	GGCC	4 cut(s)	133, 217, 241, 660
ApaLI	GTGCAC	2 cut(s)	139, 554
ApeKI	GCWGC	1 cut(s)	623
ApoI	RAATTY	2 cut(s)	487, 573
AseI	ATTAAT	1 cut(s)	371
Asp700I	GAANNNNTTC	1 cut(s)	606
AspS9I	GGNCC	2 cut(s)	473, 660
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	327
AsuII	TTCGAA	1 cut(s)	277
AvaI	CYCGRG	2 cut(s)	41, 687
AvaII	GGWCC	1 cut(s)	473
BaeGI	GKGCMC	3 cut(s)	143, 444, 558
BalI	TGGCCA	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	143, 558
BbvI	GCAGC	1 cut(s)	610
BccI	CCATC	4 cut(s)	347, 349, 645, 720
BciVI	GTATCC	1 cut(s)	165
BcnI	CCSGG	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	3 cut(s)	165, 378, 620
BfuI	GTATCC	1 cut(s)	165
BisI	GCNGC	1 cut(s)	624
BlsI	GCNGC	1 cut(s)	625
Bme1390I	CCNGG	1 cut(s)	320
Bme18I	GGWCC	1 cut(s)	473
BmeRI	GACNNNNNGTC	1 cut(s)	718
BmeT110I	CYCGRG	2 cut(s)	41, 687
BmgT120I	GGNCC	2 cut(s)	473, 660
BmrFI	CCNGG	1 cut(s)	320
Bpu14I	TTCGAA	1 cut(s)	277
BpuMI	CCSGG	1 cut(s)	320
BsaAI	YACGTR	1 cut(s)	445
BsaBI	GATNNNNATC	1 cut(s)	414
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	319, 663
BsaWI	WCCGGW	4 cut(s)	176, 188, 246, 266
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 318
Bse118I	RCCGGY	1 cut(s)	135
Bse8I	GATNNNNATC	1 cut(s)	414
BseAI	TCCGGA	1 cut(s)	266
BseDI	CCNNGG	2 cut(s)	319, 663
BseGI	GGATG	2 cut(s)	253, 731
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	2 cut(s)	165, 318
BseMII	CTCAG	1 cut(s)	573
BseSI	GKGCMC	3 cut(s)	143, 444, 558
BseXI	GCAGC	1 cut(s)	610
BsgI	GTGCAG	1 cut(s)	72
BshFI	GGCC	4 cut(s)	135, 219, 243, 662
BsiHKAI	GWGCWC	2 cut(s)	143, 558
BsiHKCI	CYCGRG	2 cut(s)	41, 687
BsiSI	CCGG	6 cut(s)	136, 177, 189, 247, 267, 319
BslFI	GGGAC	3 cut(s)	29, 182, 681
BslI	CCNNNNNNNGG	2 cut(s)	165, 318
BsmAI	GTCTC	1 cut(s)	106
BsmBI	CGTCTC	1 cut(s)	106
BsmFI	GGGAC	3 cut(s)	29, 182, 681
BsmI	GAATGC	1 cut(s)	285
BsnI	GGCC	4 cut(s)	135, 219, 243, 662
BsoBI	CYCGRG	2 cut(s)	41, 687
Bsp119I	TTCGAA	1 cut(s)	277
Bsp1286I	GDGCHC	3 cut(s)	143, 444, 558
Bsp13I	TCCGGA	1 cut(s)	266
Bsp143I	GATC	2 cut(s)	409, 420
Bsp19I	CCATGG	1 cut(s)	663
BspACI	CCGC	3 cut(s)	92, 338, 476
BspANI	GGCC	4 cut(s)	135, 219, 243, 662
BspCNI	CTCAG	1 cut(s)	572
BspEI	TCCGGA	1 cut(s)	266
BspT104I	TTCGAA	1 cut(s)	277
BsrFI	RCCGGY	1 cut(s)	135
BssAI	RCCGGY	1 cut(s)	135
BssECI	CCNNGG	2 cut(s)	319, 663
BssMI	GATC	2 cut(s)	409, 420
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	663
Bst4CI	ACNGT	2 cut(s)	20, 67
Bst6I	CTCTTC	1 cut(s)	621
BstACI	GRCGYC	1 cut(s)	288
BstBAI	YACGTR	1 cut(s)	445
BstBI	TTCGAA	1 cut(s)	277
BstDEI	CTNAG	1 cut(s)	559
BstDSI	CCRYGG	1 cut(s)	663
BstF5I	GGATG	2 cut(s)	253, 731
BstKTI	GATC	2 cut(s)	412, 423
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	2 cut(s)	409, 420
BstMWI	GCNNNNNNNGC	2 cut(s)	439, 511
BstNSI	RCATGY	2 cut(s)	263, 452
BstSCI	CCNGG	1 cut(s)	318
BstSLI	GKGCMC	3 cut(s)	143, 444, 558
BstV1I	GCAGC	1 cut(s)	610
BstXI	CCANNNNNNTGG	1 cut(s)	131
BsuI	GTATCC	1 cut(s)	165
BsuRI	GGCC	4 cut(s)	135, 219, 243, 662
BtgI	CCRYGG	1 cut(s)	663
BtsCI	GGATG	2 cut(s)	253, 731
Cfr10I	RCCGGY	1 cut(s)	135
Cfr13I	GGNCC	2 cut(s)	473, 660
CseI	GACGC	2 cut(s)	279, 722
Csp6I	GTAC	1 cut(s)	446
CviAII	CATG	8 cut(s)	260, 313, 434, 449, 470, 664, 682, 734
CviQI	GTAC	1 cut(s)	446
DdeI	CTNAG	1 cut(s)	559
DpnI	GATC	2 cut(s)	411, 422
DpnII	GATC	2 cut(s)	409, 420
DraIII	CACNNNGTG	1 cut(s)	520
DriI	GACNNNNNGTC	1 cut(s)	718
EaeI	YGGCCR	2 cut(s)	133, 241
Eam1104I	CTCTTC	1 cut(s)	621
Eam1105I	GACNNNNNGTC	1 cut(s)	718
EarI	CTCTTC	1 cut(s)	621
Eco130I	CCWWGG	1 cut(s)	663
Eco147I	AGGCCT	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	473
Eco88I	CYCGRG	2 cut(s)	41, 687
EcoRI	GAATTC	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	663
ErhI	CCWWGG	1 cut(s)	663
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	8 cut(s)	263, 316, 437, 452, 473, 667, 685, 737
FalI	AAGNNNNNCTT	2 cut(s)	316, 348
FaqI	GGGAC	3 cut(s)	29, 182, 681
FatI	CATG	8 cut(s)	259, 312, 433, 448, 469, 663, 681, 733
FauNDI	CATATG	1 cut(s)	656
Fnu4HI	GCNGC	1 cut(s)	624
FokI	GGATG	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	624
FspBI	CTAG	3 cut(s)	165, 378, 620
GluI	GCNGC	1 cut(s)	624
HaeIII	GGCC	4 cut(s)	135, 219, 243, 662
HapII	CCGG	6 cut(s)	136, 177, 189, 247, 267, 319
HgaI	GACGC	2 cut(s)	279, 722
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	8 cut(s)	263, 316, 437, 452, 473, 667, 685, 737
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	5 cut(s)	173, 250, 360, 415, 497
HpaII	CCGG	6 cut(s)	136, 177, 189, 247, 267, 319
HphI	GGTGA	1 cut(s)	327
Hpy166II	GTNNAC	4 cut(s)	70, 141, 292, 556
Hpy188I	TCNGA	3 cut(s)	24, 414, 420
Hpy188III	TCNNGA	5 cut(s)	41, 43, 267, 650, 723
Hpy8I	GTNNAC	4 cut(s)	70, 141, 292, 556
HpyAV	CCTTC	3 cut(s)	125, 230, 342
HpyCH4III	ACNGT	2 cut(s)	20, 67
HpyCH4IV	ACGT	3 cut(s)	288, 294, 444
HpyCH4V	TGCA	5 cut(s)	89, 141, 185, 556, 681
HpyF10VI	GCNNNNNNNGC	2 cut(s)	439, 511
HpyF3I	CTNAG	1 cut(s)	559
HpySE526I	ACGT	3 cut(s)	288, 294, 444
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	8 cut(s)	263, 316, 437, 452, 473, 667, 685, 737
Kpn2I	TCCGGA	1 cut(s)	266
Kzo9I	GATC	2 cut(s)	409, 420
Lsp1109I	GCAGC	1 cut(s)	610
MaeI	CTAG	3 cut(s)	165, 378, 620
MaeII	ACGT	3 cut(s)	288, 294, 444
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	2 cut(s)	411, 422
MboI	GATC	2 cut(s)	409, 420
MboII	GAAGA	4 cut(s)	194, 197, 500, 608
MhlI	GDGCHC	3 cut(s)	143, 444, 558
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	8 cut(s)	160, 372, 487, 546, 573, 606, 693, 705
MluNI	TGGCCA	1 cut(s)	243
MnlI	CCTC	3 cut(s)	6, 430, 624
Mox20I	TGGCCA	1 cut(s)	243
MroI	TCCGGA	1 cut(s)	266
MroXI	GAANNNNTTC	1 cut(s)	606
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	2 cut(s)	371, 564
MslI	CAYNNNNRTG	3 cut(s)	129, 258, 447
Msp20I	TGGCCA	1 cut(s)	243
MspI	CCGG	6 cut(s)	136, 177, 189, 247, 267, 319
MspR9I	CCNGG	1 cut(s)	320
Mva1269I	GAATGC	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	439, 511
NciI	CCSGG	1 cut(s)	320
NcoI	CCATGG	1 cut(s)	663
NdeI	CATATG	1 cut(s)	656
NdeII	GATC	2 cut(s)	409, 420
NlaIII	CATG	8 cut(s)	263, 316, 437, 452, 473, 667, 685, 737
NmeAIII	GCCGAG	1 cut(s)	124
NspI	RCATGY	2 cut(s)	263, 452
NspV	TTCGAA	1 cut(s)	277
PaeR7I	CTCGAG	1 cut(s)	41
PceI	AGGCCT	1 cut(s)	219
PciI	ACATGT	1 cut(s)	448
PctI	GAATGC	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	606
PfeI	GAWTC	5 cut(s)	173, 250, 360, 415, 497
PkrI	GCNGC	1 cut(s)	625
Ppu21I	YACGTR	1 cut(s)	445
PscI	ACATGT	1 cut(s)	448
PshBI	ATTAAT	1 cut(s)	371
PspPI	GGNCC	2 cut(s)	473, 660
RsaI	GTAC	1 cut(s)	447
RsaNI	GTAC	1 cut(s)	446
RseI	CAYNNNNRTG	3 cut(s)	129, 258, 447
SaqAI	TTAA	2 cut(s)	371, 564
SatI	GCNGC	1 cut(s)	624
Sau3AI	GATC	2 cut(s)	409, 420
Sau96I	GGNCC	2 cut(s)	473, 660
ScrFI	CCNGG	1 cut(s)	320
SduI	GDGCHC	3 cut(s)	143, 444, 558
SetI	ASST	8 cut(s)	117, 291, 297, 447, 507, 534, 616, 625
Sfr274I	CTCGAG	1 cut(s)	41
SfuI	TTCGAA	1 cut(s)	277
SinI	GGWCC	1 cut(s)	473
SlaI	CTCGAG	1 cut(s)	41
SmiMI	CAYNNNNRTG	3 cut(s)	129, 258, 447
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	8 cut(s)	160, 372, 487, 546, 573, 606, 693, 705
SseBI	AGGCCT	1 cut(s)	219
SsiI	CCGC	3 cut(s)	92, 338, 476
SspI	AATATT	1 cut(s)	568
SspMI	CTAG	3 cut(s)	165, 378, 620
StuI	AGGCCT	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	663
TaaI	ACNGT	2 cut(s)	20, 67
TaiI	ACGT	3 cut(s)	291, 297, 447
TaqI	TCGA	6 cut(s)	42, 57, 277, 344, 408, 610
TasI	AATT	8 cut(s)	160, 372, 487, 546, 573, 606, 693, 705
TfiI	GAWTC	5 cut(s)	173, 250, 360, 415, 497
Tru1I	TTAA	2 cut(s)	371, 564
Tru9I	TTAA	2 cut(s)	371, 564
TseI	GCWGC	1 cut(s)	623
TspDTI	ATGAA	4 cut(s)	197, 242, 443, 567
VneI	GTGCAC	2 cut(s)	139, 554
VpaK11BI	GGWCC	1 cut(s)	473
VspI	ATTAAT	1 cut(s)	371
XapI	RAATTY	2 cut(s)	487, 573
XceI	RCATGY	2 cut(s)	263, 452
XhoI	CTCGAG	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	606
XspI	CTAG	3 cut(s)	165, 378, 620
ZraI	GACGTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.