Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0018186

Physical Location & Seq

Genomic Coordinates Forward (+)

54173731 .. 54174428

Gene Structure 698 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAAAGTAATTGCTACTTCTTATTTCAAAAAGGCTCAGAACCAGATCAATGGACAGCAGAGGGGAACGTACATGTTCATACACATGTCACTCATGGTTCGCTTGATACGAATTCGGCTGAATCACAATTCACAACTTCTGCGGCACAGAGTGATTTCAATGGTTTTGGAGTTGGGAATTGTAGTGCACTCAGTTAATATTGGAATTTCATTGGGTGCTTCTGAAAGTGCTGAAACAATTCGACCTCTTCTGGTTGCTTTGACTTTCCATCAAGTTTTTGAAGGCATGGGCCATGGGACTTGGTGGTTGCATAGCTCAGTCAGTATCAGCATCTGGCTTAGCAGTGACATGGCAAGTCAGCGGCACCTTTCCCACAGTAATGCCCCAAATGTTACTTTTTCCATAGGAGCTCTTGTTACCCTGATGATAATAATCTTGTGGGGGGAATTGAGCTTGCGTTTTCTTCTATTTGCAGCAACTGAGAACGACGTCTTATATGAGTCGAGGGAACGAACCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

173

Amino Acids

19.54

Weight (kDa)

9.97

Isoelectric Point (pI)

32.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	41 - 102	2.6e-15	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018186)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0431401
rosa_laevigata	RLG00000006913
rosa_multiflora	Rmu_sc0017459.1_g000005
rosa_roxburghii	Rroxscaffold_5G00372850
rosa_rugosa	Rorug04G0250300
rosa_samantha	Rh4AG306200 Rh4AG306400 Rh4BG314300 Rh4BG314400 Rh4CG329900 Rh5AG135400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	492
AccB1I	GGYRCC	1 cut(s)	363
AciI	CCGC	2 cut(s)	142, 361
AcsI	RAATTY	2 cut(s)	111, 204
AcyI	GRCGYC	1 cut(s)	489
AdeI	CACNNNGTG	1 cut(s)	151
AfaI	GTAC	1 cut(s)	71
AflIII	ACRYGT	2 cut(s)	72, 84
AgsI	TTSAA	3 cut(s)	28, 159, 281
AluBI	AGCT	3 cut(s)	315, 410, 453
AluI	AGCT	3 cut(s)	315, 410, 453
Alw21I	GWGCWC	2 cut(s)	189, 412
Alw44I	GTGCAC	1 cut(s)	185
AlwNI	CAGNNNCTG	2 cut(s)	333, 479
AoxI	GGCC	1 cut(s)	289
ApaLI	GTGCAC	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	473
ApoI	RAATTY	2 cut(s)	111, 204
Asp700I	GAANNNNTTC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	289
BaeGI	GKGCMC	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	363
BanII	GRGCYC	1 cut(s)	412
Bbv12I	GWGCWC	2 cut(s)	189, 412
BbvI	GCAGC	1 cut(s)	485
BccI	CCATC	1 cut(s)	276
BisI	GCNGC	3 cut(s)	143, 362, 474
BlpI	GCTNAGC	1 cut(s)	338
BlsI	GCNGC	3 cut(s)	144, 363, 475
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	365
BmsI	GCATC	1 cut(s)	339
Bpu1102I	GCTNAGC	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	431
BsaHI	GRCGYC	1 cut(s)	489
BsaJI	CCNNGG	1 cut(s)	292
BsaXI	ACNNNNNCTCC	2 cut(s)	399, 429
Bse8I	GATNNNNATC	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	292
BseJI	GATNNNNATC	1 cut(s)	431
BseMII	CTCAG	4 cut(s)	50, 204, 330, 471
BseSI	GKGCMC	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	485
BshFI	GGCC	1 cut(s)	291
BshNI	GGYRCC	1 cut(s)	363
BsiHKAI	GWGCWC	2 cut(s)	189, 412
BslFI	GGGAC	1 cut(s)	310
BsmFI	GGGAC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	189, 412
Bsp143I	GATC	1 cut(s)	45
Bsp1720I	GCTNAGC	1 cut(s)	338
Bsp19I	CCATGG	1 cut(s)	292
BspACI	CCGC	2 cut(s)	142, 361
BspANI	GGCC	1 cut(s)	291
BspCNI	CTCAG	4 cut(s)	49, 203, 329, 472
BspLI	GGNNCC	1 cut(s)	365
BspT107I	GGYRCC	1 cut(s)	363
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	1 cut(s)	45
BssNI	GRCGYC	1 cut(s)	489
BssT1I	CCWWGG	1 cut(s)	292
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	1 cut(s)	252
BstACI	GRCGYC	1 cut(s)	489
BstC8I	GCNNGC	1 cut(s)	455
BstDEI	CTNAG	5 cut(s)	36, 190, 316, 338, 480
BstDSI	CCRYGG	1 cut(s)	292
BstKTI	GATC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	45
BstNSI	RCATGY	2 cut(s)	76, 88
BstSLI	GKGCMC	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	485
BstXI	CCANNNNNNTGG	1 cut(s)	50
BsuRI	GGCC	1 cut(s)	291
BtgI	CCRYGG	1 cut(s)	292
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	1 cut(s)	349
Cac8I	GCNNGC	1 cut(s)	455
CaiI	CAGNNNCTG	2 cut(s)	333, 479
Cfr13I	GGNCC	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	6 cut(s)	73, 85, 94, 286, 293, 349
CviJI	RGCY	7 cut(s)	35, 118, 291, 315, 337, 410, 453
CviKI_1	RGCY	7 cut(s)	35, 118, 291, 315, 337, 410, 453
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	5 cut(s)	36, 190, 316, 338, 480
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
DraIII	CACNNNGTG	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Ecl136II	GAGCTC	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	412
Eco53kI	GAGCTC	1 cut(s)	410
EcoICRI	GAGCTC	1 cut(s)	410
EcoRI	GAATTC	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	292
FaeI	CATG	6 cut(s)	76, 88, 97, 289, 296, 352
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	6 cut(s)	72, 84, 93, 285, 292, 348
Fnu4HI	GCNGC	3 cut(s)	143, 362, 474
FriOI	GRGCYC	1 cut(s)	412
Fsp4HI	GCNGC	3 cut(s)	143, 362, 474
GluI	GCNGC	3 cut(s)	143, 362, 474
HaeIII	GGCC	1 cut(s)	291
Hin1I	GRCGYC	1 cut(s)	489
Hin1II	CATG	6 cut(s)	76, 88, 97, 289, 296, 352
HinfI	GANTC	2 cut(s)	121, 500
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	39, 223
Hpy188III	TCNNGA	1 cut(s)	519
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	1 cut(s)	491
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	2 cut(s)	68, 489
HpyCH4V	TGCA	3 cut(s)	187, 310, 473
HpyF3I	CTNAG	5 cut(s)	36, 190, 316, 338, 480
HpySE526I	ACGT	2 cut(s)	68, 489
Hsp92I	GRCGYC	1 cut(s)	489
Hsp92II	CATG	6 cut(s)	76, 88, 97, 289, 296, 352
Kzo9I	GATC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	407
LpnPI	CCDG	4 cut(s)	56, 236, 319, 434
Lsp1109I	GCAGC	1 cut(s)	485
LweI	GCATC	1 cut(s)	339
MaeII	ACGT	2 cut(s)	68, 489
MaeIII	GTNAC	4 cut(s)	87, 344, 391, 415
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	2 cut(s)	239, 455
MhlI	GDGCHC	2 cut(s)	189, 412
MluCI	AATT	7 cut(s)	9, 111, 127, 177, 204, 237, 446
MlyI	GAGTC	1 cut(s)	509
MnlI	CCTC	3 cut(s)	54, 255, 498
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	2 cut(s)	83, 378
MspA1I	CMGCKG	1 cut(s)	361
NcoI	CCATGG	1 cut(s)	292
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	6 cut(s)	76, 88, 97, 289, 296, 352
NlaIV	GGNNCC	1 cut(s)	365
NmuCI	GTSAC	2 cut(s)	87, 344
NspI	RCATGY	2 cut(s)	76, 88
PciI	ACATGT	2 cut(s)	72, 84
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	3 cut(s)	144, 363, 475
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
PscI	ACATGT	2 cut(s)	72, 84
Psp124BI	GAGCTC	1 cut(s)	412
PspN4I	GGNNCC	1 cut(s)	365
PspPI	GGNCC	1 cut(s)	289
PstNI	CAGNNNCTG	2 cut(s)	333, 479
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	2 cut(s)	83, 378
SacI	GAGCTC	1 cut(s)	412
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	3 cut(s)	143, 362, 474
Sau3AI	GATC	1 cut(s)	45
Sau96I	GGNCC	1 cut(s)	289
SchI	GAGTC	1 cut(s)	509
SduI	GDGCHC	2 cut(s)	189, 412
SetI	ASST	8 cut(s)	71, 247, 317, 369, 412, 455, 492, 518
SfaNI	GCATC	1 cut(s)	339
SmiMI	CAYNNNNRTG	2 cut(s)	83, 378
Sse9I	AATT	7 cut(s)	9, 111, 127, 177, 204, 237, 446
SsiI	CCGC	2 cut(s)	142, 361
SspI	AATATT	1 cut(s)	199
SstI	GAGCTC	1 cut(s)	412
StyI	CCWWGG	1 cut(s)	292
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	2 cut(s)	71, 492
TaqI	TCGA	2 cut(s)	241, 503
TasI	AATT	7 cut(s)	9, 111, 127, 177, 204, 237, 446
TauI	GCSGC	2 cut(s)	145, 364
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	2 cut(s)	87, 344
TseI	GCWGC	1 cut(s)	473
Tsp45I	GTSAC	2 cut(s)	87, 344
TspDTI	ATGAA	3 cut(s)	17, 67, 198
TspRI	CASTG	1 cut(s)	349
VneI	GTGCAC	1 cut(s)	185
XapI	RAATTY	2 cut(s)	111, 204
XceI	RCATGY	2 cut(s)	76, 88
XmnI	GAANNNNTTC	1 cut(s)	237
ZraI	GACGTC	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.