Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0018186

Physical Location & Seq

Genomic Coordinates Forward (+)

48160122 .. 48166477

Gene Structure 6356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG314300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGACAGTGACATGGTTCTAGTTCTTGATGAAGGTAGGACTGTGGAGTATGATTCTCCTGCTCGGCTGATTAAGGAAAACTCTTCTGCATTTTCGAAGATTTTCAAACACTATCTCCAGAAAAAGAACTTCGATAACACTCCCTATATAACTGCACCGCTTTTCATCTCTACTCCCATCCTTCGCTTCCATACTCATGGCCGGTGCAATTGGCGTTTGTATCCCAATTCTAGGGATGATTCCGTCTTTGCAACCGGAGAAGAATATCTTCTTCATCATCAAGGCCTTTGCCTCTGGTGTCATATTGGCCACCAGATTTATCCACATGCTTCCGGACTCTTTCGACTACTTGACCTCACCGTGCCTGAAAGAAAACCCATAGGGGAAATTACCCTTCACCGCCATCGAAACTTTGATGGTGGATTCCATATATTAATTGCTACTTCTTATTTCAAAAAGGCTCAGAATCAGATCAATGGAGAGCATGAGGGGCACATACATGTTCATACACATGCCACTCATGGTTCGCTTGATACGAATTCGGCTGAATCACAACTTCTTGGGCACAGAGTGATTTCAAAGGTTTTGGAGTTGGGAATTGTGGTGCACTCAGTTAATATTGGAATTTCATTGGGTGCTTCTGAAGGTGCTGAAACAATTCGACCTCTTCTAGTTGCTTTGACTTTCCATCAAGTTTTTGAAGGCAGGGCCATGGGACTTGGTGGTTGCATAGCTCAGGCAATTTCTCCCCCAAAATTACTGACGAGGAAATGGAAGACAAAACTCTCACCCATCAAAGGTACTGAAAGCCGAGATCACTTCAATCCGAAGAGTTTGCCAATCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

282

Amino Acids

31.69

Weight (kDa)

8.84

Isoelectric Point (pI)

36.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	155 - 248	3.5e-16	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018186)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0431401
rosa_laevigata	RLG00000006913
rosa_multiflora	Rmu_sc0017459.1_g000005
rosa_roxburghii	Rroxscaffold_5G00372850
rosa_rugosa	Rorug04G0250300
rosa_samantha	Rh4AG306200 Rh4AG306400 Rh4BG314300 Rh4BG314400 Rh4CG329900 Rh5AG135400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	332
AciI	CCGC	2 cut(s)	158, 400
AcoI	YGGCCR	2 cut(s)	199, 307
AcsI	RAATTY	2 cut(s)	538, 624
AcuI	CTGAAG	1 cut(s)	663
AdeI	CACNNNGTG	1 cut(s)	571
AfaI	GTAC	1 cut(s)	802
AfiI	CCNNNNNNNGG	2 cut(s)	231, 797
AflIII	ACRYGT	1 cut(s)	499
AgsI	TTSAA	5 cut(s)	106, 454, 579, 701, 823
AluBI	AGCT	1 cut(s)	734
AluI	AGCT	1 cut(s)	734
Alw21I	GWGCWC	1 cut(s)	609
Alw44I	GTGCAC	1 cut(s)	605
Aor13HI	TCCGGA	1 cut(s)	332
AoxI	GGCC	4 cut(s)	199, 283, 307, 708
ApaLI	GTGCAC	1 cut(s)	605
ApoI	RAATTY	2 cut(s)	538, 624
AseI	ATTAAT	1 cut(s)	434
Asp700I	GAANNNNTTC	3 cut(s)	101, 267, 657
AspS9I	GGNCC	1 cut(s)	708
AsuHPI	GGTGA	3 cut(s)	349, 389, 780
AsuII	TTCGAA	1 cut(s)	95
BaeGI	GKGCMC	3 cut(s)	495, 567, 609
BalI	TGGCCA	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	782
Bbv12I	GWGCWC	1 cut(s)	609
BccI	CCATC	5 cut(s)	185, 410, 411, 696, 800
BcgI	CGANNNNNNTGC	1 cut(s)	817
BciVI	GTATCC	1 cut(s)	231
BfaI	CTAG	3 cut(s)	20, 231, 671
BfuI	GTATCC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	708
BpiI	GAAGAC	1 cut(s)	782
BpmI	CTGGAG	1 cut(s)	101
Bpu10I	CCTNAGC	1 cut(s)	735
Bpu14I	TTCGAA	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	711
BsaWI	WCCGGW	2 cut(s)	254, 332
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 797
Bse118I	RCCGGY	1 cut(s)	201
BseAI	TCCGGA	1 cut(s)	332
BseDI	CCNNGG	1 cut(s)	711
BseGI	GGATG	2 cut(s)	177, 241
BseLI	CCNNNNNNNGG	2 cut(s)	231, 797
BseMII	CTCAG	3 cut(s)	476, 624, 749
BseSI	GKGCMC	3 cut(s)	495, 567, 609
BsgI	GTGCAG	1 cut(s)	138
BshFI	GGCC	4 cut(s)	201, 285, 309, 710
BsiHKAI	GWGCWC	1 cut(s)	609
BsiSI	CCGG	3 cut(s)	202, 255, 333
BslFI	GGGAC	1 cut(s)	729
BslI	CCNNNNNNNGG	2 cut(s)	231, 797
BsmFI	GGGAC	1 cut(s)	729
BsnI	GGCC	4 cut(s)	201, 285, 309, 710
Bsp119I	TTCGAA	1 cut(s)	95
Bsp1286I	GDGCHC	3 cut(s)	495, 567, 609
Bsp13I	TCCGGA	1 cut(s)	332
Bsp143I	GATC	2 cut(s)	471, 814
Bsp19I	CCATGG	1 cut(s)	711
BspACI	CCGC	2 cut(s)	158, 400
BspANI	GGCC	4 cut(s)	201, 285, 309, 710
BspCNI	CTCAG	3 cut(s)	475, 623, 748
BspEI	TCCGGA	1 cut(s)	332
BspT104I	TTCGAA	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	201
BssAI	RCCGGY	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	711
BssMI	GATC	2 cut(s)	471, 814
BssT1I	CCWWGG	1 cut(s)	711
Bst4CI	ACNGT	3 cut(s)	8, 43, 361
Bst6I	CTCTTC	3 cut(s)	88, 672, 824
BstBI	TTCGAA	1 cut(s)	95
BstDEI	CTNAG	3 cut(s)	462, 610, 735
BstDSI	CCRYGG	1 cut(s)	711
BstF5I	GGATG	2 cut(s)	177, 241
BstKTI	GATC	2 cut(s)	474, 817
BstMBI	GATC	2 cut(s)	471, 814
BstMWI	GCNNNNNNNGC	1 cut(s)	490
BstNSI	RCATGY	3 cut(s)	329, 503, 515
BstSLI	GKGCMC	3 cut(s)	495, 567, 609
BstV2I	GAAGAC	1 cut(s)	782
BstXI	CCANNNNNNTGG	1 cut(s)	197
BsuI	GTATCC	1 cut(s)	231
BsuRI	GGCC	4 cut(s)	201, 285, 309, 710
BtgI	CCRYGG	1 cut(s)	711
BtsCI	GGATG	2 cut(s)	177, 241
BtsIMutI	CAGTG	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	708
Csp6I	GTAC	1 cut(s)	801
CviAII	CATG	8 cut(s)	13, 197, 326, 485, 500, 512, 521, 712
CviJI	RGCY	9 cut(s)	67, 201, 285, 309, 461, 545, 710, 734, 810
CviKI_1	RGCY	9 cut(s)	67, 201, 285, 309, 461, 545, 710, 734, 810
CviQI	GTAC	1 cut(s)	801
DdeI	CTNAG	3 cut(s)	462, 610, 735
DpnI	GATC	2 cut(s)	473, 816
DpnII	GATC	2 cut(s)	471, 814
DraIII	CACNNNGTG	1 cut(s)	571
EaeI	YGGCCR	2 cut(s)	199, 307
Eam1104I	CTCTTC	3 cut(s)	88, 672, 824
EarI	CTCTTC	3 cut(s)	88, 672, 824
Eco130I	CCWWGG	1 cut(s)	711
Eco147I	AGGCCT	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	663
EcoRI	GAATTC	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	711
ErhI	CCWWGG	1 cut(s)	711
FaeI	CATG	8 cut(s)	16, 200, 329, 488, 503, 515, 524, 715
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FaqI	GGGAC	1 cut(s)	729
FatI	CATG	8 cut(s)	12, 196, 325, 484, 499, 511, 520, 711
FokI	GGATG	2 cut(s)	164, 248
FspBI	CTAG	3 cut(s)	20, 231, 671
GsuI	CTGGAG	1 cut(s)	101
HaeIII	GGCC	4 cut(s)	201, 285, 309, 710
HapII	CCGG	3 cut(s)	202, 255, 333
Hin1II	CATG	8 cut(s)	16, 200, 329, 488, 503, 515, 524, 715
HinfI	GANTC	6 cut(s)	53, 239, 336, 423, 466, 548
HpaII	CCGG	3 cut(s)	202, 255, 333
HphI	GGTGA	3 cut(s)	349, 389, 780
Hpy166II	GTNNAC	1 cut(s)	607
Hpy188I	TCNGA	4 cut(s)	465, 471, 643, 828
Hpy188III	TCNNGA	3 cut(s)	26, 118, 333
Hpy8I	GTNNAC	1 cut(s)	607
HpyAV	CCTTC	5 cut(s)	26, 191, 404, 638, 695
HpyCH4III	ACNGT	3 cut(s)	8, 43, 361
HpyCH4V	TGCA	6 cut(s)	89, 155, 207, 251, 607, 729
HpyF10VI	GCNNNNNNNGC	1 cut(s)	490
HpyF3I	CTNAG	3 cut(s)	462, 610, 735
Hsp92II	CATG	8 cut(s)	16, 200, 329, 488, 503, 515, 524, 715
Kpn2I	TCCGGA	1 cut(s)	332
Kzo9I	GATC	2 cut(s)	471, 814
MaeI	CTAG	3 cut(s)	20, 231, 671
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	2 cut(s)	473, 816
MboI	GATC	2 cut(s)	471, 814
MboII	GAAGA	8 cut(s)	75, 109, 260, 263, 272, 659, 787, 841
MfeI	CAATTG	1 cut(s)	208
MhlI	GDGCHC	3 cut(s)	495, 567, 609
MlsI	TGGCCA	1 cut(s)	309
MluNI	TGGCCA	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	330
MnlI	CCTC	5 cut(s)	302, 365, 481, 675, 759
Mox20I	TGGCCA	1 cut(s)	309
MroI	TCCGGA	1 cut(s)	332
MroXI	GAANNNNTTC	3 cut(s)	101, 267, 657
MscI	TGGCCA	1 cut(s)	309
MseI	TTAA	3 cut(s)	72, 434, 615
MslI	CAYNNNNRTG	3 cut(s)	195, 498, 510
Msp20I	TGGCCA	1 cut(s)	309
MspI	CCGG	3 cut(s)	202, 255, 333
MunI	CAATTG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	490
NcoI	CCATGG	1 cut(s)	711
NdeII	GATC	2 cut(s)	471, 814
NlaIII	CATG	8 cut(s)	16, 200, 329, 488, 503, 515, 524, 715
NmeAIII	GCCGAG	2 cut(s)	43, 836
NmuCI	GTSAC	1 cut(s)	8
NspI	RCATGY	3 cut(s)	329, 503, 515
NspV	TTCGAA	1 cut(s)	95
PceI	AGGCCT	1 cut(s)	285
PciI	ACATGT	1 cut(s)	499
PcsI	WCGNNNNNNNCGW	1 cut(s)	533
PdmI	GAANNNNTTC	3 cut(s)	101, 267, 657
PfeI	GAWTC	5 cut(s)	53, 239, 423, 466, 548
PleI	GAGTC	1 cut(s)	330
PpsI	GAGTC	1 cut(s)	330
PscI	ACATGT	1 cut(s)	499
PshBI	ATTAAT	1 cut(s)	434
PspPI	GGNCC	1 cut(s)	708
RsaI	GTAC	1 cut(s)	802
RsaNI	GTAC	1 cut(s)	801
RseI	CAYNNNNRTG	3 cut(s)	195, 498, 510
SaqAI	TTAA	3 cut(s)	72, 434, 615
Sau3AI	GATC	2 cut(s)	471, 814
Sau96I	GGNCC	1 cut(s)	708
SchI	GAGTC	1 cut(s)	330
SduI	GDGCHC	3 cut(s)	495, 567, 609
SetI	ASST	7 cut(s)	37, 357, 585, 649, 667, 736, 802
SfuI	TTCGAA	1 cut(s)	95
SmiMI	CAYNNNNRTG	3 cut(s)	195, 498, 510
SseBI	AGGCCT	1 cut(s)	285
SsiI	CCGC	2 cut(s)	158, 400
SspI	AATATT	1 cut(s)	619
SspMI	CTAG	3 cut(s)	20, 231, 671
StuI	AGGCCT	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	711
TaaI	ACNGT	3 cut(s)	8, 43, 361
TaqI	TCGA	5 cut(s)	95, 132, 343, 406, 661
TfiI	GAWTC	5 cut(s)	53, 239, 423, 466, 548
Tru1I	TTAA	3 cut(s)	72, 434, 615
Tru9I	TTAA	3 cut(s)	72, 434, 615
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	5 cut(s)	45, 154, 263, 494, 618
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	1 cut(s)	13
VneI	GTGCAC	1 cut(s)	605
VspI	ATTAAT	1 cut(s)	434
XapI	RAATTY	2 cut(s)	538, 624
XceI	RCATGY	3 cut(s)	329, 503, 515
XmnI	GAANNNNTTC	3 cut(s)	101, 267, 657
XspI	CTAG	3 cut(s)	20, 231, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.