Rh4CG329900

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0018186
Physical Location & Seq
Forward (+)
59063314 .. 59071640
8327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG329900.1

Sequence Viewer

Length: 780 bp
ATGGACATTAGGATTTTCAAACACTATCTCCAGAAAAAGAACTTCGATAACACTCCCTATATAACTGCACCGCTTTTCATCTCTACTCCCATCCTTCGCTTCCATACTCATGGCCGGTGCAATTGGCGTTTGTATCCCAATTCTAGGGATGATTCCGTCTTTGCAACCGGAGAAGAATATCTTCTTCATCATCAAGGCCTTTGCCTCTGGTGTCATATTGGCCACCAGATTTATCCACATGCTTCCGGACTCTTTCGACTACTTGACCTCACCGTGCCTGAAAGAAAACCCATAGGGGAAATTACCCTTCACCGCCATCGAAACTTTGATGGTGGATTCCATATATTAATTGCTACTTCTTATTTCAAAAAGGCTCAGAATCAGATCAATGGAGAGCATGAGGGGCACATACATGTTCATACACATGCCACTCATGGTTCGCTTGATACGAATTCGGCTGAATCACAACTTCTTGGGCACAGAGTGATTTCAAAGGTTTTGGAGTTGGGAATTGTGGTGCACTCAGTTAATATTGGAATTTCATTGGGTGCTTCTGAAGGTGCTGAAACAATTCGACCTCTTCTAGTTGCTTTGACTTTCCATCAAGTTTTTGAAGGCAGGGCCATGGGACTTGGTGGTTGCATAGCTCAGGCAATTTCTCCCCCAAAATTACTGACGTGGGATGACTCGCTAGGTATGGCAGCTCACTTGTTTCTAAGAGGAAAAGTTAAGAGATGGAGCTTACATGAAGAAGACTGGTGTGCAGAAGATGAAAACTAA

Protein Analysis

259

Amino Acids

29.29

Weight (kDa)

6.89

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 126 - 219 3.9e-16 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018186)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0431401
rosa_laevigata RLG00000006913
rosa_multiflora Rmu_sc0017459.1_g000005
rosa_roxburghii Rroxscaffold_5G00372850
rosa_rugosa Rorug04G0250300
rosa_samantha Rh4AG306200 Rh4AG306400 Rh4BG314300 Rh4BG314400 Rh4CG329900 Rh5AG135400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 245
AciI CCGC 2 cut(s) 71, 313
AcoI YGGCCR 2 cut(s) 112, 220
AcsI RAATTY 2 cut(s) 451, 537
AcuI CTGAAG 1 cut(s) 576
AdeI CACNNNGTG 1 cut(s) 484
AfiI CCNNNNNNNGG 1 cut(s) 144
AflIII ACRYGT 1 cut(s) 412
AgsI TTSAA 4 cut(s) 19, 367, 492, 614
AjiI CACGTC 1 cut(s) 678
AluBI AGCT 3 cut(s) 647, 704, 741
AluI AGCT 3 cut(s) 647, 704, 741
Alw21I GWGCWC 1 cut(s) 522
Alw44I GTGCAC 1 cut(s) 518
Aor13HI TCCGGA 1 cut(s) 245
AoxI GGCC 4 cut(s) 112, 196, 220, 621
ApaLI GTGCAC 1 cut(s) 518
ApeKI GCWGC 1 cut(s) 701
ApoI RAATTY 2 cut(s) 451, 537
AseI ATTAAT 1 cut(s) 347
Asp700I GAANNNNTTC 2 cut(s) 180, 570
AspS9I GGNCC 1 cut(s) 621
AsuHPI GGTGA 2 cut(s) 262, 302
BaeGI GKGCMC 3 cut(s) 408, 480, 522
BalI TGGCCA 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 759
Bbv12I GWGCWC 1 cut(s) 522
BbvI GCAGC 1 cut(s) 713
BccI CCATC 5 cut(s) 98, 323, 324, 609, 729
BciVI GTATCC 1 cut(s) 144
BfaI CTAG 3 cut(s) 144, 584, 692
BfuI GTATCC 1 cut(s) 144
BisI GCNGC 1 cut(s) 702
BlsI GCNGC 1 cut(s) 703
BmgBI CACGTC 1 cut(s) 678
BmgT120I GGNCC 1 cut(s) 621
BpiI GAAGAC 1 cut(s) 759
BpmI CTGGAG 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 648
BsaJI CCNNGG 1 cut(s) 624
BsaWI WCCGGW 2 cut(s) 167, 245
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse118I RCCGGY 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 761
BseAI TCCGGA 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 624
BseGI GGATG 3 cut(s) 90, 154, 688
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMII CTCAG 3 cut(s) 389, 537, 662
BseNI ACTGG 1 cut(s) 761
BseSI GKGCMC 3 cut(s) 408, 480, 522
BseXI GCAGC 1 cut(s) 713
BsgI GTGCAG 1 cut(s) 51
BshFI GGCC 4 cut(s) 114, 198, 222, 623
BsiHKAI GWGCWC 1 cut(s) 522
BsiSI CCGG 3 cut(s) 115, 168, 246
BslFI GGGAC 1 cut(s) 642
BslI CCNNNNNNNGG 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 642
BsnI GGCC 4 cut(s) 114, 198, 222, 623
Bsp1286I GDGCHC 3 cut(s) 408, 480, 522
Bsp13I TCCGGA 1 cut(s) 245
Bsp143I GATC 1 cut(s) 384
Bsp19I CCATGG 1 cut(s) 624
BspACI CCGC 2 cut(s) 71, 313
BspANI GGCC 4 cut(s) 114, 198, 222, 623
BspCNI CTCAG 3 cut(s) 388, 536, 661
BspEI TCCGGA 1 cut(s) 245
BsrFI RCCGGY 1 cut(s) 114
BsrI ACTGG 1 cut(s) 761
BssAI RCCGGY 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 624
BssMI GATC 1 cut(s) 384
BssT1I CCWWGG 1 cut(s) 624
Bst4CI ACNGT 1 cut(s) 274
Bst6I CTCTTC 1 cut(s) 585
BstDEI CTNAG 4 cut(s) 375, 523, 648, 716
BstDSI CCRYGG 1 cut(s) 624
BstF5I GGATG 3 cut(s) 90, 154, 688
BstKTI GATC 1 cut(s) 387
BstMBI GATC 1 cut(s) 384
BstMWI GCNNNNNNNGC 1 cut(s) 403
BstNSI RCATGY 3 cut(s) 242, 416, 428
BstSLI GKGCMC 3 cut(s) 408, 480, 522
BstV1I GCAGC 1 cut(s) 713
BstV2I GAAGAC 1 cut(s) 759
BstXI CCANNNNNNTGG 1 cut(s) 110
BsuI GTATCC 1 cut(s) 144
BsuRI GGCC 4 cut(s) 114, 198, 222, 623
BtgI CCRYGG 1 cut(s) 624
BtrI CACGTC 1 cut(s) 678
BtsCI GGATG 3 cut(s) 90, 154, 688
Cfr10I RCCGGY 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 621
CviAII CATG 8 cut(s) 110, 239, 398, 413, 425, 434, 625, 746
CviJI RGCY 9 cut(s) 114, 198, 222, 374, 458, 623, 647, 704, 741
CviKI_1 RGCY 9 cut(s) 114, 198, 222, 374, 458, 623, 647, 704, 741
DdeI CTNAG 4 cut(s) 375, 523, 648, 716
DpnI GATC 1 cut(s) 386
DpnII GATC 1 cut(s) 384
DraIII CACNNNGTG 1 cut(s) 484
EaeI YGGCCR 2 cut(s) 112, 220
Eam1104I CTCTTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 585
Eco130I CCWWGG 1 cut(s) 624
Eco147I AGGCCT 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 576
EcoRI GAATTC 1 cut(s) 451
EcoT14I CCWWGG 1 cut(s) 624
ErhI CCWWGG 1 cut(s) 624
FaeI CATG 8 cut(s) 113, 242, 401, 416, 428, 437, 628, 749
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FaqI GGGAC 1 cut(s) 642
FatI CATG 8 cut(s) 109, 238, 397, 412, 424, 433, 624, 745
Fnu4HI GCNGC 1 cut(s) 702
FokI GGATG 3 cut(s) 77, 161, 695
Fsp4HI GCNGC 1 cut(s) 702
FspBI CTAG 3 cut(s) 144, 584, 692
GluI GCNGC 1 cut(s) 702
GsuI CTGGAG 1 cut(s) 14
HaeIII GGCC 4 cut(s) 114, 198, 222, 623
HapII CCGG 3 cut(s) 115, 168, 246
Hin1II CATG 8 cut(s) 113, 242, 401, 416, 428, 437, 628, 749
HinfI GANTC 6 cut(s) 152, 249, 336, 379, 461, 686
HpaII CCGG 3 cut(s) 115, 168, 246
HphI GGTGA 2 cut(s) 262, 302
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 3 cut(s) 378, 384, 556
Hpy188III TCNNGA 2 cut(s) 31, 246
Hpy8I GTNNAC 1 cut(s) 520
HpyAV CCTTC 4 cut(s) 104, 317, 551, 608
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 677
HpyCH4V TGCA 6 cut(s) 68, 120, 164, 520, 642, 764
HpyF10VI GCNNNNNNNGC 1 cut(s) 403
HpyF3I CTNAG 4 cut(s) 375, 523, 648, 716
HpySE526I ACGT 1 cut(s) 677
Hsp92II CATG 8 cut(s) 113, 242, 401, 416, 428, 437, 628, 749
Kpn2I TCCGGA 1 cut(s) 245
Kzo9I GATC 1 cut(s) 384
LmnI GCTCC 1 cut(s) 738
Lsp1109I GCAGC 1 cut(s) 713
MaeI CTAG 3 cut(s) 144, 584, 692
MaeII ACGT 1 cut(s) 677
MalI GATC 1 cut(s) 386
MboI GATC 1 cut(s) 384
MboII GAAGA 7 cut(s) 173, 176, 185, 572, 761, 764, 779
MfeI CAATTG 1 cut(s) 121
MhlI GDGCHC 3 cut(s) 408, 480, 522
MlsI TGGCCA 1 cut(s) 222
MluNI TGGCCA 1 cut(s) 222
MlyI GAGTC 2 cut(s) 243, 680
MnlI CCTC 5 cut(s) 215, 278, 394, 588, 713
Mox20I TGGCCA 1 cut(s) 222
MroI TCCGGA 1 cut(s) 245
MroXI GAANNNNTTC 2 cut(s) 180, 570
MscI TGGCCA 1 cut(s) 222
MseI TTAA 3 cut(s) 347, 528, 729
MslI CAYNNNNRTG 3 cut(s) 108, 411, 423
Msp20I TGGCCA 1 cut(s) 222
MspI CCGG 3 cut(s) 115, 168, 246
MunI CAATTG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 403
NcoI CCATGG 1 cut(s) 624
NdeII GATC 1 cut(s) 384
NlaIII CATG 8 cut(s) 113, 242, 401, 416, 428, 437, 628, 749
NspI RCATGY 3 cut(s) 242, 416, 428
PceI AGGCCT 1 cut(s) 198
PciI ACATGT 1 cut(s) 412
PcsI WCGNNNNNNNCGW 1 cut(s) 446
PdmI GAANNNNTTC 2 cut(s) 180, 570
PfeI GAWTC 4 cut(s) 152, 336, 379, 461
PkrI GCNGC 1 cut(s) 703
PleI GAGTC 2 cut(s) 243, 680
PpsI GAGTC 2 cut(s) 243, 680
PscI ACATGT 1 cut(s) 412
PshBI ATTAAT 1 cut(s) 347
PspPI GGNCC 1 cut(s) 621
RseI CAYNNNNRTG 3 cut(s) 108, 411, 423
SaqAI TTAA 3 cut(s) 347, 528, 729
SatI GCNGC 1 cut(s) 702
Sau3AI GATC 1 cut(s) 384
Sau96I GGNCC 1 cut(s) 621
SchI GAGTC 2 cut(s) 243, 680
SduI GDGCHC 3 cut(s) 408, 480, 522
SetI ASST 9 cut(s) 270, 498, 562, 580, 649, 680, 697, 706, 743
SmiMI CAYNNNNRTG 3 cut(s) 108, 411, 423
SseBI AGGCCT 1 cut(s) 198
SsiI CCGC 2 cut(s) 71, 313
SspI AATATT 1 cut(s) 532
SspMI CTAG 3 cut(s) 144, 584, 692
StuI AGGCCT 1 cut(s) 198
StyI CCWWGG 1 cut(s) 624
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 1 cut(s) 680
TaqI TCGA 4 cut(s) 45, 256, 319, 574
TfiI GAWTC 4 cut(s) 152, 336, 379, 461
Tru1I TTAA 3 cut(s) 347, 528, 729
Tru9I TTAA 3 cut(s) 347, 528, 729
TseI GCWGC 1 cut(s) 701
TspDTI ATGAA 5 cut(s) 67, 176, 407, 531, 762
TspGWI ACGGA 1 cut(s) 145
VneI GTGCAC 1 cut(s) 518
VspI ATTAAT 1 cut(s) 347
XapI RAATTY 2 cut(s) 451, 537
XceI RCATGY 3 cut(s) 242, 416, 428
XmnI GAANNNNTTC 2 cut(s) 180, 570
XspI CTAG 3 cut(s) 144, 584, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.