Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013117

Physical Location & Seq

Genomic Coordinates Reverse (-)

61711248 .. 61712963

Gene Structure 1716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGGCAAGGACGCCAAGGCCGGAGGAAAAGGCAAGGGAAAAGCCGCAGCCGGCGACGAGGGCGGCGGCTCTAAGGGAAAAGGAAAGTCCGGCAAGGGCGGAGCTTCCGATGGGCTCGGCACCTGCACGTATGTGAAGGCAAGGCACATACTTTGTGAGAAGCAGGGCAAGATCAACGAAGCCTACAAGAAGTTGCAGGACGGCTGGCTCGGAAACGGCGATAAGGTCCCTCCGGCGGAGTTCGCTAAGTTGGCCGCCGAGTACTCCGAGTGTCCTTCAGGGAAGAAAGGCGGCGATCTCGGGTGGTTCCCTCGCGGGAAGATGGCTGGCCCTTTTCAAGAGGTGGCCTTCAGCACTCCGATTGGGGCTACCAGCGGTGCTTTCAAGTCCACGCATGGTTACCACATTATCTTGTGTGAAGGCAGAAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003681 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005759 GO:0005819 GO:0005856 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015630 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rotamase Rotamase_3

Protein Analysis

144

Amino Acids

14.76

Weight (kDa)

9.5

Isoelectric Point (pI)

33.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase_3	PF13616	44 - 138	6.2e-17	PPIC-type PPIASE domain
Rotamase	PF00639	76 - 140	5.4e-17	PPIC-type PPIASE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26550
fragaria_vesca	FvH4_4g30970 FvH4_4g30970 FvH4_4g30970 FvH4_4g30970
malus_domestica	MD00G1081600.v1.1
prunus_persica	Prupe.1G278400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0439331
rosa_laevigata	RLG00000006280
rosa_multiflora	Rmu_ssc0000171.1_g000011
rosa_roxburghii	Rroxscaffold_3G00219760 Rroxscaffold_5G00380270
rosa_rugosa	Rorug04G0317600
rosa_samantha	Rh4AG368300 Rh4BG380300 Rh4CG394700 Rh4DG374600
rosa_wichuraiana	Rw0G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	131
AccB1I	GGYRCC	1 cut(s)	119
AccII	CGCG	1 cut(s)	315
AciI	CCGC	9 cut(s)	45, 63, 66, 99, 236, 255, 291, 315, 375
AcoI	YGGCCR	1 cut(s)	252
AcuI	CTGAAG	2 cut(s)	261, 334
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	2 cut(s)	338, 385
AleI	CACNNNNGTG	1 cut(s)	131
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	4 cut(s)	18, 252, 328, 345
ApeKI	GCWGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	226, 329
AvaI	CYCGRG	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	2 cut(s)	104, 316
BceAI	ACGGC	2 cut(s)	217, 232
BfuAI	ACCTGC	1 cut(s)	131
BisI	GCNGC	6 cut(s)	45, 48, 64, 67, 255, 292
BlsI	GCNGC	6 cut(s)	46, 49, 65, 68, 256, 293
BmcAI	AGTACT	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	226
BmeT110I	CYCGRG	1 cut(s)	299
BmgT120I	GGNCC	2 cut(s)	226, 329
BmiI	GGNNCC	3 cut(s)	121, 228, 308
BsaAI	YACGTR	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse118I	RCCGGY	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	59
BsgI	GTGCAG	1 cut(s)	109
Bsh1236I	CGCG	1 cut(s)	315
BshFI	GGCC	4 cut(s)	20, 254, 330, 347
BshNI	GGYRCC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	4 cut(s)	21, 51, 90, 233
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	4 cut(s)	20, 254, 330, 347
BsoBI	CYCGRG	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	171, 295
BspACI	CCGC	9 cut(s)	45, 63, 66, 99, 236, 255, 291, 315, 375
BspANI	GGCC	4 cut(s)	20, 254, 330, 347
BspFNI	CGCG	1 cut(s)	315
BspLI	GGNNCC	3 cut(s)	121, 228, 308
BspMI	ACCTGC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	2 cut(s)	171, 295
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	15
BstACI	GRCGYC	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	129
BstC8I	GCNNGC	3 cut(s)	52, 206, 328
BstDEI	CTNAG	2 cut(s)	72, 246
BstEII	GGTNACC	1 cut(s)	398
BstFNI	CGCG	1 cut(s)	315
BstKTI	GATC	2 cut(s)	174, 298
BstMBI	GATC	2 cut(s)	171, 295
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 242, 251
BstPI	GGTNACC	1 cut(s)	398
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	59
BsuRI	GGCC	4 cut(s)	20, 254, 330, 347
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	3 cut(s)	52, 206, 328
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	2 cut(s)	226, 329
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	1 cut(s)	395
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	2 cut(s)	72, 246
DpnI	GATC	2 cut(s)	173, 297
DpnII	GATC	2 cut(s)	171, 295
EaeI	YGGCCR	1 cut(s)	252
EciI	GGCGGA	2 cut(s)	114, 251
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	226
Eco57I	CTGAAG	2 cut(s)	261, 334
Eco88I	CYCGRG	1 cut(s)	299
Eco91I	GGTNACC	1 cut(s)	398
EcoO109I	RGGNCCY	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	398
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	1 cut(s)	398
FaiI	YATR	3 cut(s)	132, 149, 396
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	1 cut(s)	394
FauI	CCCGC	1 cut(s)	308
Fnu4HI	GCNGC	6 cut(s)	45, 48, 64, 67, 255, 292
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	6 cut(s)	45, 48, 64, 67, 255, 292
GluI	GCNGC	6 cut(s)	45, 48, 64, 67, 255, 292
HaeIII	GGCC	4 cut(s)	20, 254, 330, 347
HapII	CCGG	4 cut(s)	21, 51, 90, 233
HgaI	GACGC	1 cut(s)	20
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	398
HpaII	CCGG	4 cut(s)	21, 51, 90, 233
Hpy166II	GTNNAC	1 cut(s)	390
Hpy188I	TCNGA	4 cut(s)	109, 212, 268, 360
Hpy188III	TCNNGA	1 cut(s)	338
Hpy8I	GTNNAC	1 cut(s)	390
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	4 cut(s)	130, 285, 358, 413
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	2 cut(s)	126, 196
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 242, 251
HpyF3I	CTNAG	2 cut(s)	72, 246
HpySE526I	ACGT	1 cut(s)	128
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	398
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	171, 295
LmnI	GCTCC	1 cut(s)	101
Lsp1109I	GCAGC	1 cut(s)	59
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	2 cut(s)	173, 297
MboI	GATC	2 cut(s)	171, 295
MboII	GAAGA	2 cut(s)	295, 331
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	1 cut(s)	430
MnlI	CCTC	5 cut(s)	17, 52, 240, 321, 334
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	1 cut(s)	433
MslI	CAYNNNNRTG	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	375
MspI	CCGG	4 cut(s)	21, 51, 90, 233
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	3 cut(s)	60, 242, 251
NaeI	GCCGGC	1 cut(s)	52
NdeII	GATC	2 cut(s)	171, 295
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	3 cut(s)	121, 228, 308
NmeAIII	GCCGAG	2 cut(s)	96, 283
OliI	CACNNNNGTG	1 cut(s)	131
PaqCI	CACCTGC	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdiI	GCCGGC	1 cut(s)	52
PkrI	GCNGC	6 cut(s)	46, 49, 65, 68, 256, 293
Ppu21I	YACGTR	1 cut(s)	129
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
PspEI	GGTNACC	1 cut(s)	398
PspN4I	GGNNCC	3 cut(s)	121, 228, 308
PspPI	GGNCC	2 cut(s)	226, 329
PspPPI	RGGWCCY	1 cut(s)	226
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	433
SatI	GCNGC	6 cut(s)	45, 48, 64, 67, 255, 292
Sau3AI	GATC	2 cut(s)	171, 295
Sau96I	GGNCC	2 cut(s)	226, 329
ScaI	AGTACT	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	5 cut(s)	106, 125, 131, 228, 345
SinI	GGWCC	1 cut(s)	226
SmiMI	CAYNNNNRTG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	430
SsiI	CCGC	9 cut(s)	45, 63, 66, 99, 236, 255, 291, 315, 375
StyI	CCWWGG	1 cut(s)	15
TaiI	ACGT	1 cut(s)	131
TasI	AATT	1 cut(s)	430
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	5 cut(s)	47, 66, 69, 257, 294
Tru1I	TTAA	1 cut(s)	433
Tru9I	TTAA	1 cut(s)	433
TseI	GCWGC	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	226
ZrmI	AGTACT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.