Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007476

Physical Location & Seq

Genomic Coordinates Reverse (-)

294400 .. 295950

Gene Structure 1551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGCGAACAGCTCAAGCTCAGCCTCCCATGGTGGAAACCGTAACGGAGTTCCCAACTGGGAGACACCATCAAGAGTTGAGGTCAACCGTAAATCACAAGAGTTCCTACTTTGGTATAGGACCTCTCGTGAGGTCTACTCCACCCCCAGCGATAAATTTCATAAGATGGTCAAGGTCAGTGAGATGTCTCGAGAGCAAGTATTGGAGGCAATTGAAAAGTATCAGAAAAATATTAAGAACGACGGGCCAAACACAGTCGTTGATCAATCGGCCTCAAACACACGGATCGCCGGTGAGAAGGGGGCCAAACGTCGTATTCTAGAAGACGGTGACAAAGTTTGCCACCCAAGAGAAAAAACAAGGAAAAGATTGCGACGTGCTCTCGAGCTCCTTCACTCGTTCTGCAAAGAGAAGGTGTACCGCACACTACGCTCATTCTTTTACATGGATGTCGCGCTTTTCAAGGACCAGTCTAAGACGAATAAAGCTATCAATCAAGTCTGTATTGAACTCCGTTGCACCCGTTCTAGTCTAAACGTCTTTGCAACAGACCGAGGAACCGTCATAGGTGCCCTTTCTTTCAAATTGGAGGGAAGACTAGTCAATTGTAATATTGAAGCGGGTGATGATATTACGTGCAAACTGGGGCAGATTATCCCGCCATTCATGAATCTAGTGACTGAGATGGAGGTTGGAGGTGATGTCTGGTTTATCTTATTTGTGGAAAAATATTCAGTTTTTCTAGAATTGACATTAGAAAACTTCCACAATAAGTACCATTGTATCATCATTACCGGAACAGGCCAGGCCGATGTTGTATCCAGACAACTCACAAAAAAACTAATGGATGATTTCAAGCTACCAGCGTTCTGCCTTGTAGACTGTGATCCATCGGGCATTGAGATTTCAGCAGTTGTCAAGCACGGGTCAGTGAATATGGCGTATGACAGTAAAAATTTAGCCAGTCCCTTGATGTATTGGTTAGGTATTTGGCCAAGCGATTTGGTAAAACTTAATATACCTTCAGAGGAGTTACTCAAGAAAGATTTGAAGAAAATAGGCGAATTGATAATGGAAGAATTTGTGAATGACGATGTGACGCTGAAAAGTGAGCTGGATCGTATGGTGGAGCACCAAAGGAAGGCATCCCTTGAAAATTTGAGTGCTCTGGGGACTCATTGCCTATATAGAAATTATTTGCCGTATAAACTGTACAAGACGATGAACCAGATTATGCAAGGTAATACTGGAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

418

Amino Acids

47.65

Weight (kDa)

8.74

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TP6A_N	PF04406	124 - 180	3.2e-13	Type IIB DNA topoisomerase
TOP6A-Spo11_Toprim	PF21180	237 - 404	4e-48	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007476)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02062 FvH4_7g23893
rosa_chinensis	RchiOBHm_Chr3g0447681 RchiOBHm_Chr5g0062071
rosa_laevigata	RLG00000015854 RLG00000025979 RLG00000035529
rosa_multiflora	Rmu_sc0002296.1_g000012 Rmu_sc0006064.1_g000010 Rmu_sc0017669.1_g000013
rosa_roxburghii	Rroxscaffold_2G00153710
rosa_rugosa	Rorug01G0475300 Rorug05G0345800
rosa_samantha	Rh2BG027000 Rh2BG028800 Rh3AG004200 Rh3BG003800 Rh3CG004200 Rh3DG004100 Rh5AG407400 Rh5BG420600 Rh5BG420700 Rh5CG444600 Rh5CG444800 Rh5DG435800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	569
AccI	GTMKAC	2 cut(s)	135, 879
AccII	CGCG	1 cut(s)	455
AciI	CCGC	3 cut(s)	421, 620, 659
AclWI	GGATC	3 cut(s)	293, 881, 1125
AcoI	YGGCCR	1 cut(s)	992
AcsI	RAATTY	4 cut(s)	155, 955, 1079, 1156
AcuI	CTGAAG	1 cut(s)	1008
AfaI	GTAC	3 cut(s)	419, 776, 1214
AfiI	CCNNNNNNNGG	1 cut(s)	1141
AgsI	TTSAA	8 cut(s)	215, 463, 509, 583, 617, 856, 1051, 1154
AhlI	ACTAGT	1 cut(s)	598
AjiI	CACGTC	1 cut(s)	377
AjnI	CCWGG	1 cut(s)	804
AluBI	AGCT	6 cut(s)	12, 18, 388, 488, 859, 1114
AluI	AGCT	6 cut(s)	12, 18, 388, 488, 859, 1114
Alw21I	GWGCWC	4 cut(s)	382, 390, 1134, 1168
Alw26I	GTCTC	2 cut(s)	56, 192
AlwI	GGATC	3 cut(s)	293, 881, 1125
Ama87I	CYCGRG	2 cut(s)	189, 383
AoxI	GGCC	6 cut(s)	245, 270, 303, 802, 807, 992
ApoI	RAATTY	4 cut(s)	155, 955, 1079, 1156
AspLEI	GCGC	1 cut(s)	457
AspS9I	GGNCC	4 cut(s)	120, 245, 303, 466
AsuHPI	GGTGA	4 cut(s)	305, 341, 635, 710
AvaI	CYCGRG	2 cut(s)	189, 383
AvaII	GGWCC	2 cut(s)	120, 466
BaeGI	GKGCMC	1 cut(s)	574
BaeI	ACNNNNGTAYC	2 cut(s)	766, 799
BalI	TGGCCA	1 cut(s)	994
BanI	GGYRCC	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	390
BauI	CACGAG	1 cut(s)	126
BbsI	GAAGAC	2 cut(s)	330, 601
Bbv12I	GWGCWC	4 cut(s)	382, 390, 1134, 1168
BccI	CCATC	4 cut(s)	76, 160, 679, 898
BceAI	ACGGC	1 cut(s)	1186
BciT130I	CCWGG	1 cut(s)	806
BciVI	GTATCC	1 cut(s)	829
BclI	TGATCA	1 cut(s)	262
BcoDI	GTCTC	2 cut(s)	56, 192
BcuI	ACTAGT	1 cut(s)	598
BfaI	CTAG	5 cut(s)	320, 528, 599, 674, 743
BfuI	GTATCC	1 cut(s)	829
BlpI	GCTNAGC	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	806
Bme18I	GGWCC	2 cut(s)	120, 466
BmeT110I	CYCGRG	2 cut(s)	189, 383
BmgBI	CACGTC	1 cut(s)	377
BmgT120I	GGNCC	4 cut(s)	120, 245, 303, 466
BmiI	GGNNCC	4 cut(s)	304, 559, 571, 1252
BmrFI	CCNGG	1 cut(s)	806
BmrI	ACTGGG	2 cut(s)	67, 653
BmsI	GCATC	1 cut(s)	1154
BmuI	ACTGGG	2 cut(s)	67, 653
BpiI	GAAGAC	2 cut(s)	330, 601
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
Bpu1102I	GCTNAGC	1 cut(s)	19
BpuEI	CTTGAG	1 cut(s)	1022
BsaAI	YACGTR	1 cut(s)	636
BsaJI	CCNNGG	2 cut(s)	28, 553
BsaWI	WCCGGW	1 cut(s)	794
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bsc4I	CCNNNNNNNGG	1 cut(s)	1141
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	5 cut(s)	62, 469, 648, 963, 1252
Bse3DI	GCAATG	1 cut(s)	1177
BseBI	CCWGG	1 cut(s)	806
BseDI	CCNNGG	2 cut(s)	28, 553
BseGI	GGATG	3 cut(s)	454, 853, 1145
BseLI	CCNNNNNNNGG	1 cut(s)	1141
BseMI	GCAATG	1 cut(s)	1177
BseMII	CTCAG	2 cut(s)	33, 672
BseNI	ACTGG	5 cut(s)	62, 469, 648, 963, 1252
BseRI	GAGGAG	1 cut(s)	1043
BseSI	GKGCMC	1 cut(s)	574
BseYI	CCCAGC	1 cut(s)	146
Bsh1236I	CGCG	1 cut(s)	455
BshFI	GGCC	6 cut(s)	247, 272, 305, 804, 809, 994
BshNI	GGYRCC	1 cut(s)	569
BsiHKAI	GWGCWC	4 cut(s)	382, 390, 1134, 1168
BsiHKCI	CYCGRG	2 cut(s)	189, 383
BsiSI	CCGG	2 cut(s)	291, 795
BslFI	GGGAC	2 cut(s)	951, 1186
BslI	CCNNNNNNNGG	1 cut(s)	1141
BsmAI	GTCTC	2 cut(s)	56, 192
BsmFI	GGGAC	2 cut(s)	951, 1186
BsnI	GGCC	6 cut(s)	247, 272, 305, 804, 809, 994
BsoBI	CYCGRG	2 cut(s)	189, 383
Bsp1286I	GDGCHC	5 cut(s)	382, 390, 574, 1134, 1168
Bsp1407I	TGTACA	1 cut(s)	1212
Bsp143I	GATC	4 cut(s)	262, 285, 886, 1117
Bsp1720I	GCTNAGC	1 cut(s)	19
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	3 cut(s)	421, 620, 659
BspANI	GGCC	6 cut(s)	247, 272, 305, 804, 809, 994
BspCNI	CTCAG	2 cut(s)	32, 673
BspFNI	CGCG	1 cut(s)	455
BspHI	TCATGA	1 cut(s)	666
BspLI	GGNNCC	4 cut(s)	304, 559, 571, 1252
BspPI	GGATC	3 cut(s)	293, 881, 1125
BspT107I	GGYRCC	1 cut(s)	569
BsrDI	GCAATG	1 cut(s)	1177
BsrFI	RCCGGY	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	1212
BsrI	ACTGG	5 cut(s)	62, 469, 648, 963, 1252
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	2 cut(s)	28, 553
BssMI	GATC	4 cut(s)	262, 285, 886, 1117
BssSI	CACGAG	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	28
Bst2BI	CACGAG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	806
Bst4CI	ACNGT	8 cut(s)	41, 89, 256, 329, 562, 884, 950, 1212
BstAUI	TGTACA	1 cut(s)	1212
BstBAI	YACGTR	1 cut(s)	636
BstDEI	CTNAG	3 cut(s)	19, 474, 681
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	3 cut(s)	454, 853, 1145
BstFNI	CGCG	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	4 cut(s)	265, 288, 889, 1120
BstMAI	GTCTC	2 cut(s)	56, 192
BstMBI	GATC	4 cut(s)	262, 285, 886, 1117
BstMWI	GCNNNNNNNGC	1 cut(s)	429
BstNI	CCWGG	1 cut(s)	806
BstSCI	CCNGG	1 cut(s)	804
BstSLI	GKGCMC	1 cut(s)	574
BstUI	CGCG	1 cut(s)	455
BstV2I	GAAGAC	2 cut(s)	330, 601
BsuI	GTATCC	1 cut(s)	829
BsuRI	GGCC	6 cut(s)	247, 272, 305, 804, 809, 994
BtgI	CCRYGG	1 cut(s)	28
BtrI	CACGTC	1 cut(s)	377
BtsCI	GGATG	3 cut(s)	454, 853, 1145
BtsIMutI	CAGTG	2 cut(s)	184, 936
CciI	TCATGA	1 cut(s)	666
CfoI	GCGC	1 cut(s)	457
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	4 cut(s)	120, 245, 303, 466
CseI	GACGC	1 cut(s)	1108
Csp6I	GTAC	3 cut(s)	418, 775, 1213
CviAII	CATG	3 cut(s)	29, 445, 667
CviQI	GTAC	3 cut(s)	418, 775, 1213
DdeI	CTNAG	3 cut(s)	19, 474, 681
DpnI	GATC	4 cut(s)	264, 287, 888, 1119
DpnII	GATC	4 cut(s)	262, 285, 886, 1117
EaeI	YGGCCR	1 cut(s)	992
Ecl136II	GAGCTC	1 cut(s)	388
Eco130I	CCWWGG	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	390
Eco47I	GGWCC	2 cut(s)	120, 466
Eco53kI	GAGCTC	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	1008
Eco88I	CYCGRG	2 cut(s)	189, 383
EcoICRI	GAGCTC	1 cut(s)	388
EcoO109I	RGGNCCY	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	804
EcoT14I	CCWWGG	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	3 cut(s)	32, 448, 670
FaqI	GGGAC	2 cut(s)	951, 1186
FatI	CATG	3 cut(s)	28, 444, 666
FauI	CCCGC	2 cut(s)	613, 666
FbaI	TGATCA	1 cut(s)	262
FblI	GTMKAC	2 cut(s)	135, 879
FokI	GGATG	3 cut(s)	461, 860, 1132
FriOI	GRGCYC	1 cut(s)	390
FspBI	CTAG	5 cut(s)	320, 528, 599, 674, 743
GlaI	GCGC	1 cut(s)	456
GsaI	CCCAGC	1 cut(s)	150
HaeIII	GGCC	6 cut(s)	247, 272, 305, 804, 809, 994
HapII	CCGG	2 cut(s)	291, 795
HgaI	GACGC	1 cut(s)	1108
HhaI	GCGC	1 cut(s)	457
Hin1II	CATG	3 cut(s)	32, 448, 670
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	670, 1174
HpaII	CCGG	2 cut(s)	291, 795
HphI	GGTGA	4 cut(s)	305, 341, 635, 710
Hpy166II	GTNNAC	4 cut(s)	85, 136, 418, 880
Hpy188I	TCNGA	2 cut(s)	225, 1027
Hpy8I	GTNNAC	4 cut(s)	85, 136, 418, 880
Hpy99I	CGWCG	3 cut(s)	245, 315, 378
HpyAV	CCTTC	5 cut(s)	292, 401, 406, 1032, 1135
HpyCH4III	ACNGT	8 cut(s)	41, 89, 256, 329, 562, 884, 950, 1212
HpyCH4IV	ACGT	4 cut(s)	310, 376, 537, 635
HpyCH4V	TGCA	5 cut(s)	405, 519, 545, 639, 1237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	429
HpyF3I	CTNAG	3 cut(s)	19, 474, 681
HpySE526I	ACGT	4 cut(s)	310, 376, 537, 635
Hsp92II	CATG	3 cut(s)	32, 448, 670
HspAI	GCGC	1 cut(s)	455
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	4 cut(s)	262, 285, 886, 1117
LmnI	GCTCC	3 cut(s)	393, 1129, 1250
LweI	GCATC	1 cut(s)	1154
MaeI	CTAG	5 cut(s)	320, 528, 599, 674, 743
MaeII	ACGT	4 cut(s)	310, 376, 537, 635
MaeIII	GTNAC	5 cut(s)	41, 329, 676, 1032, 1096
MalI	GATC	4 cut(s)	264, 287, 888, 1119
MboI	GATC	4 cut(s)	262, 285, 886, 1117
MboII	GAAGA	4 cut(s)	335, 606, 1063, 1088
MfeI	CAATTG	2 cut(s)	210, 604
MhlI	GDGCHC	5 cut(s)	382, 390, 574, 1134, 1168
MlsI	TGGCCA	1 cut(s)	994
MluNI	TGGCCA	1 cut(s)	994
MlyI	GAGTC	1 cut(s)	1168
MmeI	TCCRAC	1 cut(s)	673
Mox20I	TGGCCA	1 cut(s)	994
MscI	TGGCCA	1 cut(s)	994
MseI	TTAA	2 cut(s)	234, 1014
Msp20I	TGGCCA	1 cut(s)	994
MspI	CCGG	2 cut(s)	291, 795
MspR9I	CCNGG	1 cut(s)	806
MunI	CAATTG	2 cut(s)	210, 604
MvaI	CCWGG	1 cut(s)	806
MvnI	CGCG	1 cut(s)	455
MwoI	GCNNNNNNNGC	1 cut(s)	429
NcoI	CCATGG	1 cut(s)	28
NdeII	GATC	4 cut(s)	262, 285, 886, 1117
NlaIII	CATG	3 cut(s)	32, 448, 670
NlaIV	GGNNCC	4 cut(s)	304, 559, 571, 1252
NmuCI	GTSAC	3 cut(s)	329, 676, 1096
PaeR7I	CTCGAG	2 cut(s)	189, 383
PagI	TCATGA	1 cut(s)	666
PfeI	GAWTC	1 cut(s)	670
PleI	GAGTC	1 cut(s)	1168
PpsI	GAGTC	1 cut(s)	1168
Ppu21I	YACGTR	1 cut(s)	636
PpuMI	RGGWCCY	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	390
Psp5II	RGGWCCY	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	804
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	804
PspN4I	GGNNCC	4 cut(s)	304, 559, 571, 1252
PspPI	GGNCC	4 cut(s)	120, 245, 303, 466
PspPPI	RGGWCCY	1 cut(s)	120
RsaI	GTAC	3 cut(s)	419, 776, 1214
RsaNI	GTAC	3 cut(s)	418, 775, 1213
SacI	GAGCTC	1 cut(s)	390
SaqAI	TTAA	2 cut(s)	234, 1014
Sau3AI	GATC	4 cut(s)	262, 285, 886, 1117
Sau96I	GGNCC	4 cut(s)	120, 245, 303, 466
SchI	GAGTC	1 cut(s)	1168
ScrFI	CCNGG	1 cut(s)	806
SduI	GDGCHC	5 cut(s)	382, 390, 574, 1134, 1168
SfaNI	GCATC	1 cut(s)	1154
Sfr274I	CTCGAG	2 cut(s)	189, 383
SgrAI	CRCCGGYG	1 cut(s)	290
SinI	GGWCC	2 cut(s)	120, 466
SlaI	CTCGAG	2 cut(s)	189, 383
SmlI	CTYRAG	4 cut(s)	13, 189, 383, 1037
SmoI	CTYRAG	4 cut(s)	13, 189, 383, 1037
SpeI	ACTAGT	1 cut(s)	598
SsiI	CCGC	3 cut(s)	421, 620, 659
SspI	AATATT	3 cut(s)	232, 613, 731
SspMI	CTAG	5 cut(s)	320, 528, 599, 674, 743
SstI	GAGCTC	1 cut(s)	390
StyD4I	CCNGG	1 cut(s)	804
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	8 cut(s)	41, 89, 256, 329, 562, 884, 950, 1212
TaiI	ACGT	4 cut(s)	313, 379, 540, 638
TaqI	TCGA	2 cut(s)	190, 384
TaqII	GACCGA	1 cut(s)	567
TatI	WGTACW	1 cut(s)	1212
TfiI	GAWTC	1 cut(s)	670
Tru1I	TTAA	2 cut(s)	234, 1014
Tru9I	TTAA	2 cut(s)	234, 1014
TscAI	CASTG	2 cut(s)	184, 936
TseFI	GTSAC	3 cut(s)	329, 676, 1096
Tsp45I	GTSAC	3 cut(s)	329, 676, 1096
TspDTI	ATGAA	4 cut(s)	149, 655, 683, 1238
TspGWI	ACGGA	3 cut(s)	60, 298, 503
TspRI	CASTG	2 cut(s)	184, 936
VpaK11BI	GGWCC	2 cut(s)	120, 466
XapI	RAATTY	4 cut(s)	155, 955, 1079, 1156
XbaI	TCTAGA	2 cut(s)	319, 742
XhoI	CTCGAG	2 cut(s)	189, 383
XmiI	GTMKAC	2 cut(s)	135, 879
XspI	CTAG	5 cut(s)	320, 528, 599, 674, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.