RchiOBHm_Chr3g0449401

Transcriptional regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0010370
Physical Location & Seq
Reverse (-)
1194814 .. 1207664
12851 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 4323 bp
ATGACGTGGTGGAAGATGTGGAGAGTGGTGGTTCTAGTGGAACCTTTATCTGATAAAGACATTGAGGAGCTGATTGCTGAATTTTTGGAGGTTGAGAGTAAGGCTGCAGAGGCTCAGGAAGCGCTTGAAAAGGAGTCTCTTGCCAAAGTGGAGACTGAAGTTAGAGAGGAGCTGGCACAAACTCTTCACGGGAATGATTTGGAAACAGCTGTTGCAGATGAAATGGCTACTTTAATAGAAGACTGGAAAGCTGAGCTCGATGAGCTTGAGACTGAGAGTGCTCATTTGTTGGAACAACTTGATGGGGCAGGCATTGAGCTACCAAGCCTTTATAAGTGGATTGAAAGTCAGGCTCCTAATGGTTGCTGCACCGAAGCTTGGAAAACACGAATACACTGGGTAGGAAGTCAGGTGAGTGGAGAATTTACCGAGTCAAGAGCTGATGCTGAGAAGTATCTTCAAACGCACAGACCTGTAAGAAGGAAACATGGTAAACTATTGGAGGATGGTGCTAGTGGATTCCTGCAGAAAAAACTAGCTGAAGAGGGGAGCAAGGATGTTGCAACAACTGAGGTTGATTGGTGTTCTCTCAACAAATTATTTTCTGACGGTGCAACTAAGGATAGCGCTTCATTTGGAAGCAAGCACTGGGCTTCTGTTTACTTGGCTAGCACACCGCACCAAGCTGCAGAGATGGGACTTGAATTCCCTGGAGTCAATGAGGTGGAGGAGATTGATGACATTGATGGCAATTCTAGTGATCCATTTGTTGCAGCTGCTGTTGCAAATGAAAGAGAACTGAATCTCTCAGAAGAACAGAAAAGAAGTTATAGGAAGGTTAAGGAAGAAGATGACGCAAACATTGATAGGAAGCTTCAAGTTCATTTGAAACGGAGGAGACATCAAAGGAGATGTAAACAGGATGTCAGTCAGAAAGAAGTTTCCCCAATTGATCAAGTGATACAAAGCAACATGGGCCAGTCTTTCTCAATGCTTGACTCTTCTACTGGTATCTCAAATGGGAAAATTGATGAAGATGGTGAAAACATTTGTAACACAGATAATGAGGTTGAAGGCCAAAATTTGAAGTCTGCCATAATGAGTAACGGTGCTCCGCCGGCCCCTGATTCCACTGAAGCCAGAGGGTCCAAGCGTCCGAATGAGAGCGAGGAACTAAACATTGACATTAAGAGGAATCGAACTATAATTATAGATAGTGATGATGAAGCTTCAATGAAAGATACTTTTGACTGCAACATGATAAAATCTGAGGATCATTCCTATGTGAAAGAGAATATCTGCAGATCTGGAGATGATGGTCTCACATCACATAGTCTGAATAAGATGCTCCGTTGCACAGCTTGTAATAAATTTTCTGCTGAAGTGCGCTCACATCCACTTATGGAAGTGATTATTTGTGCAAATTGCAAGTGCTTGTTGGAAGAAATGATCCATTTCAAGGATTCTGATTGCTCCATGTGTTATTGTGGGTGGTGTGGGCAAAGCAATGATTTATTGAGTTGTAAATCTTGCACGATGTTATTTTGTACAACTTGTATAAAGAGGAATATTGGAGAGGAATGCTTATCCAAGGCCCAGACCGATGGCTGGCAGTGTTGTTCCTGTTGCCCAAGTCTCATACAGACATTGAAGTTACAATTTGAGGAAGCAATGGGATCTGGAGATTTGATAGTTTCTAGCTCTGATAGTGATTCAGATGATTCAGATGCAGATGTGGATGTTGCTATCAGTTCTAAGAGGAAGAGAAAGAAGAAGATACGAAGGATAATTGATGATACCGAATTGGGAGAAGAGACCAAAAGAAAAATTGCGATTGAAAAGGAACGTCAAGAGCGTTTGAAGTCCTTGCAAGTACAATTTTCTGTCAAATCTAAACTGAAGTGCTCTGCTAGCTATAATGGGAATATATCTGAAGGTGTTAGTGCTGAAGTCATGGGTGATGCATCAGCTGGTTATATAGTGAATGTTATGAGAGAGAAAGGTGAAGAACCTGTGAGAATTCCTCCAAGCCTTTCATCAAAATTGAAGGCTCATCAGATTACGGGCGTAAGGTTTATGTGGGAGAACATCGTACAATCTATCAGAGAAGTGAAGTCTGGGGATAAAGGGCTTGGTTGTATTCTAGCTCACATGATGGGCCTTGGTAAAACGCTTCAGGTTATTACTTTTCTGTATACTGCAATGAGAAGTATCGATTTGGGATTAAAAACTGCACTTATTGTCACTCCTGTTAATGTGCTGCATAATTGGCGGCAAGAGTTCTTGAAGTGGAGACCTTCAGAAGTAAAGCCTCTTCGGATCTTCATGCTAGAAGATGTGTCAAGGGAGAGGAGACTAGAGTTGCTTGCAAAATGGAGAGCTAAGGGTGGTGTTTTCTTGATTGGCTACTCCGCTTTCAGAAACTTATCCCTTGGAAAGCATGTGAAGGATCGGAACATGGCTAGAGAAATTTGTCATGCCTTACAGGATGGACCTGATATACTTGTTTGTGATGAGGCCCATATTATTAAGAATACCAAGGCCGATGTAACCCAGGCCTTGAAACAAGTTAGATGCCAAAGAAGAATAGCATTAACTGGATCACCTCTTCAGAACAATCTCATGGAATATTATTGTATGGTTGATTTTGTAAGGGAAGGTTTTCTTGGAAGTAGCCACGACTTCCAGAATCCCATAGAGAATGGTCAGCATACTAATTCAACTGTGGAAGATGTGAAAATCATGAATCAGAGATCGCATATTCTGTATGAACAGTTGAAAGGATTTGTTCAAAGAATGGACATGAGCGTGGTGAAGAAGGACTTACCACCTAAAACTGTCTTTGTGATAACTGTGAGGCTTTCTCCCATACAGAAGAAATTATACAAGAGATTCCTTGATGTGCACGGATTCACTACTGACAAGATTTATAATGAAAAGATGAAAAGAGGTTTTTTCGCTGGCTACCAGGCCTTAGCTCAGATATGGAACCATCCAGGGATATTGCAATTGAGAAAAGATGACAAAGACTATGTGAGGCATGAAGATGGTGTTGAGAATTTTCTTGCTGATGACAGCTCTAGTGATGAAAACACTGACTATATAGGAGAGAAGCAAGGGAATGTCAATGAAATTTTGCCAGGAAAAAAAGATGATGGTTACTTTCAGAAGGATTGGTGGAATGATCTCATCCATGAAAATAATTATAAGGAGCTTGATTATAGTGGCAAAATGGTATTGCTGCTTGAAATTCTATCTATGTGTTCTGATGTGGGTGATAAGGCATTGGTATTTAGTCAGAGCATACCAACTCTTGATCTGATAGAACTTTACCTTGCAAGATTACCTCGACATGGGAAGAGATGGAAGTTTTGGAAGAAAGGAAAAGATTGGTTTAGGCTAGATGGTAGAACAGAGAGCTCAGAAAGGCAAAAACTGGTTGAGCGCTTTAATGATCCTGCAAATAAGAGGGTGAAATGCACTCTAATTTCCACCAAAGCTGGATCTTTGGGGATAAATCTTCATGCTGCTAACCGTGTAATTATAGTTGATGGGTCTTGGAATCCAACCTATGATCTTCAGGCTATCTATCGTTCTTGGAGGTATGGCCAAACAAAGCCGGTGTTTGCTTACAGATTGATGGCACATGGAACTATGGAAGAAAAAATTTATAAGCGTCAGGTAACAAAGGAGGGCCTGGCTGCAAGGGTAGTGGATAGACAACAGGTACATAGGACAATATCTAAAGAAGAGATGTTACATCTTTTTGAGTTTGGTGACGATGAAAACCATGATGGGCCTGAGCAAGATAACAGAGCTAATCAAAGTATCACTGGTTCAGTCGAAAATTTGCCTAAGCACGGACCACATCTTTCTCATGGAAGTTGCGCTTCTGACAAATTAATGGAAAGATTAATTGGCAAGCATTATCCGAGCTGGATTGCTAATTTTCACTTACATGAGACACTATTGCAAGAGAATGAAGAGGAAAAGCTATCAAAAGAAGAGCAAGACATGGCTTGGGAAGTATACCGGAAATCATTTGAATGGGAGGAAGTGAAGCAAGTTCCTGTCAGTGAATCTGCAGTTGACCAAAAGCCAGAGCCAGCTGCATCAACTGTGAACTCGCCTGCAATAGAGATGAGCAGCCTTGCAGAATCCAAGGTGAGGGATACTTATGTGCAGCGGAAATGCACTAAGCTTTCACATGTGCTGACCCTTAGAAGTCAAGGTACAAAATCTGGTTGCACCACTGTGTGTGGGGAATGTGCTCGAGAGATTAGCTGGGAGGGTTTGCATCAAGAAGGCAAGTCTGCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000775 GO:0000785 GO:0000792 GO:0000902 GO:0000904 GO:0001674 GO:0001932 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005700 GO:0005701 GO:0005721 GO:0005722 GO:0006139 GO:0006259 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006915 GO:0006928 GO:0006935 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008152 GO:0008219 GO:0008347 GO:0009555 GO:0009605 GO:0009653 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009987 GO:0010369 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0012501 GO:0016043 GO:0016458 GO:0016462 GO:0016477 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019220 GO:0019222 GO:0022008 GO:0022607 GO:0023051 GO:0023052 GO:0030030 GO:0030154 GO:0030182 GO:0031175 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031497 GO:0032268 GO:0032501 GO:0032502 GO:0032872 GO:0032989 GO:0032990 GO:0033043 GO:0033044 GO:0034401 GO:0034622 GO:0034641 GO:0034724 GO:0034728 GO:0035556 GO:0040011 GO:0040029 GO:0042063 GO:0042221 GO:0042325 GO:0042330 GO:0042393 GO:0042585 GO:0043007 GO:0043073 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043408 GO:0043570 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046328 GO:0046483 GO:0048229 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048870 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051246 GO:0051252 GO:0051253 GO:0051276 GO:0051674 GO:0051716 GO:0060255 GO:0061564 GO:0065003 GO:0065004 GO:0065007 GO:0070302 GO:0070828 GO:0070868 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097190 GO:0097193 GO:0097485 GO:0097549 GO:0098687 GO:0120036 GO:0120039 GO:1900049 GO:1901360 GO:1902275 GO:1902531 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

1440

Amino Acids

163.28

Weight (kDa)

5.81

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 685 - 1000 6.4e-51 SNF2-related domain
ResIII PF04851 691 - 869 1.6e-06 Type III restriction enzyme, res subunit
Helicase_C PF00271 1077 - 1203 2e-18 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08600 AT1G08600 AT1G08600 AT1G08600
fragaria_vesca FvH4_6g01581
malus_domestica MD00G1149200.v1.1 MD04G1232200.v1.1
prunus_persica Prupe.6G351600_v2.0.a1 Prupe.6G351600_v2.0.a1
pyrus_communis pycom04g20560 pycom12g22990
rosa_chinensis RchiOBHm_Chr3g0449401
rosa_laevigata RLG00000025834
rosa_multiflora Rmu_ssc0000423.1_g000001
rosa_roxburghii Rroxscaffold_6G00427360
rosa_rugosa Rorug02G0620400
rosa_samantha Rh3AG018100 Rh3BG018400 Rh3CG017300 Rh3DG018800
rosa_wichuraiana Rw3G001450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 333, 2931, 3207, 3672
AccI GTMKAC 2 cut(s) 2195, 4029
AciI CCGC 5 cut(s) 677, 1115, 2272, 2412, 4186
AclWI GGATC 9 cut(s) 755, 1281, 1444, 1684, 2327, 2457, 2608, 3449, 3511
AcoI YGGCCR 1 cut(s) 3607
AdeI CACNNNGTG 1 cut(s) 4257
AfaI GTAC 5 cut(s) 1549, 1875, 2094, 3729, 4234
AfeI AGCGCT 3 cut(s) 123, 628, 3446
AfiI CCNNNNNNNGG 6 cut(s) 378, 1459, 1608, 3353, 3860, 4167
AflIII ACRYGT 1 cut(s) 4207
AjiI CACGTC 1 cut(s) 6
AjnI CCWGG 6 cut(s) 709, 2553, 2967, 2995, 3139, 3696
AjuI GAANNNNNNNTTGG 4 cut(s) 2649, 2681, 3900, 3932
AleI CACNNNNGTG 1 cut(s) 4253
Alw21I GWGCWC 7 cut(s) 258, 283, 1114, 1907, 2907, 3422, 4273
Alw44I GTGCAC 1 cut(s) 2903
AlwI GGATC 9 cut(s) 755, 1281, 1444, 1684, 2327, 2457, 2608, 3449, 3511
AlwNI CAGNNNCTG 1 cut(s) 779
Ama87I CYCGRG 1 cut(s) 4272
Aor51HI AGCGCT 3 cut(s) 123, 628, 3446
ApaLI GTGCAC 1 cut(s) 2903
AseI ATTAAT 2 cut(s) 3902, 3914
Asp700I GAANNNNTTC 1 cut(s) 2661
AspLEI GCGC 5 cut(s) 124, 629, 1389, 3447, 3890
AsuNHI GCTAGC 2 cut(s) 668, 1910
AvaI CYCGRG 1 cut(s) 4272
AvaII GGWCC 3 cut(s) 1146, 2492, 3863
BaeGI GKGCMC 1 cut(s) 2907
BaeI ACNNNNGTAYC 2 cut(s) 4164, 4197
BalI TGGCCA 1 cut(s) 3609
BanII GRGCYC 2 cut(s) 258, 3422
BarI GAAGNNNNNNTAC 8 cut(s) 2298, 2330, 2867, 2899, 3741, 3773, 4216, 4248
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 7 cut(s) 258, 283, 1114, 1907, 2907, 3422, 4273
BciT130I CCWGG 6 cut(s) 711, 2555, 2969, 2997, 3141, 3698
BciVI GTATCC 1 cut(s) 4165
BclI TGATCA 1 cut(s) 952
BfmI CTRYAG 5 cut(s) 105, 524, 687, 1300, 4083
BfoI RGCGCY 3 cut(s) 125, 630, 3448
BfuI GTATCC 1 cut(s) 4165
BglII AGATCT 1 cut(s) 1304
BlpI GCTNAGC 1 cut(s) 252
Bme1390I CCNGG 6 cut(s) 711, 2555, 2969, 2997, 3141, 3698
Bme18I GGWCC 3 cut(s) 1146, 2492, 3863
BmeT110I CYCGRG 1 cut(s) 4272
BmgBI CACGTC 1 cut(s) 6
BmiI GGNNCC 5 cut(s) 42, 354, 1122, 1147, 2990
BmrFI CCNGG 6 cut(s) 711, 2555, 2969, 2997, 3141, 3698
BmrI ACTGGG 2 cut(s) 406, 658
BmsI GCATC 8 cut(s) 433, 1335, 1717, 1951, 1973, 2564, 4121, 4306
BmtI GCTAGC 2 cut(s) 672, 1914
BmuI ACTGGG 2 cut(s) 406, 658
BpiI GAAGAC 1 cut(s) 246
BplI GAGNNNNNCTC 4 cut(s) 2008, 2040, 2848, 2880
BpmI CTGGAG 3 cut(s) 732, 1329, 1701
Bpu10I CCTNAGC 5 cut(s) 114, 2382, 2974, 3801, 3855
Bpu1102I GCTNAGC 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 287
Bsa29I ATCGAT 1 cut(s) 2214
BsaI GGTCTC 3 cut(s) 1325, 1808, 2287
BsaJI CCNNGG 8 cut(s) 709, 1590, 2161, 2431, 2538, 2553, 2996, 4161
BsaWI WCCGGW 1 cut(s) 4032
Bsc4I CCNNNNNNNGG 6 cut(s) 378, 1459, 1608, 3353, 3860, 4167
Bse118I RCCGGY 2 cut(s) 1117, 3619
Bse1I ACTGG 8 cut(s) 248, 401, 653, 979, 1012, 2602, 3441, 3838
Bse3DI GCAATG 3 cut(s) 1513, 1677, 2208
BseBI CCWGG 6 cut(s) 711, 2555, 2969, 2997, 3141, 3698
BseCI ATCGAT 1 cut(s) 2214
BseDI CCNNGG 8 cut(s) 709, 1590, 2161, 2431, 2538, 2553, 2996, 4161
BseGI GGATG 8 cut(s) 511, 562, 928, 1393, 1744, 2494, 2992, 3189
BseLI CCNNNNNNNGG 6 cut(s) 378, 1459, 1608, 3353, 3860, 4167
BseMI GCAATG 3 cut(s) 1513, 1677, 2208
BseNI ACTGG 8 cut(s) 248, 401, 653, 979, 1012, 2602, 3441, 3838
BseRI GAGGAG 5 cut(s) 80, 182, 743, 910, 2365
BseSI GKGCMC 1 cut(s) 2907
BseYI CCCAGC 1 cut(s) 4284
BsgI GTGCAG 3 cut(s) 352, 2217, 4202
BshVI ATCGAT 1 cut(s) 2214
BsiHKAI GWGCWC 7 cut(s) 258, 283, 1114, 1907, 2907, 3422, 4273
BsiHKCI CYCGRG 1 cut(s) 4272
BsiSI CCGG 3 cut(s) 1118, 3620, 4033
BslFI GGGAC 1 cut(s) 711
BslI CCNNNNNNNGG 6 cut(s) 378, 1459, 1608, 3353, 3860, 4167
BsmFI GGGAC 1 cut(s) 711
BsmI GAATGC 1 cut(s) 1586
Bso31I GGTCTC 3 cut(s) 1325, 1808, 2287
BsoBI CYCGRG 1 cut(s) 4272
Bsp1286I GDGCHC 7 cut(s) 258, 283, 1114, 1907, 2907, 3422, 4273
Bsp1407I TGTACA 1 cut(s) 1547
Bsp1720I GCTNAGC 1 cut(s) 252
BspACI CCGC 5 cut(s) 677, 1115, 2272, 2412, 4186
BspDI ATCGAT 1 cut(s) 2214
BspHI TCATGA 1 cut(s) 2742
BspLI GGNNCC 5 cut(s) 42, 354, 1122, 1147, 2990
BspMAI CTGCAG 5 cut(s) 109, 528, 691, 1304, 4087
BspOI GCTAGC 2 cut(s) 672, 1914
BspPI GGATC 9 cut(s) 755, 1281, 1444, 1684, 2327, 2457, 2608, 3449, 3511
BspQI GCTCTTC 1 cut(s) 3999
BspTNI GGTCTC 3 cut(s) 1325, 1808, 2287
BsrDI GCAATG 3 cut(s) 1513, 1677, 2208
BsrFI RCCGGY 2 cut(s) 1117, 3619
BsrGI TGTACA 1 cut(s) 1547
BsrI ACTGG 8 cut(s) 248, 401, 653, 979, 1012, 2602, 3441, 3838
BssAI RCCGGY 2 cut(s) 1117, 3619
BssECI CCNNGG 8 cut(s) 709, 1590, 2161, 2431, 2538, 2553, 2996, 4161
BssNAI GTATAC 2 cut(s) 2196, 4030
BssT1I CCWWGG 5 cut(s) 1590, 2161, 2431, 2538, 4161
Bst1107I GTATAC 2 cut(s) 2196, 4030
Bst2UI CCWGG 6 cut(s) 711, 2555, 2969, 2997, 3141, 3698
Bst4CI ACNGT 9 cut(s) 611, 1109, 2725, 2775, 2839, 2854, 3536, 4120, 4255
BstAUI TGTACA 1 cut(s) 1547
BstF5I GGATG 8 cut(s) 511, 562, 928, 1393, 1744, 2494, 2992, 3189
BstH2I RGCGCY 3 cut(s) 125, 630, 3448
BstHHI GCGC 5 cut(s) 124, 629, 1389, 3447, 3890
BstMWI GCNNNNNNNGC 8 cut(s) 110, 119, 262, 782, 975, 1118, 1911, 2269
BstNI CCWGG 6 cut(s) 711, 2555, 2969, 2997, 3141, 3698
BstNSI RCATGY 2 cut(s) 2444, 4211
BstSCI CCNGG 6 cut(s) 709, 2553, 2967, 2995, 3139, 3696
BstSFI CTRYAG 5 cut(s) 105, 524, 687, 1300, 4083
BstSLI GKGCMC 1 cut(s) 2907
BstV2I GAAGAC 1 cut(s) 246
BstX2I RGATCY 4 cut(s) 1304, 1676, 2319, 3503
BstXI CCANNNNNNTGG 1 cut(s) 1604
BstYI RGATCY 4 cut(s) 1304, 1676, 2319, 3503
BstZ17I GTATAC 2 cut(s) 2196, 4030
Bsu15I ATCGAT 1 cut(s) 2214
BsuI GTATCC 1 cut(s) 4165
BsuTUI ATCGAT 1 cut(s) 2214
BtrI CACGTC 1 cut(s) 6
BtsCI GGATG 8 cut(s) 511, 562, 928, 1393, 1744, 2494, 2992, 3189
BtsI GCAGTG 1 cut(s) 1619
BtsIMutI CAGTG 8 cut(s) 394, 646, 1131, 1619, 3093, 3831, 4081, 4251
CaiI CAGNNNCTG 1 cut(s) 779
CciI TCATGA 1 cut(s) 2742
CfoI GCGC 5 cut(s) 124, 629, 1389, 3447, 3890
Cfr10I RCCGGY 2 cut(s) 1117, 3619
ClaI ATCGAT 1 cut(s) 2214
CseI GACGC 3 cut(s) 863, 1142, 3665
Csp6I GTAC 5 cut(s) 1548, 1874, 2093, 3728, 4233
CspCI CAANNNNNGTGG 2 cut(s) 3693, 3728
CviQI GTAC 5 cut(s) 1548, 1874, 2093, 3728, 4233
DraIII CACNNNGTG 1 cut(s) 4257
EaeI YGGCCR 1 cut(s) 3607
EciI GGCGGA 1 cut(s) 1104
Ecl136II GAGCTC 2 cut(s) 256, 3420
Eco130I CCWWGG 5 cut(s) 1590, 2161, 2431, 2538, 4161
Eco147I AGGCCT 2 cut(s) 2558, 2972
Eco24I GRGCYC 2 cut(s) 258, 3422
Eco31I GGTCTC 3 cut(s) 1325, 1808, 2287
Eco47I GGWCC 3 cut(s) 1146, 2492, 3863
Eco47III AGCGCT 3 cut(s) 123, 628, 3446
Eco53kI GAGCTC 2 cut(s) 256, 3420
Eco88I CYCGRG 1 cut(s) 4272
EcoICRI GAGCTC 2 cut(s) 256, 3420
EcoO109I RGGNCCY 1 cut(s) 3694
EcoRI GAATTC 2 cut(s) 704, 2019
EcoRII CCWGG 6 cut(s) 709, 2553, 2967, 2995, 3139, 3696
EcoT14I CCWWGG 5 cut(s) 1590, 2161, 2431, 2538, 4161
EcoT22I ATGCAT 1 cut(s) 1966
EcoT38I GRGCYC 2 cut(s) 258, 3422
ErhI CCWWGG 5 cut(s) 1590, 2161, 2431, 2538, 4161
FalI AAGNNNNNCTT 6 cut(s) 2649, 2681, 2807, 2839, 3874, 3906
FaqI GGGAC 1 cut(s) 711
FbaI TGATCA 1 cut(s) 952
FblI GTMKAC 2 cut(s) 2195, 4029
FokI GGATG 8 cut(s) 518, 569, 935, 1380, 1751, 2501, 2979, 3176
FriOI GRGCYC 2 cut(s) 258, 3422
GlaI GCGC 5 cut(s) 123, 628, 1388, 3446, 3889
GsaI CCCAGC 1 cut(s) 4288
GsuI CTGGAG 3 cut(s) 732, 1329, 1701
HaeII RGCGCY 3 cut(s) 125, 630, 3448
HapII CCGG 3 cut(s) 1118, 3620, 4033
HgaI GACGC 3 cut(s) 863, 1142, 3665
HhaI GCGC 5 cut(s) 124, 629, 1389, 3447, 3890
Hin6I GCGC 5 cut(s) 122, 627, 1387, 3445, 3888
HinP1I GCGC 5 cut(s) 122, 627, 1387, 3445, 3888
HincII GTYRAC 1 cut(s) 4090
HindII GTYRAC 1 cut(s) 4090
HindIII AAGCTT 4 cut(s) 375, 872, 1227, 4199
HpaII CCGG 3 cut(s) 1118, 3620, 4033
Hpy166II GTNNAC 8 cut(s) 494, 661, 917, 2196, 2905, 4030, 4090, 4123
Hpy8I GTNNAC 8 cut(s) 494, 661, 917, 2196, 2905, 4030, 4090, 4123
HpyCH4III ACNGT 9 cut(s) 611, 1109, 2725, 2775, 2839, 2854, 3536, 4120, 4255
HpyCH4IV ACGT 2 cut(s) 5, 1846
HpyF10VI GCNNNNNNNGC 8 cut(s) 110, 119, 262, 782, 975, 1118, 1911, 2269
HpySE526I ACGT 2 cut(s) 5, 1846
HspAI GCGC 5 cut(s) 122, 627, 1387, 3445, 3888
KroI GCCGGC 1 cut(s) 1117
KroNI GCCGGC 1 cut(s) 1119
Ksp22I TGATCA 1 cut(s) 952
LguI GCTCTTC 1 cut(s) 3999
LmnI GCTCC 8 cut(s) 67, 169, 358, 549, 1117, 1353, 1478, 3211
LweI GCATC 8 cut(s) 433, 1335, 1717, 1951, 1973, 2564, 4121, 4306
MaeII ACGT 2 cut(s) 5, 1846
MaeIII GTNAC 9 cut(s) 1052, 1103, 1653, 2242, 2548, 3158, 3682, 3756, 3776
MfeI CAATTG 2 cut(s) 948, 3008
MflI RGATCY 4 cut(s) 1304, 1676, 2319, 3503
MhlI GDGCHC 7 cut(s) 258, 283, 1114, 1907, 2907, 3422, 4273
MlsI TGGCCA 1 cut(s) 3609
MluNI TGGCCA 1 cut(s) 3609
MlyI GAGTC 4 cut(s) 143, 440, 723, 992
MmeI TCCRAC 3 cut(s) 270, 1419, 3590
Mox20I TGGCCA 1 cut(s) 3609
Mph1103I ATGCAT 1 cut(s) 1966
MroNI GCCGGC 1 cut(s) 1117
MroXI GAANNNNTTC 1 cut(s) 2661
MscI TGGCCA 1 cut(s) 3609
MslI CAYNNNNRTG 7 cut(s) 192, 1281, 2807, 3045, 3957, 4045, 4253
Msp20I TGGCCA 1 cut(s) 3609
MspA1I CMGCKG 5 cut(s) 209, 776, 1970, 4109, 4186
MspI CCGG 3 cut(s) 1118, 3620, 4033
MspR9I CCNGG 6 cut(s) 711, 2555, 2969, 2997, 3141, 3698
MunI CAATTG 2 cut(s) 948, 3008
Mva1269I GAATGC 1 cut(s) 1586
MvaI CCWGG 6 cut(s) 711, 2555, 2969, 2997, 3141, 3698
MwoI GCNNNNNNNGC 8 cut(s) 110, 119, 262, 782, 975, 1118, 1911, 2269
NaeI GCCGGC 1 cut(s) 1119
NgoMIV GCCGGC 1 cut(s) 1117
NheI GCTAGC 2 cut(s) 668, 1910
NlaIV GGNNCC 5 cut(s) 42, 354, 1122, 1147, 2990
NmuCI GTSAC 2 cut(s) 2242, 3776
NsiI ATGCAT 1 cut(s) 1966
NspI RCATGY 2 cut(s) 2444, 4211
OliI CACNNNNGTG 1 cut(s) 4253
PaeR7I CTCGAG 1 cut(s) 4272
PagI TCATGA 1 cut(s) 2742
PceI AGGCCT 2 cut(s) 2558, 2972
PciI ACATGT 1 cut(s) 4207
PciSI GCTCTTC 1 cut(s) 3999
PcsI WCGNNNNNNNCGW 1 cut(s) 1852
PctI GAATGC 1 cut(s) 1586
PdiI GCCGGC 1 cut(s) 1119
PdmI GAANNNNTTC 1 cut(s) 2661
PleI GAGTC 4 cut(s) 142, 439, 722, 992
PpsI GAGTC 4 cut(s) 142, 439, 722, 992
PscI ACATGT 1 cut(s) 4207
PshBI ATTAAT 2 cut(s) 3902, 3914
PsiI TTATAA 4 cut(s) 333, 2931, 3207, 3672
Psp124BI GAGCTC 2 cut(s) 258, 3422
Psp6I CCWGG 6 cut(s) 709, 2553, 2967, 2995, 3139, 3696
PspFI CCCAGC 1 cut(s) 4284
PspGI CCWGG 6 cut(s) 709, 2553, 2967, 2995, 3139, 3696
PspN4I GGNNCC 5 cut(s) 42, 354, 1122, 1147, 2990
PsrI GAACNNNNNNTAC 2 cut(s) 3820, 3852
PstI CTGCAG 5 cut(s) 109, 528, 691, 1304, 4087
PstNI CAGNNNCTG 1 cut(s) 779
PsuI RGATCY 4 cut(s) 1304, 1676, 2319, 3503
PvuII CAGCTG 4 cut(s) 209, 776, 1970, 4109
RsaI GTAC 5 cut(s) 1549, 1875, 2094, 3729, 4234
RsaNI GTAC 5 cut(s) 1548, 1874, 2093, 3728, 4233
RseI CAYNNNNRTG 7 cut(s) 192, 1281, 2807, 3045, 3957, 4045, 4253
SacI GAGCTC 2 cut(s) 258, 3422
SapI GCTCTTC 1 cut(s) 3999
SchI GAGTC 4 cut(s) 143, 440, 723, 992
ScrFI CCNGG 6 cut(s) 711, 2555, 2969, 2997, 3141, 3698
SduI GDGCHC 7 cut(s) 258, 283, 1114, 1907, 2907, 3422, 4273
SfaNI GCATC 8 cut(s) 433, 1335, 1717, 1951, 1973, 2564, 4121, 4306
SfcI CTRYAG 5 cut(s) 105, 524, 687, 1300, 4083
Sfr274I CTCGAG 1 cut(s) 4272
SinI GGWCC 3 cut(s) 1146, 2492, 3863
SlaI CTCGAG 1 cut(s) 4272
SmiMI CAYNNNNRTG 7 cut(s) 192, 1281, 2807, 3045, 3957, 4045, 4253
SmlI CTYRAG 2 cut(s) 266, 4272
SmoI CTYRAG 2 cut(s) 266, 4272
SseBI AGGCCT 2 cut(s) 2558, 2972
SsiI CCGC 5 cut(s) 677, 1115, 2272, 2412, 4186
SspI AATATT 2 cut(s) 1570, 2630
SstI GAGCTC 2 cut(s) 258, 3422
StuI AGGCCT 2 cut(s) 2558, 2972
StyD4I CCNGG 6 cut(s) 709, 2553, 2967, 2995, 3139, 3696
StyI CCWWGG 5 cut(s) 1590, 2161, 2431, 2538, 4161
TaaI ACNGT 9 cut(s) 611, 1109, 2725, 2775, 2839, 2854, 3536, 4120, 4255
TaiI ACGT 2 cut(s) 8, 1849
TaqI TCGA 6 cut(s) 258, 1198, 2214, 3349, 3843, 4273
TaqII GACCGA 1 cut(s) 1616
TatI WGTACW 2 cut(s) 1547, 1873
TauI GCSGC 1 cut(s) 2275
TscAI CASTG 8 cut(s) 401, 653, 1138, 1619, 3100, 3838, 4081, 4258
TseFI GTSAC 2 cut(s) 2242, 3776
Tsp45I GTSAC 2 cut(s) 2242, 3776
TspGWI ACGGA 4 cut(s) 907, 1340, 2922, 3876
TspRI CASTG 8 cut(s) 401, 653, 1138, 1619, 3100, 3838, 4081, 4258
VneI GTGCAC 1 cut(s) 2903
VpaK11BI GGWCC 3 cut(s) 1146, 2492, 3863
VspI ATTAAT 2 cut(s) 3902, 3914
XceI RCATGY 2 cut(s) 2444, 4211
XhoI CTCGAG 1 cut(s) 4272
XmiI GTMKAC 2 cut(s) 2195, 4029
XmnI GAANNNNTTC 1 cut(s) 2661
Zsp2I ATGCAT 1 cut(s) 1966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.