RchiOBHm_Chr3g0449841

54S ribosomal protein L37, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0014137
Physical Location & Seq
Reverse (-)
1509566 .. 1510907
1342 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 387 bp
ATGGCTATGAGTCACGCGAGATCGTTGAGGAGCGTTATCAATTCCATGGAATTGGAAGCAGTAGGGCGACGAGCATTTTCTGCGAAGGCAAAGAAGGGTGGCAAAGGTGGTGCTGGTGATGCACCGAAGGCGTCAATTTTAGACAAGGAAGTTAAGTCTACGACTGTGGTTGGAGCTAATATACTCAAGGATGGGACGGATCCTAAAATCTTACCAGATTCCGAGTACCCTGAATGGCTTTGGCATCTGATTGATAAGCGTCCTGCATTGAGTGAACTGAGAAGGAAGAACATTGAAACTCTCCCCTACGAAGATCTCAAGCGATTTGTTAAGCTGGATAACCGGGCAAGGATCAAGGAGAACAACTCGCTAAAGGCCAAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L37

Protein Analysis

128

Amino Acids

14.27

Weight (kDa)

9.9

Isoelectric Point (pI)

62.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37 PF08561 48 - 125 1.3e-23 Mitochondrial ribosomal protein L37
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01740 AT5G14290
fragaria_vesca FvH4_6g02050
prunus_persica Prupe.6G125800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0449841
rosa_laevigata RLG00000025788 RLG00000025790
rosa_multiflora Rmu_sc0000610.1_g000005 Rmu_sc0013983.1_g000001 Rmu_sc0037111.1_g000001
rosa_roxburghii Rroxscaffold_6G00427670
rosa_rugosa Rorug02G0623700
rosa_samantha Rh3AG021900 Rh3BG022600 Rh3CG021400 Rh3DG022300
rosa_wichuraiana Rw3G001800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 158
AccII CGCG 1 cut(s) 17
AclWI GGATC 3 cut(s) 194, 207, 359
AcyI GRCGYC 1 cut(s) 131
AfaI GTAC 1 cut(s) 227
AgsI TTSAA 1 cut(s) 296
AluBI AGCT 2 cut(s) 176, 334
AluI AGCT 2 cut(s) 176, 334
AlwI GGATC 3 cut(s) 194, 207, 359
AoxI GGCC 1 cut(s) 375
AsuC2I CCSGG 1 cut(s) 344
AsuHPI GGTGA 1 cut(s) 128
BamHI GGATCC 1 cut(s) 199
BccI CCATC 1 cut(s) 185
BcnI CCSGG 1 cut(s) 344
BfaI CTAG 1 cut(s) 385
BglII AGATCT 1 cut(s) 313
Bme1390I CCNGG 1 cut(s) 344
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 344
BmsI GCATC 2 cut(s) 109, 253
BplI GAGNNNNNCTC 2 cut(s) 350, 382
BpuEI CTTGAG 2 cut(s) 170, 302
BpuMI CCSGG 1 cut(s) 344
BsaHI GRCGYC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 269
BseRI GAGGAG 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 1 cut(s) 377
BsiSI CCGG 1 cut(s) 343
BslFI GGGAC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 208
BsnI GGCC 1 cut(s) 377
Bsp143I GATC 4 cut(s) 20, 199, 313, 351
Bsp19I CCATGG 1 cut(s) 45
BspANI GGCC 1 cut(s) 377
BspCNI CTCAG 1 cut(s) 270
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 201
BspPI GGATC 3 cut(s) 194, 207, 359
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 4 cut(s) 20, 199, 313, 351
BssNI GRCGYC 1 cut(s) 131
BssT1I CCWWGG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 166
BstACI GRCGYC 1 cut(s) 131
BstAPI GCANNNNNTGC 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 278
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 196
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 4 cut(s) 23, 202, 316, 354
BstMBI GATC 4 cut(s) 20, 199, 313, 351
BstMWI GCNNNNNNNGC 3 cut(s) 80, 119, 128
BstSCI CCNGG 1 cut(s) 342
BstUI CGCG 1 cut(s) 17
BstX2I RGATCY 2 cut(s) 199, 313
BstXI CCANNNNNNTGG 1 cut(s) 52
BstYI RGATCY 2 cut(s) 199, 313
BsuRI GGCC 1 cut(s) 377
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 1 cut(s) 196
CseI GACGC 2 cut(s) 120, 248
Csp6I GTAC 1 cut(s) 226
CviAII CATG 1 cut(s) 46
CviJI RGCY 5 cut(s) 5, 176, 238, 334, 377
CviKI_1 RGCY 5 cut(s) 5, 176, 238, 334, 377
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 278
DpnI GATC 4 cut(s) 22, 201, 315, 353
DpnII GATC 4 cut(s) 20, 199, 313, 351
Eco130I CCWWGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 49
FaiI YATR 3 cut(s) 8, 47, 182
FaqI GGGAC 1 cut(s) 208
FatI CATG 1 cut(s) 45
FblI GTMKAC 1 cut(s) 158
FokI GGATG 1 cut(s) 203
FspBI CTAG 1 cut(s) 385
HaeIII GGCC 1 cut(s) 377
HapII CCGG 1 cut(s) 343
HgaI GACGC 2 cut(s) 120, 248
Hin1I GRCGYC 1 cut(s) 131
Hin1II CATG 1 cut(s) 49
HinfI GANTC 2 cut(s) 10, 218
HpaII CCGG 1 cut(s) 343
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 2 cut(s) 159, 275
Hpy188I TCNGA 2 cut(s) 223, 249
Hpy8I GTNNAC 2 cut(s) 159, 275
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 4 cut(s) 79, 88, 121, 276
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 122, 266
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 119, 128
HpyF3I CTNAG 1 cut(s) 278
Hsp92I GRCGYC 1 cut(s) 131
Hsp92II CATG 1 cut(s) 49
Kzo9I GATC 4 cut(s) 20, 199, 313, 351
LmnI GCTCC 2 cut(s) 30, 173
LpnPI CCDG 6 cut(s) 99, 228, 243, 276, 320, 356
LweI GCATC 2 cut(s) 109, 253
MaeI CTAG 1 cut(s) 385
MaeIII GTNAC 1 cut(s) 11
MalI GATC 4 cut(s) 22, 201, 315, 353
MboI GATC 4 cut(s) 20, 199, 313, 351
MboII GAAGA 2 cut(s) 298, 323
MflI RGATCY 2 cut(s) 199, 313
MluCI AATT 3 cut(s) 40, 50, 135
MlyI GAGTC 1 cut(s) 19
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 1 cut(s) 21
MseI TTAA 2 cut(s) 153, 330
MspI CCGG 1 cut(s) 343
MspR9I CCNGG 1 cut(s) 344
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 3 cut(s) 80, 119, 128
NciI CCSGG 1 cut(s) 344
NcoI CCATGG 1 cut(s) 45
NdeII GATC 4 cut(s) 20, 199, 313, 351
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 11
PfeI GAWTC 1 cut(s) 218
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 201
PsuI RGATCY 2 cut(s) 199, 313
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SaqAI TTAA 2 cut(s) 153, 330
Sau3AI GATC 4 cut(s) 20, 199, 313, 351
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 344
SetI ASST 3 cut(s) 109, 178, 336
SfaNI GCATC 2 cut(s) 109, 253
SmlI CTYRAG 2 cut(s) 185, 317
SmoI CTYRAG 2 cut(s) 185, 317
Sse9I AATT 3 cut(s) 40, 50, 135
SspMI CTAG 1 cut(s) 385
StyD4I CCNGG 1 cut(s) 342
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 166
TasI AATT 3 cut(s) 40, 50, 135
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 2 cut(s) 153, 330
Tru9I TTAA 2 cut(s) 153, 330
TseFI GTSAC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 11
TspGWI ACGGA 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 158
XspI CTAG 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.