RchiOBHm_Chr3g0450501

At2g34160-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016514
Physical Location & Seq
Reverse (-)
1995050 .. 1996583
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 471 bp
ATGGCGTCGGTGCAGGTAGCGAGGGTTGCAGCCGTACCACCACCGCAGGCCCAGGCTCAGGCTCAGCCCCAGGCCCAGGTCCAGACCCAGACTCAGAGCCAGACCCAGGCCATAGGAGAGCAGCAGAAGAAGAACAGAATTCAAGTTTCCAATACCAAGAAGCCGCTCTTCTTCTACGTCAATCTTGCTAAGAGGTATATAGAGCAACACAATGAGGTTGAGCTCTCTGCATTGGGAATGGCAATCACTACTGTTGTCACTATTGCTGAGATTTTGAAGAACAATGGACTGGCTATTGAAAAGAAGGTGTCTACATCTACAGTTGGCATGAGGGATGACAACAAGGGTCGTCTGGTGCAGAAGGCTAAGATTGAGATTGTGCTGGGGAAGTCTGAAAAGTTTGACTCTATAATGAGTGCTGCCGCAGCTGCTCAAGCTGCTCAGGAGCCAGCTGCTGAGGGCAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alba

Protein Analysis

156

Amino Acids

16.83

Weight (kDa)

9.73

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 45 - 106 2.2e-13 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04620
fragaria_vesca FvH4_6g02590
malus_domestica MD04G1226900.v1.1 MD12G1243900.v1.1
prunus_persica Prupe.6G345600_v2.0.a1
pyrus_communis pycom04g20020
rosa_chinensis RchiOBHm_Chr3g0450501
rosa_laevigata RLG00000025726
rosa_multiflora Rmu_sc0000078.1_g000053
rosa_roxburghii Rroxscaffold_6G00428180
rosa_rugosa Rorug02G0628100
rosa_samantha Rh3BG029300 Rh3DG029000
rosa_wichuraiana Rw3G002220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 166
AccI GTMKAC 1 cut(s) 311
AciI CCGC 3 cut(s) 44, 164, 423
AcsI RAATTY 1 cut(s) 138
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 3 cut(s) 58, 76, 106
AgsI TTSAA 3 cut(s) 143, 277, 299
AjnI CCWGG 4 cut(s) 51, 69, 75, 105
AluBI AGCT 4 cut(s) 223, 428, 437, 452
AluI AGCT 4 cut(s) 223, 428, 437, 452
Alw21I GWGCWC 1 cut(s) 225
AlwNI CAGNNNCTG 1 cut(s) 455
AoxI GGCC 3 cut(s) 48, 72, 108
ApeKI GCWGC 7 cut(s) 29, 121, 419, 425, 428, 437, 452
ApoI RAATTY 1 cut(s) 138
AspS9I GGNCC 3 cut(s) 49, 73, 79
AvaII GGWCC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 225
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 7 cut(s) 41, 133, 406, 415, 424, 437, 439
BceAI ACGGC 1 cut(s) 17
BciT130I CCWGG 4 cut(s) 53, 71, 77, 107
BfmI CTRYAG 1 cut(s) 318
BfuAI ACCTGC 1 cut(s) 4
BisI GCNGC 9 cut(s) 30, 122, 164, 420, 423, 426, 429, 438, 453
BlpI GCTNAGC 1 cut(s) 63
BlsI GCNGC 9 cut(s) 31, 123, 165, 421, 424, 427, 430, 439, 454
Bme1390I CCNGG 4 cut(s) 53, 71, 77, 107
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 3 cut(s) 49, 73, 79
BmiI GGNNCC 1 cut(s) 447
BmrFI CCNGG 4 cut(s) 53, 71, 77, 107
Bpu10I CCTNAGC 3 cut(s) 57, 441, 456
Bpu1102I GCTNAGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 417
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 51, 69, 75, 105
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 76, 106
Bse1I ACTGG 1 cut(s) 294
BseBI CCWGG 4 cut(s) 53, 71, 77, 107
BseDI CCNNGG 4 cut(s) 51, 69, 75, 105
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 3 cut(s) 58, 76, 106
BseMII CTCAG 6 cut(s) 71, 77, 107, 258, 447, 455
BseNI ACTGG 1 cut(s) 294
BseXI GCAGC 7 cut(s) 41, 133, 406, 415, 424, 437, 439
BseYI CCCAGC 1 cut(s) 382
BsgI GTGCAG 2 cut(s) 32, 377
BshFI GGCC 3 cut(s) 50, 74, 110
BsiHKAI GWGCWC 1 cut(s) 225
BslI CCNNNNNNNGG 3 cut(s) 58, 76, 106
BsnI GGCC 3 cut(s) 50, 74, 110
Bsp1286I GDGCHC 1 cut(s) 225
Bsp1720I GCTNAGC 1 cut(s) 63
BspACI CCGC 3 cut(s) 44, 164, 423
BspANI GGCC 3 cut(s) 50, 74, 110
BspCNI CTCAG 6 cut(s) 70, 76, 106, 259, 448, 454
BspLI GGNNCC 1 cut(s) 447
BspMI ACCTGC 1 cut(s) 4
BspQI GCTCTTC 1 cut(s) 173
BsrBI CCGCTC 1 cut(s) 166
BsrI ACTGG 1 cut(s) 294
BssECI CCNNGG 4 cut(s) 51, 69, 75, 105
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 4 cut(s) 53, 71, 77, 107
Bst4CI ACNGT 2 cut(s) 253, 322
Bst6I CTCTTC 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 48, 450
BstDEI CTNAG 8 cut(s) 57, 63, 93, 189, 267, 366, 441, 456
BstF5I GGATG 1 cut(s) 340
BstMWI GCNNNNNNNGC 5 cut(s) 26, 425, 428, 434, 437
BstNI CCWGG 4 cut(s) 53, 71, 77, 107
BstSCI CCNGG 4 cut(s) 51, 69, 75, 105
BstSFI CTRYAG 1 cut(s) 318
BstV1I GCAGC 7 cut(s) 41, 133, 406, 415, 424, 437, 439
BsuRI GGCC 3 cut(s) 50, 74, 110
BtsCI GGATG 1 cut(s) 340
BveI ACCTGC 1 cut(s) 4
Cac8I GCNNGC 2 cut(s) 48, 450
CaiI CAGNNNCTG 1 cut(s) 455
Cfr13I GGNCC 3 cut(s) 49, 73, 79
Csp6I GTAC 1 cut(s) 35
CviAII CATG 1 cut(s) 328
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 8 cut(s) 57, 63, 93, 189, 267, 366, 441, 456
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Ecl136II GAGCTC 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 223
EcoRI GAATTC 1 cut(s) 138
EcoRII CCWGG 4 cut(s) 51, 69, 75, 105
EcoT38I GRGCYC 1 cut(s) 225
FaeI CATG 1 cut(s) 331
FaiI YATR 5 cut(s) 113, 198, 200, 329, 410
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 1 cut(s) 327
FblI GTMKAC 1 cut(s) 311
Fnu4HI GCNGC 9 cut(s) 30, 122, 164, 420, 423, 426, 429, 438, 453
FokI GGATG 1 cut(s) 347
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 9 cut(s) 30, 122, 164, 420, 423, 426, 429, 438, 453
GluI GCNGC 9 cut(s) 30, 122, 164, 420, 423, 426, 429, 438, 453
GsaI CCCAGC 1 cut(s) 386
HaeIII GGCC 3 cut(s) 50, 74, 110
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 331
HinfI GANTC 2 cut(s) 91, 404
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 2 cut(s) 96, 394
Hpy188III TCNNGA 2 cut(s) 82, 443
Hpy8I GTNNAC 1 cut(s) 312
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 298, 355
HpyCH4III ACNGT 2 cut(s) 253, 322
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 4 cut(s) 13, 29, 230, 358
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 425, 428, 434, 437
HpyF3I CTNAG 8 cut(s) 57, 63, 93, 189, 267, 366, 441, 456
HpySE526I ACGT 1 cut(s) 177
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 331
LguI GCTCTTC 1 cut(s) 173
LmnI GCTCC 1 cut(s) 445
Lsp1109I GCAGC 7 cut(s) 41, 133, 406, 415, 424, 437, 439
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 256
MbiI CCGCTC 1 cut(s) 166
MboII GAAGA 5 cut(s) 139, 142, 160, 163, 289
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 1 cut(s) 138
MlyI GAGTC 2 cut(s) 85, 398
MnlI CCTC 5 cut(s) 15, 186, 208, 324, 451
MspA1I CMGCKG 2 cut(s) 428, 452
MspR9I CCNGG 4 cut(s) 53, 71, 77, 107
MvaI CCWGG 4 cut(s) 53, 71, 77, 107
MwoI GCNNNNNNNGC 5 cut(s) 26, 425, 428, 434, 437
NlaIII CATG 1 cut(s) 331
NlaIV GGNNCC 1 cut(s) 447
NmuCI GTSAC 1 cut(s) 256
PciSI GCTCTTC 1 cut(s) 173
PkrI GCNGC 9 cut(s) 31, 123, 165, 421, 424, 427, 430, 439, 454
PleI GAGTC 2 cut(s) 85, 398
PpsI GAGTC 2 cut(s) 85, 398
Psp124BI GAGCTC 1 cut(s) 225
Psp6I CCWGG 4 cut(s) 51, 69, 75, 105
PspFI CCCAGC 1 cut(s) 382
PspGI CCWGG 4 cut(s) 51, 69, 75, 105
PspN4I GGNNCC 1 cut(s) 447
PspPI GGNCC 3 cut(s) 49, 73, 79
PstNI CAGNNNCTG 1 cut(s) 455
PvuII CAGCTG 2 cut(s) 428, 452
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SacI GAGCTC 1 cut(s) 225
SapI GCTCTTC 1 cut(s) 173
SatI GCNGC 9 cut(s) 30, 122, 164, 420, 423, 426, 429, 438, 453
Sau96I GGNCC 3 cut(s) 49, 73, 79
SchI GAGTC 2 cut(s) 85, 398
ScrFI CCNGG 4 cut(s) 53, 71, 77, 107
SduI GDGCHC 1 cut(s) 225
SfcI CTRYAG 1 cut(s) 318
SinI GGWCC 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 432
SmoI CTYRAG 1 cut(s) 432
Sse9I AATT 1 cut(s) 138
SsiI CCGC 3 cut(s) 44, 164, 423
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 4 cut(s) 51, 69, 75, 105
TaaI ACNGT 2 cut(s) 253, 322
TaiI ACGT 1 cut(s) 180
TasI AATT 1 cut(s) 138
TauI GCSGC 2 cut(s) 166, 425
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 7 cut(s) 29, 121, 419, 425, 428, 437, 452
Tsp45I GTSAC 1 cut(s) 256
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 1 cut(s) 138
XmiI GTMKAC 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.